Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:43:31 (775313): wrapper (7.7.26015): starting
07:43:31 (775313): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 07:43:31] Arguments: --nthreads 8
[2025-10-12 07:43:31] Threads: 8
[2025-10-12 07:43:31] Checking for CVMFS
[2025-10-12 07:43:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:43:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:43:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:43:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:43:33] 2.13.2.0 3269412 35682 385392 151619 0 620 32787580 40960001 53850 16776704 0 457200726 99.845 184595888 36797 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 07:43:33] CVMFS is ok
[2025-10-12 07:43:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:43:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:43:33] Further information can be found at the LHC@home message board.
[2025-10-12 07:43:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:43:33] Checking for apptainer binary...
[2025-10-12 07:43:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:43:33] Running /usr/bin/apptainer --version
[2025-10-12 07:43:33] apptainer version 1.4.3-1.el9
[2025-10-12 07:43:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:43:34] c8-16-2.aglt2.org
[2025-10-12 07:43:34] apptainer works
[2025-10-12 07:43:34] Set ATHENA_PROC_NUMBER=8
[2025-10-12 07:43:34] Set ATHENA_CORE_NUMBER=8
[2025-10-12 07:43:34] Starting ATLAS job with PandaID=6837400179
[2025-10-12 07:43:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:51:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:51:12] 2025-10-12 12:50:19,504 | INFO     | monitor loop #271: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:19,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:20,220 | INFO     | PID=787696 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 08:51:12] 2025-10-12 12:50:20,221 | INFO     | .. there are 90 such processes running
[2025-10-12 08:51:12] 2025-10-12 12:50:20,258 | INFO     | job 6837400179 has state=finished
[2025-10-12 08:51:12] 2025-10-12 12:50:20,258 | INFO     | preparing for final server update for job 6837400179 in state='finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:20,258 | INFO     | this job has now completed (state=finished)
[2025-10-12 08:51:12] 2025-10-12 12:50:20,258 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 08:51:12] 2025-10-12 12:50:20,258 | INFO     | log transfer has been attempted: DONE
[2025-10-12 08:51:12] 2025-10-12 12:50:20,258 | INFO     | job 6837400179 has finished - writing final server update
[2025-10-12 08:51:12] 2025-10-12 12:50:20,259 | INFO     | total number of processed events: 400 (read)
[2025-10-12 08:51:12] 2025-10-12 12:50:20,259 | INFO     | executing command: lscpu
[2025-10-12 08:51:12] 2025-10-12 12:50:20,344 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 08:51:12] 2025-10-12 12:50:21,221 | INFO     | time since job start (3942s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:22,011 | INFO     | monitor loop #272: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:22,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:23,234 | INFO     | time since job start (3944s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:24,516 | INFO     | monitor loop #273: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:24,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:25,241 | INFO     | time since job start (3946s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:27,028 | INFO     | monitor loop #274: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:27,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:27,248 | INFO     | time since job start (3948s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:29,264 | INFO     | time since job start (3950s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:29,544 | INFO     | monitor loop #275: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:29,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:31,272 | INFO     | time since job start (3952s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:32,049 | INFO     | monitor loop #276: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:32,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:33,280 | INFO     | time since job start (3954s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:34,558 | INFO     | monitor loop #277: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:34,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:35,287 | INFO     | time since job start (3956s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:37,064 | INFO     | monitor loop #278: job 0:6837400179 is in state 'finished'
[2025-10-12 08:51:12] 2025-10-12 12:50:37,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:51:12] 2025-10-12 12:50:37,293 | INFO     | time since job start (3958s) is within the limit (172800.0s)
[2025-10-12 08:51:12] 2025-10-12 12:50:38,889 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 08:51:12] 2025-10-12 12:50:38,894 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.988726562499
[2025-10-12 08:51:12] 2025-10-12 12:50:38,913 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6837400179/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:51:12] 2025-10-12 12:50:38,914 | INFO     | extracted standard info from prmon json
[2025-10-12 08:51:12] 2025-10-12 12:50:38,914 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 08:51:12] 2025-10-12 12:50:38,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 08:51:12] 2025-10-12 12:50:38,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 08:51:12] 2025-10-12 12:50:38,915 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | sum of square deviations: 54438230.0
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | sum of deviations: -1199542887.5
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | mean x: 1760271596.5
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | mean y: 2163441.910714286
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | -- intersect: 38789634556.416916
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | intersect: 38789634556.416916
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | chi2: 0.029368938374122903
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | -- intersect: 38789634556.416916
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | current memory leak: -22.03 B/s (using 56 data points, chi2=0.03)
[2025-10-12 08:51:12] 2025-10-12 12:50:38,916 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | ..............................
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . Timing measurements:
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . get job = 0 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . initial setup = 4 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . payload setup = 42 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . stage-in = 0 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . payload execution = 3828 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . stage-out = 0 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | . log creation = 0 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,917 | INFO     | ..............................
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | 
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | job summary report
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | --------------------------------------------------
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | PanDA job id: 6837400179
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | task id: 46676269
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | errors: (none)
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | pilot state: finished 
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | transexitcode: 0
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | exeerrorcode: 0
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | exeerrordiag: 
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | exitcode: 0
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | exitmsg: OK
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | cpuconsumptiontime: 22162 s
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | nevents: 400
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | neventsw: 0
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | pid: 803210
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | pgrp: 803210
[2025-10-12 08:51:12] 2025-10-12 12:50:38,972 | INFO     | corecount: 8
[2025-10-12 08:51:12] 2025-10-12 12:50:38,973 | INFO     | event service: False
[2025-10-12 08:51:12] 2025-10-12 12:50:38,973 | INFO     | sizes: {0: 2348687, 1: 2348886, 12: 2348886, 23: 2348914, 28: 2349204, 33: 2349232, 3875: 2375202, 3877: 2384258, 3898: 2384396}
[2025-10-12 08:51:12] 2025-10-12 12:50:38,973 | INFO     | --------------------------------------------------
[2025-10-12 08:51:12] 2025-10-12 12:50:38,973 | INFO     | 
[2025-10-12 08:51:12] 2025-10-12 12:50:38,973 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,140 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | job 6837400179 has completed (purged errors)
[2025-10-12 08:51:12] 2025-10-12 12:50:39,141 | INFO     | overall cleanup function is called
[2025-10-12 08:51:12] 2025-10-12 12:50:40,150 | INFO     | --- collectZombieJob: --- 10, [803210]
[2025-10-12 08:51:12] 2025-10-12 12:50:40,150 | INFO     | zombie collector waiting for pid 803210
[2025-10-12 08:51:12] 2025-10-12 12:50:40,151 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:51:12] 2025-10-12 12:50:40,151 | INFO     | collected zombie processes
[2025-10-12 08:51:12] 2025-10-12 12:50:40,151 | INFO     | will attempt to kill all subprocesses of pid=803210
[2025-10-12 08:51:12] 2025-10-12 12:50:41,483 | INFO     | process IDs to be killed: [803210] (in reverse order)
[2025-10-12 08:51:12] 2025-10-12 12:50:41,803 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:51:12] 2025-10-12 12:50:41,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:51:12] 2025-10-12 12:50:41,839 | INFO     | did not find any defunct processes belonging to 803210
[2025-10-12 08:51:12] 2025-10-12 12:50:41,874 | INFO     | did not find any defunct processes belonging to 803210
[2025-10-12 08:51:12] 2025-10-12 12:50:41,874 | INFO     | ready for new job
[2025-10-12 08:51:12] 2025-10-12 12:50:41,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:51:12] 2025-10-12 12:50:41,875 | INFO     | ***************************************
[2025-10-12 08:51:12] 2025-10-12 12:50:41,875 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:51:12] 2025-10-12 12:50:41,875 | INFO     | ***************************************
[2025-10-12 08:51:12] 2025-10-12 12:50:41,875 | INFO     | 
[2025-10-12 08:51:12] 2025-10-12 12:50:41,909 | INFO     | architecture information:
[2025-10-12 08:51:12] 2025-10-12 12:50:41,913 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:51:12] 2025-10-12 12:50:41,938 | INFO     | cat /etc/os-release:
[2025-10-12 08:51:12] NAME="CentOS Linux"
[2025-10-12 08:51:12] VERSION="7 (Core)"
[2025-10-12 08:51:12] ID="centos"
[2025-10-12 08:51:12] ID_LIKE="rhel fedora"
[2025-10-12 08:51:12] VERSION_ID="7"
[2025-10-12 08:51:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:51:12] ANSI_COLOR="0;31"
[2025-10-12 08:51:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:51:12] HOME_URL="https://www.centos.org/"
[2025-10-12 08:51:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:51:12] 
[2025-10-12 08:51:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:51:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:51:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:51:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:51:12] 
[2025-10-12 08:51:12] 2025-10-12 12:50:41,939 | INFO     | ***************************************
[2025-10-12 08:51:12] 2025-10-12 12:50:42,441 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-10-12 08:51:12] 2025-10-12 12:50:42,482 | INFO     | sufficient remaining disk space (167551959040 B)
[2025-10-12 08:51:12] 2025-10-12 12:50:42,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:51:12] 2025-10-12 12:50:42,483 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:51:12] 2025-10-12 12:50:42,483 | INFO     | update_server=False
[2025-10-12 08:51:12] 2025-10-12 12:50:42,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:51:12] 2025-10-12 12:50:42,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:51:12] 2025-10-12 12:50:43,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:51:12] 2025-10-12 12:50:43,097 | INFO     | aborting loop
[2025-10-12 08:51:12] 2025-10-12 12:50:43,206 | INFO     | all data control threads have been joined
[2025-10-12 08:51:12] 2025-10-12 12:50:43,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:51:12] 2025-10-12 12:50:43,488 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:43,505 | INFO     | all job control threads have been joined
[2025-10-12 08:51:12] 2025-10-12 12:50:43,628 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:43,778 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:43,781 | INFO     | all payload control threads have been joined
[2025-10-12 08:51:12] 2025-10-12 12:50:43,890 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:43,913 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:43,985 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:43,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:51:12] 2025-10-12 12:50:44,102 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,211 | INFO     | [data] control thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,510 | INFO     | [job] control thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,787 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,787 | INFO     | [payload] control thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,821 | INFO     | [job] validate thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:44,993 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:45,406 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:51:12] 2025-10-12 12:50:45,421 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:46,492 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:51:12] 2025-10-12 12:50:48,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673891514176)>', '<ExcThread(monitor, started 140673619564288)>']
[2025-10-12 08:51:12] 2025-10-12 12:50:53,284 | INFO     | all workflow threads have been joined
[2025-10-12 08:51:12] 2025-10-12 12:50:53,284 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:51:12] 2025-10-12 12:50:53,285 | INFO     | traces error code: 0
[2025-10-12 08:51:12] 2025-10-12 12:50:53,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:51:12] 2025-10-12 12:51:11,751 | INFO     | PID=787696 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 08:51:12] 2025-10-12 12:51:11,751 | INFO     | .. there are 90 such processes running
[2025-10-12 08:51:12] 2025-10-12 12:51:11,752 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:51:12] 2025-10-12 12:51:11,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:51:12] 2025-10-12 12:51:11,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:51:12] 2025-10-12 12:51:11,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:51:12] 2025-10-12 12:51:11,752 | INFO     | [monitor] control thread has ended
[2025-10-12 08:51:12] 2025-10-12 12:51:11,929 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:51:12] 2025-10-12 12:51:11,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:51:12] 2025-10-12 12:51:11,974 [wrapper] pilotpid: 787696
[2025-10-12 08:51:12] 2025-10-12 12:51:12,013 [wrapper] Pilot exit status: 0
[2025-10-12 08:51:12] 2025-10-12 12:51:12,106 [wrapper] pandaids: 6837400179
[2025-10-12 08:51:12] 2025-10-12 12:51:12,394 [wrapper] cleanup supervisor_pilot 1542813 787697
[2025-10-12 08:51:12] 2025-10-12 12:51:12,412 [wrapper] Test setup, not cleaning
[2025-10-12 08:51:12] 2025-10-12 12:51:12,425 [wrapper] apfmon messages muted
[2025-10-12 08:51:12] 2025-10-12 12:51:12,427 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:51:12] 2025-10-12 12:51:12,429 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:51:12]  *** Error codes and diagnostics ***
[2025-10-12 08:51:12]     "exeErrorCode": 0,
[2025-10-12 08:51:12]     "exeErrorDiag": "",
[2025-10-12 08:51:12]     "pilotErrorCode": 0,
[2025-10-12 08:51:12]     "pilotErrorDiag": "",
[2025-10-12 08:51:12]  *** Listing of results directory ***
[2025-10-12 08:51:12] total 411740
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 23:38 pilot3.tar.gz
[2025-10-12 08:51:12] -rwx------. 1 boincer umatlas     36292 Oct  9 23:50 runpilot2-wrapper.sh
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 23:50 queuedata.json
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas       100 Oct 12 07:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:51:12] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 07:43 run_atlas
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas       105 Oct 12 07:43 job.xml
[2025-10-12 08:51:12] -rw-r--r--. 2 boincer umatlas 220564531 Oct 12 07:43 EVNT.46676267._001291.pool.root.1
[2025-10-12 08:51:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:43 start_atlas.sh
[2025-10-12 08:51:12] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 07:43 shared
[2025-10-12 08:51:12] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 07:43 input.tar.gz
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas         0 Oct 12 07:43 boinc_lockfile
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 07:43 pandaJob.out
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas    975520 Oct 12 07:44 agis_schedconf.cvmfs.json
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:51:12] drwx------. 5 boincer umatlas      4096 Oct 12 07:44 pilot3
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas      7162 Oct 12 08:45 init_data.xml
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas 195432530 Oct 12 08:49 HITS.46676269._031674.pool.root.1
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas       530 Oct 12 08:49 boinc_task_state.xml
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas      1036 Oct 12 08:50 memory_monitor_summary.json
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas    308334 Oct 12 08:50 log.46676269._031674.job.log.tgz.1
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas      7782 Oct 12 08:50 heartbeat.json
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 08:51 boinc_mmap_file
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas       822 Oct 12 08:51 pilotlog.txt
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas        95 Oct 12 08:51 pilot_heartbeat.json
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas        27 Oct 12 08:51 wrapper_checkpoint.txt
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas    553747 Oct 12 08:51 log.46676269._031674.job.log.1
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas       357 Oct 12 08:51 output.list
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas       620 Oct 12 08:51 runtime_log
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas    880640 Oct 12 08:51 result.tar.gz
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas       651 Oct 12 08:51 xK3NDmpKJR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRHPMDm39Msxn.diag
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas      8712 Oct 12 08:51 runtime_log.err
[2025-10-12 08:51:12] -rw-r--r--. 1 boincer umatlas     22284 Oct 12 08:51 stderr.txt
[2025-10-12 08:51:12] HITS file was successfully produced:
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas 195432530 Oct 12 08:49 shared/HITS.pool.root.1
[2025-10-12 08:51:12]  *** Contents of shared directory: ***
[2025-10-12 08:51:12] total 407692
[2025-10-12 08:51:12] -rw-r--r--. 2 boincer umatlas 220564531 Oct 12 07:43 ATLAS.root_0
[2025-10-12 08:51:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:43 start_atlas.sh
[2025-10-12 08:51:12] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 07:43 input.tar.gz
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas 195432530 Oct 12 08:49 HITS.pool.root.1
[2025-10-12 08:51:12] -rw-------. 1 boincer umatlas    880640 Oct 12 08:51 result.tar.gz
08:51:13 (775313): run_atlas exited; CPU time 22296.314470
08:51:13 (775313): called boinc_finish(0)

</stderr_txt>
]]>

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