Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:07:20 (2996308): wrapper (7.7.26015): starting
04:07:20 (2996308): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 04:07:20] Arguments: --nthreads 3
[2025-10-13 04:07:20] Threads: 3
[2025-10-13 04:07:20] Checking for CVMFS
[2025-10-13 04:07:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:07:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:07:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:07:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:07:20] 2.9.2.0 1460546 5177 84804 151644 3 9 4285278 36864001 0 130560 0 4063547 99.991 176158 778 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 04:07:20] CVMFS is ok
[2025-10-13 04:07:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:07:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:07:20] Further information can be found at the LHC@home message board.
[2025-10-13 04:07:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:07:20] Checking for apptainer binary...
[2025-10-13 04:07:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:07:20] Running /usr/bin/apptainer --version
[2025-10-13 04:07:20] apptainer version 1.4.1-1.1
[2025-10-13 04:07:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:07:20] thA371a
[2025-10-13 04:07:20] apptainer works
[2025-10-13 04:07:20] Set ATHENA_PROC_NUMBER=3
[2025-10-13 04:07:20] Set ATHENA_CORE_NUMBER=3
[2025-10-13 04:07:20] Starting ATLAS job with PandaID=6839386156
[2025-10-13 04:07:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:32:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:32:44] 2025-10-13 03:32:12,199 | INFO     | job 6839386156 has completed (purged errors)
[2025-10-13 05:32:44] 2025-10-13 03:32:12,199 | INFO     | overall cleanup function is called
[2025-10-13 05:32:44] 2025-10-13 03:32:13,206 | INFO     | --- collectZombieJob: --- 10, [3006457]
[2025-10-13 05:32:44] 2025-10-13 03:32:13,206 | INFO     | zombie collector waiting for pid 3006457
[2025-10-13 05:32:44] 2025-10-13 03:32:13,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:32:44] 2025-10-13 03:32:13,207 | INFO     | collected zombie processes
[2025-10-13 05:32:44] 2025-10-13 03:32:13,207 | INFO     | will attempt to kill all subprocesses of pid=3006457
[2025-10-13 05:32:44] 2025-10-13 03:32:13,251 | INFO     | process IDs to be killed: [3006457] (in reverse order)
[2025-10-13 05:32:44] 2025-10-13 03:32:13,274 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:32:44] 2025-10-13 03:32:13,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:32:44] 2025-10-13 03:32:13,276 | INFO     | did not find any defunct processes belonging to 3006457
[2025-10-13 05:32:44] 2025-10-13 03:32:13,277 | INFO     | did not find any defunct processes belonging to 3006457
[2025-10-13 05:32:44] 2025-10-13 03:32:13,277 | INFO     | ready for new job
[2025-10-13 05:32:44] 2025-10-13 03:32:13,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:32:44] 2025-10-13 03:32:13,278 | INFO     | ***************************************
[2025-10-13 05:32:44] 2025-10-13 03:32:13,278 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:32:44] 2025-10-13 03:32:13,278 | INFO     | ***************************************
[2025-10-13 05:32:44] 2025-10-13 03:32:13,278 | INFO     | 
[2025-10-13 05:32:44] 2025-10-13 03:32:13,278 | INFO     | architecture information:
[2025-10-13 05:32:44] 2025-10-13 03:32:13,278 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:32:44] 2025-10-13 03:32:13,286 | INFO     | cat /etc/os-release:
[2025-10-13 05:32:44] NAME="CentOS Linux"
[2025-10-13 05:32:44] VERSION="7 (Core)"
[2025-10-13 05:32:44] ID="centos"
[2025-10-13 05:32:44] ID_LIKE="rhel fedora"
[2025-10-13 05:32:44] VERSION_ID="7"
[2025-10-13 05:32:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:32:44] ANSI_COLOR="0;31"
[2025-10-13 05:32:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:32:44] HOME_URL="https://www.centos.org/"
[2025-10-13 05:32:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:32:44] 
[2025-10-13 05:32:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:32:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:32:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:32:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:32:44] 
[2025-10-13 05:32:44] 2025-10-13 03:32:13,287 | INFO     | ***************************************
[2025-10-13 05:32:44] 2025-10-13 03:32:13,790 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | INFO     | sufficient remaining disk space (255293652992 B)
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | INFO     | update_server=False
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:32:44] 2025-10-13 03:32:13,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:32:44] 2025-10-13 03:32:13,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:32:44] 2025-10-13 03:32:14,374 | INFO     | all data control threads have been joined
[2025-10-13 05:32:44] 2025-10-13 03:32:14,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:32:44] 2025-10-13 03:32:14,465 | INFO     | aborting loop
[2025-10-13 05:32:44] 2025-10-13 03:32:14,630 | INFO     | all payload control threads have been joined
[2025-10-13 05:32:44] 2025-10-13 03:32:14,809 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:14,809 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:14,822 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:14,865 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:14,980 | INFO     | all job control threads have been joined
[2025-10-13 05:32:44] 2025-10-13 03:32:15,380 | INFO     | [data] control thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,470 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,524 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,558 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,636 | INFO     | [payload] control thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,752 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,842 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:15,986 | INFO     | [job] control thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:16,156 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:16,261 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:16,272 | INFO     | [job] validate thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:17,810 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:32:44] 2025-10-13 03:32:31,314 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:32:44] 2025-10-13 03:32:32,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139703593305920)>', '<ExcThread(monitor, started 139702661277440)>']
[2025-10-13 05:32:44] 2025-10-13 03:32:37,764 | INFO     | all workflow threads have been joined
[2025-10-13 05:32:44] 2025-10-13 03:32:37,765 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:32:44] 2025-10-13 03:32:37,765 | INFO     | traces error code: 0
[2025-10-13 05:32:44] 2025-10-13 03:32:37,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:32:44] 2025-10-13 03:32:44,762 | INFO     | PID=3000025 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:32:44] 2025-10-13 03:32:44,762 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:32:44] 2025-10-13 03:32:44,762 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:32:44] 2025-10-13 03:32:44,762 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:32:44] 2025-10-13 03:32:44,762 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:32:44] 2025-10-13 03:32:44,762 | INFO     | [monitor] control thread has ended
[2025-10-13 05:32:44] 2025-10-13 03:32:44,808 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:32:44] 2025-10-13 03:32:44,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:32:44] 2025-10-13 03:32:44,813 [wrapper] pilotpid: 3000025
[2025-10-13 05:32:44] 2025-10-13 03:32:44,815 [wrapper] Pilot exit status: 0
[2025-10-13 05:32:44] 2025-10-13 03:32:44,822 [wrapper] pandaids: 6839386156
[2025-10-13 05:32:44] 2025-10-13 03:32:44,838 [wrapper] cleanup supervisor_pilot 3018317 3000026
[2025-10-13 05:32:44] 2025-10-13 03:32:44,841 [wrapper] Test setup, not cleaning
[2025-10-13 05:32:44] 2025-10-13 03:32:44,843 [wrapper] apfmon messages muted
[2025-10-13 05:32:44] 2025-10-13 03:32:44,845 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:32:44] 2025-10-13 03:32:44,848 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:32:44]  *** Error codes and diagnostics ***
[2025-10-13 05:32:44]     "exeErrorCode": 0,
[2025-10-13 05:32:44]     "exeErrorDiag": "",
[2025-10-13 05:32:44]     "pilotErrorCode": 0,
[2025-10-13 05:32:44]     "pilotErrorDiag": "",
[2025-10-13 05:32:44]  *** Listing of results directory ***
[2025-10-13 05:32:44] total 412480
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:04 pilot3.tar.gz
[2025-10-13 05:32:44] -rwx------ 1 boinc boinc     36292 Oct 12 06:08 runpilot2-wrapper.sh
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:08 queuedata.json
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:32:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:07 run_atlas
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:07 job.xml
[2025-10-13 05:32:44] -rw-r--r-- 2 boinc boinc 223687199 Oct 13 04:07 EVNT.46676267._003235.pool.root.1
[2025-10-13 05:32:44] -rw-r--r-- 2 boinc boinc    569672 Oct 13 04:07 input.tar.gz
[2025-10-13 05:32:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:07 start_atlas.sh
[2025-10-13 05:32:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:07 shared
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:07 boinc_setup_complete
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc      6439 Oct 13 04:07 init_data.xml
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:07 boinc_lockfile
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc      2550 Oct 13 04:07 pandaJob.out
[2025-10-13 05:32:44] -rw------- 1 boinc boinc    975595 Oct 13 04:07 agis_schedconf.cvmfs.json
[2025-10-13 05:32:44] -rw------- 1 boinc boinc   1560580 Oct 13 04:07 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:32:44] drwx------ 5 boinc boinc      4096 Oct 13 04:07 pilot3
[2025-10-13 05:32:44] -rw------- 1 boinc boinc 192812257 Oct 13 05:31 HITS.46676269._070508.pool.root.1
[2025-10-13 05:32:44] -rw------- 1 boinc boinc        95 Oct 13 05:31 pilot_heartbeat.json
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:31 boinc_task_state.xml
[2025-10-13 05:32:44] -rw------- 1 boinc boinc      1021 Oct 13 05:32 memory_monitor_summary.json
[2025-10-13 05:32:44] -rw------- 1 boinc boinc    247081 Oct 13 05:32 log.46676269._070508.job.log.tgz.1
[2025-10-13 05:32:44] -rw------- 1 boinc boinc      7758 Oct 13 05:32 heartbeat.json
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:32 wrapper_checkpoint.txt
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:32 boinc_mmap_file
[2025-10-13 05:32:44] -rw------- 1 boinc boinc       747 Oct 13 05:32 pilotlog.txt
[2025-10-13 05:32:44] -rw------- 1 boinc boinc    745335 Oct 13 05:32 log.46676269._070508.job.log.1
[2025-10-13 05:32:44] -rw------- 1 boinc boinc       357 Oct 13 05:32 output.list
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:32 runtime_log
[2025-10-13 05:32:44] -rw------- 1 boinc boinc   1013760 Oct 13 05:32 result.tar.gz
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc      8782 Oct 13 05:32 runtime_log.err
[2025-10-13 05:32:44] -rw------- 1 boinc boinc       659 Oct 13 05:32 L5iMDmGZ2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmg8SMDmCyLBon.diag
[2025-10-13 05:32:44] -rw-r--r-- 1 boinc boinc     10810 Oct 13 05:32 stderr.txt
[2025-10-13 05:32:44] HITS file was successfully produced:
[2025-10-13 05:32:44] -rw------- 1 boinc boinc 192812257 Oct 13 05:31 shared/HITS.pool.root.1
[2025-10-13 05:32:44]  *** Contents of shared directory: ***
[2025-10-13 05:32:44] total 408320
[2025-10-13 05:32:44] -rw-r--r-- 2 boinc boinc 223687199 Oct 13 04:07 ATLAS.root_0
[2025-10-13 05:32:44] -rw-r--r-- 2 boinc boinc    569672 Oct 13 04:07 input.tar.gz
[2025-10-13 05:32:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:07 start_atlas.sh
[2025-10-13 05:32:44] -rw------- 1 boinc boinc 192812257 Oct 13 05:31 HITS.pool.root.1
[2025-10-13 05:32:44] -rw------- 1 boinc boinc   1013760 Oct 13 05:32 result.tar.gz
05:32:46 (2996308): run_atlas exited; CPU time 14638.987310
05:32:46 (2996308): called boinc_finish(0)

</stderr_txt>
]]>

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