Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:31:15 (3303029): wrapper (7.7.26015): starting
07:31:15 (3303029): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 07:31:15] Arguments: --nthreads 12
[2025-10-12 07:31:15] Threads: 12
[2025-10-12 07:31:15] Checking for CVMFS
[2025-10-12 07:31:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:31:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:31:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:31:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:31:15] 2.13.2.0 3683012 12730 150220 151619 1 195 37227053 40960000 4987 16776704 0 144308107 99.859 55071842 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 07:31:15] CVMFS is ok
[2025-10-12 07:31:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:31:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:31:15] Further information can be found at the LHC@home message board.
[2025-10-12 07:31:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:31:15] Checking for apptainer binary...
[2025-10-12 07:31:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:31:15] Running /usr/bin/apptainer --version
[2025-10-12 07:31:15] apptainer version 1.4.3-1.el9
[2025-10-12 07:31:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:31:16] c8-7-4.aglt2.org
[2025-10-12 07:31:16] apptainer works
[2025-10-12 07:31:16] Set ATHENA_PROC_NUMBER=12
[2025-10-12 07:31:16] Set ATHENA_CORE_NUMBER=12
[2025-10-12 07:31:16] Starting ATLAS job with PandaID=6839591183
[2025-10-12 07:31:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:58:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:58:46]  mtime=0
[2025-10-12 07:58:46]  protocol_id=None
[2025-10-12 07:58:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 07:58:46]  replicas=None
[2025-10-12 07:58:46]  scope=mc23_13p6TeV
[2025-10-12 07:58:46]  status=None
[2025-10-12 07:58:46]  status_code=0
[2025-10-12 07:58:46]  storage_token=
[2025-10-12 07:58:46]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6839591183/log.46676269._072615.job.log.tgz.1
[2025-10-12 07:58:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/77/log.46676269._072615.job.log.tgz.1
[2025-10-12 07:58:46]  workdir=None
[2025-10-12 07:58:46] ]
[2025-10-12 07:58:46] 2025-10-12 11:58:08,971 | INFO     | transferring file log.46676269._072615.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6839591183/log.46676269._072615.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 07:58:46] 2025-10-12 11:58:08,972 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6839591183/log.46676269._072615.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._072615.job
[2025-10-12 07:58:46] 2025-10-12 11:58:08,984 | INFO     | adding to output.list: log.46676269._072615.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/77/log.46676269._072615.job.log.tg
[2025-10-12 07:58:46] 2025-10-12 11:58:08,984 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 07:58:46] 2025-10-12 11:58:08,984 | INFO     | summary of transferred files:
[2025-10-12 07:58:46] 2025-10-12 11:58:08,984 | INFO     |  -- lfn=log.46676269._072615.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 07:58:46] 2025-10-12 11:58:08,985 | INFO     | stage-out finished correctly
[2025-10-12 07:58:46] 2025-10-12 11:58:09,013 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 07:58:46] 2025-10-12 11:58:09,060 | INFO     | time since job start (1606s) is within the limit (172800.0s)
[2025-10-12 07:58:46] 2025-10-12 11:58:09,453 | INFO     | monitor loop #123: job 0:6839591183 is in state 'finished'
[2025-10-12 07:58:46] 2025-10-12 11:58:09,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:58:46] 2025-10-12 11:58:11,061 | INFO     | time since job start (1608s) is within the limit (172800.0s)
[2025-10-12 07:58:46] 2025-10-12 11:58:11,802 | INFO     | job 6839591183 has state=finished
[2025-10-12 07:58:46] 2025-10-12 11:58:11,802 | INFO     | preparing for final server update for job 6839591183 in state='finished'
[2025-10-12 07:58:46] 2025-10-12 11:58:11,802 | INFO     | this job has now completed (state=finished)
[2025-10-12 07:58:46] 2025-10-12 11:58:11,803 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 07:58:46] 2025-10-12 11:58:11,803 | INFO     | log transfer has been attempted: DONE
[2025-10-12 07:58:46] 2025-10-12 11:58:11,803 | INFO     | job 6839591183 has finished - writing final server update
[2025-10-12 07:58:46] 2025-10-12 11:58:11,803 | INFO     | total number of processed events: 400 (read)
[2025-10-12 07:58:46] 2025-10-12 11:58:11,803 | INFO     | executing command: lscpu
[2025-10-12 07:58:46] 2025-10-12 11:58:11,856 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 07:58:46] 2025-10-12 11:58:11,956 | INFO     | monitor loop #124: job 0:6839591183 is in state 'finished'
[2025-10-12 07:58:46] 2025-10-12 11:58:11,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:58:46] 2025-10-12 11:58:13,067 | INFO     | time since job start (1610s) is within the limit (172800.0s)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,331 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 07:58:46] 2025-10-12 11:58:14,347 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3396.2564140624927
[2025-10-12 07:58:46] 2025-10-12 11:58:14,355 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6839591183/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | INFO     | extracted standard info from prmon json
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:58:46] 2025-10-12 11:58:14,356 | INFO     | sum of square deviations: 2120970.0
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | sum of deviations: 7515870.999999996
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | mean x: 1760269558.0
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | mean y: 2403765.3157894737
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | -- intersect: -6235288857.943856
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | intersect: -6235288857.943856
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | chi2: 0.0012819568025878067
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | -- intersect: -6235288857.943856
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | current memory leak: 3.54 B/s (using 19 data points, chi2=0.00)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | could have reported an average CPU frequency of 3489 MHz (4 samples)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | ..............................
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . Timing measurements:
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . get job = 0 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . initial setup = 2 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . payload setup = 3 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . stage-in = 0 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . payload execution = 1583 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . stage-out = 0 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | . log creation = 0 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,357 | INFO     | ..............................
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | 
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | job summary report
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | --------------------------------------------------
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | PanDA job id: 6839591183
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | task id: 46676269
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | errors: (none)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | pilot state: finished 
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | transexitcode: 0
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | exeerrorcode: 0
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | exeerrordiag: 
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | exitcode: 0
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | exitmsg: OK
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | cpuconsumptiontime: 17061 s
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | nevents: 400
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | neventsw: 0
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | pid: 3317002
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | pgrp: 3317002
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | corecount: 12
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | event service: False
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | sizes: {0: 2348743, 3: 2349119, 10: 2349147, 1591: 2373987, 1592: 2383041, 1597: 2383179}
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | --------------------------------------------------
[2025-10-12 07:58:46] 2025-10-12 11:58:14,389 | INFO     | 
[2025-10-12 07:58:46] 2025-10-12 11:58:14,390 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | job 6839591183 has completed (purged errors)
[2025-10-12 07:58:46] 2025-10-12 11:58:14,404 | INFO     | overall cleanup function is called
[2025-10-12 07:58:46] 2025-10-12 11:58:15,411 | INFO     | --- collectZombieJob: --- 10, [3317002]
[2025-10-12 07:58:46] 2025-10-12 11:58:15,411 | INFO     | zombie collector waiting for pid 3317002
[2025-10-12 07:58:46] 2025-10-12 11:58:15,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:58:46] 2025-10-12 11:58:15,411 | INFO     | collected zombie processes
[2025-10-12 07:58:46] 2025-10-12 11:58:15,411 | INFO     | will attempt to kill all subprocesses of pid=3317002
[2025-10-12 07:58:46] 2025-10-12 11:58:15,622 | INFO     | process IDs to be killed: [3317002] (in reverse order)
[2025-10-12 07:58:46] 2025-10-12 11:58:15,706 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:58:46] 2025-10-12 11:58:15,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:58:46] 2025-10-12 11:58:15,716 | INFO     | did not find any defunct processes belonging to 3317002
[2025-10-12 07:58:46] 2025-10-12 11:58:15,724 | INFO     | did not find any defunct processes belonging to 3317002
[2025-10-12 07:58:46] 2025-10-12 11:58:15,724 | INFO     | ready for new job
[2025-10-12 07:58:46] 2025-10-12 11:58:15,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:58:46] 2025-10-12 11:58:15,725 | INFO     | ***************************************
[2025-10-12 07:58:46] 2025-10-12 11:58:15,725 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:58:46] 2025-10-12 11:58:15,725 | INFO     | ***************************************
[2025-10-12 07:58:46] 2025-10-12 11:58:15,725 | INFO     | 
[2025-10-12 07:58:46] 2025-10-12 11:58:15,739 | INFO     | architecture information:
[2025-10-12 07:58:46] 2025-10-12 11:58:15,739 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:58:46] 2025-10-12 11:58:15,749 | INFO     | cat /etc/os-release:
[2025-10-12 07:58:46] NAME="CentOS Linux"
[2025-10-12 07:58:46] VERSION="7 (Core)"
[2025-10-12 07:58:46] ID="centos"
[2025-10-12 07:58:46] ID_LIKE="rhel fedora"
[2025-10-12 07:58:46] VERSION_ID="7"
[2025-10-12 07:58:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:58:46] ANSI_COLOR="0;31"
[2025-10-12 07:58:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:58:46] HOME_URL="https://www.centos.org/"
[2025-10-12 07:58:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:58:46] 
[2025-10-12 07:58:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:58:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:58:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:58:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:58:46] 
[2025-10-12 07:58:46] 2025-10-12 11:58:15,750 | INFO     | ***************************************
[2025-10-12 07:58:46] 2025-10-12 11:58:16,252 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 07:58:46] 2025-10-12 11:58:16,260 | INFO     | sufficient remaining disk space (167944126464 B)
[2025-10-12 07:58:46] 2025-10-12 11:58:16,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:58:46] 2025-10-12 11:58:16,260 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:58:46] 2025-10-12 11:58:16,260 | INFO     | update_server=False
[2025-10-12 07:58:46] 2025-10-12 11:58:16,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:58:46] 2025-10-12 11:58:16,261 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:58:46] 2025-10-12 11:58:16,261 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:58:46] 2025-10-12 11:58:16,261 | INFO     | aborting loop
[2025-10-12 07:58:46] 2025-10-12 11:58:16,589 | INFO     | all data control threads have been joined
[2025-10-12 07:58:46] 2025-10-12 11:58:17,024 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:58:46] 2025-10-12 11:58:17,116 | INFO     | all payload control threads have been joined
[2025-10-12 07:58:46] 2025-10-12 11:58:17,265 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:17,266 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:17,266 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:17,485 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:17,594 | INFO     | [data] control thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:17,752 | INFO     | all job control threads have been joined
[2025-10-12 07:58:46] 2025-10-12 11:58:17,981 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,122 | INFO     | [payload] control thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,234 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,280 | INFO     | [job] validate thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,369 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,399 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,450 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,758 | INFO     | [job] control thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:18,767 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:19,030 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:19,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:58:46] 2025-10-12 11:58:23,557 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:58:46] 2025-10-12 11:58:25,100 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:58:46] 2025-10-12 11:58:27,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218274314048)>', '<ExcThread(monitor, started 140217646307072)>']
[2025-10-12 07:58:46] 2025-10-12 11:58:32,152 | INFO     | all workflow threads have been joined
[2025-10-12 07:58:46] 2025-10-12 11:58:32,152 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:58:46] 2025-10-12 11:58:32,152 | INFO     | traces error code: 0
[2025-10-12 07:58:46] 2025-10-12 11:58:32,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | INFO     | PID=3306770 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | INFO     | .. there are 10 such processes running
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:58:46] 2025-10-12 11:58:46,408 | INFO     | [monitor] control thread has ended
[2025-10-12 07:58:46] 2025-10-12 11:58:46,482 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:58:46] 2025-10-12 11:58:46,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:58:46] 2025-10-12 11:58:46,486 [wrapper] pilotpid: 3306770
[2025-10-12 07:58:46] 2025-10-12 11:58:46,487 [wrapper] Pilot exit status: 0
[2025-10-12 07:58:46] 2025-10-12 11:58:46,493 [wrapper] pandaids: 6839591183
[2025-10-12 07:58:46] 2025-10-12 11:58:46,556 [wrapper] cleanup supervisor_pilot 3366129 3306771
[2025-10-12 07:58:46] 2025-10-12 11:58:46,558 [wrapper] Test setup, not cleaning
[2025-10-12 07:58:46] 2025-10-12 11:58:46,560 [wrapper] apfmon messages muted
[2025-10-12 07:58:46] 2025-10-12 11:58:46,561 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:58:46] 2025-10-12 11:58:46,563 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:58:46]  *** Error codes and diagnostics ***
[2025-10-12 07:58:46]     "exeErrorCode": 0,
[2025-10-12 07:58:46]     "exeErrorDiag": "",
[2025-10-12 07:58:46]     "pilotErrorCode": 0,
[2025-10-12 07:58:46]     "pilotErrorDiag": "",
[2025-10-12 07:58:46]  *** Listing of results directory ***
[2025-10-12 07:58:46] total 407652
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 02:14 pilot3.tar.gz
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 02:28 queuedata.json
[2025-10-12 07:58:46] -rwx------. 1 boincer umatlas     36292 Oct 12 02:31 runpilot2-wrapper.sh
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas       100 Oct 12 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:58:46] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 07:31 run_atlas
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas       105 Oct 12 07:31 job.xml
[2025-10-12 07:58:46] -rw-r--r--. 2 boincer umatlas 224166704 Oct 12 07:31 EVNT.46676267._004507.pool.root.1
[2025-10-12 07:58:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:31 start_atlas.sh
[2025-10-12 07:58:46] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 07:31 shared
[2025-10-12 07:58:46] -rw-r--r--. 2 boincer umatlas    569685 Oct 12 07:31 input.tar.gz
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas         0 Oct 12 07:31 boinc_lockfile
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 07:31 pandaJob.out
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas    975520 Oct 12 07:31 agis_schedconf.cvmfs.json
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:58:46] drwx------. 5 boincer umatlas      4096 Oct 12 07:31 pilot3
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 07:57 init_data.xml
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas       529 Oct 12 07:57 boinc_task_state.xml
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas 188119582 Oct 12 07:57 HITS.46676269._072615.pool.root.1
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas        95 Oct 12 07:57 pilot_heartbeat.json
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas      1029 Oct 12 07:58 memory_monitor_summary.json
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas    351980 Oct 12 07:58 log.46676269._072615.job.log.tgz.1
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas      7768 Oct 12 07:58 heartbeat.json
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas        27 Oct 12 07:58 wrapper_checkpoint.txt
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 07:58 boinc_mmap_file
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas       823 Oct 12 07:58 pilotlog.txt
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas    270931 Oct 12 07:58 log.46676269._072615.job.log.1
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas       357 Oct 12 07:58 output.list
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas       620 Oct 12 07:58 runtime_log
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas    645120 Oct 12 07:58 result.tar.gz
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 07:58 runtime_log.err
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas       646 Oct 12 07:58 haNMDmwm4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcriNDmTy0GNo.diag
[2025-10-12 07:58:46] -rw-r--r--. 1 boincer umatlas     21691 Oct 12 07:58 stderr.txt
[2025-10-12 07:58:46] HITS file was successfully produced:
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas 188119582 Oct 12 07:57 shared/HITS.pool.root.1
[2025-10-12 07:58:46]  *** Contents of shared directory: ***
[2025-10-12 07:58:46] total 403840
[2025-10-12 07:58:46] -rw-r--r--. 2 boincer umatlas 224166704 Oct 12 07:31 ATLAS.root_0
[2025-10-12 07:58:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:31 start_atlas.sh
[2025-10-12 07:58:46] -rw-r--r--. 2 boincer umatlas    569685 Oct 12 07:31 input.tar.gz
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas 188119582 Oct 12 07:57 HITS.pool.root.1
[2025-10-12 07:58:46] -rw-------. 1 boincer umatlas    645120 Oct 12 07:58 result.tar.gz
07:58:48 (3303029): run_atlas exited; CPU time 17088.974648
07:58:48 (3303029): called boinc_finish(0)

</stderr_txt>
]]>

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