Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:27:36 (203792): wrapper (7.7.26015): starting
09:27:36 (203792): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 09:27:36] Arguments: --nthreads 4
[2025-10-13 09:27:36] Threads: 4
[2025-10-13 09:27:36] Checking for CVMFS
[2025-10-13 09:27:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:27:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:27:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:27:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:27:36] 2.12.7.0 3347374 7217 64544 151653 3 57 3603445 6144000 1834 130560 3 14943720 99.996 249074 352 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-10-13 09:27:36] CVMFS is ok
[2025-10-13 09:27:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:27:36] Checking for apptainer binary...
[2025-10-13 09:27:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:27:36] Running /usr/bin/apptainer --version
[2025-10-13 09:27:36] apptainer version 1.4.2
[2025-10-13 09:27:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:27:36] Ryzen8
[2025-10-13 09:27:36] apptainer works
[2025-10-13 09:27:36] Set ATHENA_PROC_NUMBER=4
[2025-10-13 09:27:36] Set ATHENA_CORE_NUMBER=4
[2025-10-13 09:27:36] Starting ATLAS job with PandaID=6839386254
[2025-10-13 09:27:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:49:03]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:49:03] 2025-10-13 08:48:06,446 | INFO     | time since job start (4825s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:07,415 | INFO     | monitor loop #368: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:07,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:08,450 | INFO     | time since job start (4827s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:08,451 | INFO     | 4828s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 10:49:03] 2025-10-13 08:48:09,916 | INFO     | monitor loop #369: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:09,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:10,456 | INFO     | time since job start (4829s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:12,419 | INFO     | monitor loop #370: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:12,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:12,460 | INFO     | time since job start (4831s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:14,465 | INFO     | time since job start (4833s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:14,923 | INFO     | monitor loop #371: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:14,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:16,470 | INFO     | time since job start (4835s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:17,425 | INFO     | monitor loop #372: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:17,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:18,475 | INFO     | time since job start (4837s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:19,928 | INFO     | monitor loop #373: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:19,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:20,480 | INFO     | time since job start (4839s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:22,430 | INFO     | monitor loop #374: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:22,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:22,483 | INFO     | time since job start (4841s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:24,489 | INFO     | time since job start (4843s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:24,932 | INFO     | monitor loop #375: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:24,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:25,548 | INFO     | PID=207510 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 10:49:03] 2025-10-13 08:48:25,548 | INFO     | .. there are 3 such processes running
[2025-10-13 10:49:03] 2025-10-13 08:48:26,548 | INFO     | time since job start (4845s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:27,433 | INFO     | monitor loop #376: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:27,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:28,553 | INFO     | time since job start (4847s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:29,936 | INFO     | monitor loop #377: job 0:6839386254 is in state 'finished'
[2025-10-13 10:49:03] 2025-10-13 08:48:29,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:49:03] 2025-10-13 08:48:30,556 | INFO     | time since job start (4849s) is within the limit (172800.0s)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,350 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 10:49:03] 2025-10-13 08:48:32,351 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4337.453583333334
[2025-10-13 10:49:03] 2025-10-13 08:48:32,353 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839386254/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,353 | INFO     | extracted standard info from prmon json
[2025-10-13 10:49:03] 2025-10-13 08:48:32,353 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 10:49:03] 2025-10-13 08:48:32,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 10:49:03] 2025-10-13 08:48:32,353 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 10:49:03] 2025-10-13 08:48:32,353 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | fitting pss+swap vs Time
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | sum of square deviations: 115715658.0
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | sum of deviations: -8862210509.5
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | mean x: 1760342949.5
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | mean y: 2477210.0694444445
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | -- intersect: 134820271595.1917
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | intersect: 134820271595.1917
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | chi2: 0.024080863164624267
[2025-10-13 10:49:03] 2025-10-13 08:48:32,354 | INFO     | -- intersect: 134820271595.1917
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | current memory leak: -76.59 B/s (using 72 data points, chi2=0.02)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | could have reported an average CPU frequency of 4334 MHz (6 samples)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | ..............................
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . Timing measurements:
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . get job = 0 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . initial setup = 0 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . payload setup = 2 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . stage-in = 0 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . payload execution = 4792 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . stage-out = 0 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | . log creation = 0 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,355 | INFO     | ..............................
[2025-10-13 10:49:03] 2025-10-13 08:48:32,396 | INFO     | 
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | job summary report
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | --------------------------------------------------
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | PanDA job id: 6839386254
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | task id: 46676269
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | errors: (none)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | pilot state: finished 
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | transexitcode: 0
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | exeerrorcode: 0
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | exeerrordiag: 
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | exitcode: 0
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | exitmsg: OK
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | cpuconsumptiontime: 18549 s
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | nevents: 400
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | neventsw: 0
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | pid: 213939
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | pgrp: 213939
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | corecount: 4
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | event service: False
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | sizes: {0: 2348743, 1: 2348857, 3: 2349147, 11: 2349175, 4799: 2375499, 4800: 2384497, 4802: 2384681, 4838: 2384875}
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | --------------------------------------------------
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | 
[2025-10-13 10:49:03] 2025-10-13 08:48:32,397 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | job 6839386254 has completed (purged errors)
[2025-10-13 10:49:03] 2025-10-13 08:48:32,409 | INFO     | overall cleanup function is called
[2025-10-13 10:49:03] 2025-10-13 08:48:33,416 | INFO     | --- collectZombieJob: --- 10, [213939]
[2025-10-13 10:49:03] 2025-10-13 08:48:33,416 | INFO     | zombie collector waiting for pid 213939
[2025-10-13 10:49:03] 2025-10-13 08:48:33,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:49:03] 2025-10-13 08:48:33,416 | INFO     | collected zombie processes
[2025-10-13 10:49:03] 2025-10-13 08:48:33,416 | INFO     | will attempt to kill all subprocesses of pid=213939
[2025-10-13 10:49:03] 2025-10-13 08:48:33,458 | INFO     | process IDs to be killed: [213939] (in reverse order)
[2025-10-13 10:49:03] 2025-10-13 08:48:33,483 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:49:03] 2025-10-13 08:48:33,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:49:03] 2025-10-13 08:48:33,485 | INFO     | did not find any defunct processes belonging to 213939
[2025-10-13 10:49:03] 2025-10-13 08:48:33,486 | INFO     | did not find any defunct processes belonging to 213939
[2025-10-13 10:49:03] 2025-10-13 08:48:33,486 | INFO     | ready for new job
[2025-10-13 10:49:03] 2025-10-13 08:48:33,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:49:03] 2025-10-13 08:48:33,487 | INFO     | ***************************************
[2025-10-13 10:49:03] 2025-10-13 08:48:33,487 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:49:03] 2025-10-13 08:48:33,487 | INFO     | ***************************************
[2025-10-13 10:49:03] 2025-10-13 08:48:33,487 | INFO     | 
[2025-10-13 10:49:03] 2025-10-13 08:48:33,488 | INFO     | architecture information:
[2025-10-13 10:49:03] 2025-10-13 08:48:33,488 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:49:03] 2025-10-13 08:48:33,497 | INFO     | cat /etc/os-release:
[2025-10-13 10:49:03] NAME="CentOS Linux"
[2025-10-13 10:49:03] VERSION="7 (Core)"
[2025-10-13 10:49:03] ID="centos"
[2025-10-13 10:49:03] ID_LIKE="rhel fedora"
[2025-10-13 10:49:03] VERSION_ID="7"
[2025-10-13 10:49:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:49:03] ANSI_COLOR="0;31"
[2025-10-13 10:49:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:49:03] HOME_URL="https://www.centos.org/"
[2025-10-13 10:49:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:49:03] 
[2025-10-13 10:49:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:49:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:49:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:49:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:49:03] 
[2025-10-13 10:49:03] 2025-10-13 08:48:33,497 | INFO     | ***************************************
[2025-10-13 10:49:03] 2025-10-13 08:48:33,999 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 10:49:03] 2025-10-13 08:48:34,008 | INFO     | sufficient remaining disk space (99134472192 B)
[2025-10-13 10:49:03] 2025-10-13 08:48:34,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | INFO     | update_server=False
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:49:03] 2025-10-13 08:48:34,009 | INFO     | aborting loop
[2025-10-13 10:49:03] 2025-10-13 08:48:34,043 | INFO     | all data control threads have been joined
[2025-10-13 10:49:03] 2025-10-13 08:48:34,129 | INFO     | all job control threads have been joined
[2025-10-13 10:49:03] 2025-10-13 08:48:34,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:49:03] 2025-10-13 08:48:34,930 | INFO     | all payload control threads have been joined
[2025-10-13 10:49:03] 2025-10-13 08:48:35,013 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,014 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,014 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,046 | INFO     | [data] control thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,133 | INFO     | [job] control thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,346 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,404 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,519 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,690 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:35,935 | INFO     | [payload] control thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:36,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:36,226 | INFO     | [job] validate thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:36,256 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:36,294 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:36,383 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:38,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:49:03] 2025-10-13 08:48:48,776 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:49:03] 2025-10-13 08:48:49,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664654493504)>', '<ExcThread(monitor, started 139663931070208)>']
[2025-10-13 10:49:03] 2025-10-13 08:48:54,391 | INFO     | all workflow threads have been joined
[2025-10-13 10:49:03] 2025-10-13 08:48:54,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:49:03] 2025-10-13 08:48:54,392 | INFO     | traces error code: 0
[2025-10-13 10:49:03] 2025-10-13 08:48:54,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:49:03] 2025-10-13 08:49:03,689 | INFO     | PID=207510 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 10:49:03] 2025-10-13 08:49:03,689 | INFO     | .. there are 3 such processes running
[2025-10-13 10:49:03] 2025-10-13 08:49:03,690 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:49:03] 2025-10-13 08:49:03,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:49:03] 2025-10-13 08:49:03,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:49:03] 2025-10-13 08:49:03,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:49:03] 2025-10-13 08:49:03,690 | INFO     | [monitor] control thread has ended
[2025-10-13 10:49:03] 2025-10-13 08:49:03,751 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:49:03] 2025-10-13 08:49:03,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:49:03] 2025-10-13 08:49:03,754 [wrapper] pilotpid: 207510
[2025-10-13 10:49:03] 2025-10-13 08:49:03,755 [wrapper] Pilot exit status: 0
[2025-10-13 10:49:03] 2025-10-13 08:49:03,760 [wrapper] pandaids: 6839386254
[2025-10-13 10:49:03] 2025-10-13 08:49:03,776 [wrapper] cleanup supervisor_pilot  273495 207511
[2025-10-13 10:49:03] 2025-10-13 08:49:03,778 [wrapper] Test setup, not cleaning
[2025-10-13 10:49:03] 2025-10-13 08:49:03,779 [wrapper] apfmon messages muted
[2025-10-13 10:49:03] 2025-10-13 08:49:03,780 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:49:03] 2025-10-13 08:49:03,782 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:49:03]  *** Error codes and diagnostics ***
[2025-10-13 10:49:03]     "exeErrorCode": 0,
[2025-10-13 10:49:03]     "exeErrorDiag": "",
[2025-10-13 10:49:03]     "pilotErrorCode": 0,
[2025-10-13 10:49:03]     "pilotErrorDiag": "",
[2025-10-13 10:49:03]  *** Listing of results directory ***
[2025-10-13 10:49:03] insgesamt 412256
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc    557409 12. Okt 06:04 pilot3.tar.gz
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc      5112 12. Okt 06:08 queuedata.json
[2025-10-13 10:49:03] -rwx------ 1 boinc boinc     36292 12. Okt 06:09 runpilot2-wrapper.sh
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc       100 13. Okt 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:49:03] -rwxr-xr-x 1 boinc boinc      7986 13. Okt 09:27 run_atlas
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc       105 13. Okt 09:27 job.xml
[2025-10-13 10:49:03] -rw-r--r-- 2 boinc boinc     15120 13. Okt 09:27 start_atlas.sh
[2025-10-13 10:49:03] drwxrwx--x 2 boinc boinc      4096 13. Okt 09:27 shared
[2025-10-13 10:49:03] -rw-r--r-- 2 boinc boinc    569683 13. Okt 09:27 input.tar.gz
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc      9582 13. Okt 09:27 init_data.xml
[2025-10-13 10:49:03] -rw-r--r-- 2 boinc boinc 221814616 13. Okt 09:27 EVNT.46676267._003244.pool.root.1
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc         0 13. Okt 09:27 boinc_lockfile
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc      2550 13. Okt 09:27 pandaJob.out
[2025-10-13 10:49:03] -rw------- 1 boinc boinc    972849 13. Okt 09:27 agis_schedconf.cvmfs.json
[2025-10-13 10:49:03] -rw------- 1 boinc boinc   1560580 13. Okt 09:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:49:03] drwx------ 5 boinc boinc      4096 13. Okt 09:27 pilot3
[2025-10-13 10:49:03] -rw------- 1 boinc boinc 194468953 13. Okt 10:47 HITS.46676269._070606.pool.root.1
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc       529 13. Okt 10:47 boinc_task_state.xml
[2025-10-13 10:49:03] -rw------- 1 boinc boinc      1024 13. Okt 10:47 memory_monitor_summary.json
[2025-10-13 10:49:03] -rw------- 1 boinc boinc    258490 13. Okt 10:47 log.46676269._070606.job.log.tgz.1
[2025-10-13 10:49:03] -rw------- 1 boinc boinc        95 13. Okt 10:48 pilot_heartbeat.json
[2025-10-13 10:49:03] -rw------- 1 boinc boinc      7767 13. Okt 10:48 heartbeat.json
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc      8192 13. Okt 10:49 boinc_mmap_file
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc        27 13. Okt 10:49 wrapper_checkpoint.txt
[2025-10-13 10:49:03] -rw------- 1 boinc boinc       821 13. Okt 10:49 pilotlog.txt
[2025-10-13 10:49:03] -rw------- 1 boinc boinc    722958 13. Okt 10:49 log.46676269._070606.job.log.1
[2025-10-13 10:49:03] -rw------- 1 boinc boinc       357 13. Okt 10:49 output.list
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc       620 13. Okt 10:49 runtime_log
[2025-10-13 10:49:03] -rw------- 1 boinc boinc   1003520 13. Okt 10:49 result.tar.gz
[2025-10-13 10:49:03] -rw------- 1 boinc boinc       641 13. Okt 10:49 WCPLDmWZ2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQYiNDmhOY2Fm.diag
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc      8663 13. Okt 10:49 runtime_log.err
[2025-10-13 10:49:03] -rw-r--r-- 1 boinc boinc     21969 13. Okt 10:49 stderr.txt
[2025-10-13 10:49:03] HITS file was successfully produced:
[2025-10-13 10:49:03] -rw------- 1 boinc boinc 194468953 13. Okt 10:47 shared/HITS.pool.root.1
[2025-10-13 10:49:03]  *** Contents of shared directory: ***
[2025-10-13 10:49:03] insgesamt 408092
[2025-10-13 10:49:03] -rw-r--r-- 2 boinc boinc     15120 13. Okt 09:27 start_atlas.sh
[2025-10-13 10:49:03] -rw-r--r-- 2 boinc boinc    569683 13. Okt 09:27 input.tar.gz
[2025-10-13 10:49:03] -rw-r--r-- 2 boinc boinc 221814616 13. Okt 09:27 ATLAS.root_0
[2025-10-13 10:49:03] -rw------- 1 boinc boinc 194468953 13. Okt 10:47 HITS.pool.root.1
[2025-10-13 10:49:03] -rw------- 1 boinc boinc   1003520 13. Okt 10:49 result.tar.gz
10:49:04 (203792): run_atlas exited; CPU time 18580.301132
10:49:04 (203792): called boinc_finish(0)

</stderr_txt>
]]>

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