Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:08:22 (3361755): wrapper (7.7.26015): starting
22:08:22 (3361755): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 22:08:22] Arguments: --nthreads 3
[2025-10-12 22:08:22] Threads: 3
[2025-10-12 22:08:22] Checking for CVMFS
[2025-10-12 22:08:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:08:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:08:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:08:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:08:22] 2.9.2.0 796922 4804 86956 151635 0 57 32756818 36864001 0 130560 0 3840158 99.991 166774 1056 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 22:08:22] CVMFS is ok
[2025-10-12 22:08:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:08:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:08:22] Further information can be found at the LHC@home message board.
[2025-10-12 22:08:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:08:22] Checking for apptainer binary...
[2025-10-12 22:08:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:08:22] Running /usr/bin/apptainer --version
[2025-10-12 22:08:22] apptainer version 1.4.1-1.1
[2025-10-12 22:08:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:08:22] atlasA303
[2025-10-12 22:08:22] apptainer works
[2025-10-12 22:08:22] Set ATHENA_PROC_NUMBER=3
[2025-10-12 22:08:22] Set ATHENA_CORE_NUMBER=3
[2025-10-12 22:08:22] Starting ATLAS job with PandaID=6839591427
[2025-10-12 22:08:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:28:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:28:40] 2025-10-12 21:27:58,344 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,344 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,344 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,344 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,344 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | job 6839591427 has completed (purged errors)
[2025-10-12 23:28:40] 2025-10-12 21:27:58,345 | INFO     | overall cleanup function is called
[2025-10-12 23:28:40] 2025-10-12 21:27:59,352 | INFO     | --- collectZombieJob: --- 10, [3371988]
[2025-10-12 23:28:40] 2025-10-12 21:27:59,352 | INFO     | zombie collector waiting for pid 3371988
[2025-10-12 23:28:40] 2025-10-12 21:27:59,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:28:40] 2025-10-12 21:27:59,352 | INFO     | collected zombie processes
[2025-10-12 23:28:40] 2025-10-12 21:27:59,352 | INFO     | will attempt to kill all subprocesses of pid=3371988
[2025-10-12 23:28:40] 2025-10-12 21:27:59,394 | INFO     | process IDs to be killed: [3371988] (in reverse order)
[2025-10-12 23:28:40] 2025-10-12 21:27:59,420 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:28:40] 2025-10-12 21:27:59,420 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:28:40] 2025-10-12 21:27:59,421 | INFO     | did not find any defunct processes belonging to 3371988
[2025-10-12 23:28:40] 2025-10-12 21:27:59,422 | INFO     | did not find any defunct processes belonging to 3371988
[2025-10-12 23:28:40] 2025-10-12 21:27:59,422 | INFO     | ready for new job
[2025-10-12 23:28:40] 2025-10-12 21:27:59,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:28:40] 2025-10-12 21:27:59,423 | INFO     | ***************************************
[2025-10-12 23:28:40] 2025-10-12 21:27:59,423 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:28:40] 2025-10-12 21:27:59,423 | INFO     | ***************************************
[2025-10-12 23:28:40] 2025-10-12 21:27:59,423 | INFO     | 
[2025-10-12 23:28:40] 2025-10-12 21:27:59,423 | INFO     | architecture information:
[2025-10-12 23:28:40] 2025-10-12 21:27:59,423 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:28:40] 2025-10-12 21:27:59,433 | INFO     | cat /etc/os-release:
[2025-10-12 23:28:40] NAME="CentOS Linux"
[2025-10-12 23:28:40] VERSION="7 (Core)"
[2025-10-12 23:28:40] ID="centos"
[2025-10-12 23:28:40] ID_LIKE="rhel fedora"
[2025-10-12 23:28:40] VERSION_ID="7"
[2025-10-12 23:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:28:40] ANSI_COLOR="0;31"
[2025-10-12 23:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:28:40] HOME_URL="https://www.centos.org/"
[2025-10-12 23:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:28:40] 
[2025-10-12 23:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:28:40] 
[2025-10-12 23:28:40] 2025-10-12 21:27:59,433 | INFO     | ***************************************
[2025-10-12 23:28:40] 2025-10-12 21:27:59,936 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:28:40] 2025-10-12 21:27:59,950 | INFO     | sufficient remaining disk space (372056784896 B)
[2025-10-12 23:28:40] 2025-10-12 21:27:59,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:28:40] 2025-10-12 21:27:59,950 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:28:40] 2025-10-12 21:27:59,950 | INFO     | update_server=False
[2025-10-12 23:28:40] 2025-10-12 21:27:59,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:28:40] 2025-10-12 21:27:59,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:28:40] 2025-10-12 21:28:00,405 | INFO     | all data control threads have been joined
[2025-10-12 23:28:40] 2025-10-12 21:28:00,494 | INFO     | all job control threads have been joined
[2025-10-12 23:28:40] 2025-10-12 21:28:00,542 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:28:40] 2025-10-12 21:28:00,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:28:40] 2025-10-12 21:28:00,778 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:28:40] 2025-10-12 21:28:00,778 | INFO     | aborting loop
[2025-10-12 23:28:40] 2025-10-12 21:28:00,955 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:00,955 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:00,958 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,411 | INFO     | [data] control thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,422 | INFO     | all payload control threads have been joined
[2025-10-12 23:28:40] 2025-10-12 21:28:01,448 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,487 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,500 | INFO     | [job] control thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,784 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,795 | INFO     | [job] validate thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,862 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,915 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:01,984 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:02,428 | INFO     | [payload] control thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:02,548 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:04,572 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:10,997 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:28:40] 2025-10-12 21:28:12,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:28:40] 2025-10-12 21:28:30,828 | INFO     | PID=3365472 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:28:40] 2025-10-12 21:28:30,828 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:28:40] 2025-10-12 21:28:30,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:28:40] 2025-10-12 21:28:30,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:28:40] 2025-10-12 21:28:33,742 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:28:40] 2025-10-12 21:28:34,875 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140297648387904)>', '<ExcThread(monitor, started 140296633440000)>']
[2025-10-12 23:28:40] 2025-10-12 21:28:35,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:28:40] 2025-10-12 21:28:35,847 | INFO     | [monitor] control thread has ended
[2025-10-12 23:28:40] 2025-10-12 21:28:39,878 | INFO     | all workflow threads have been joined
[2025-10-12 23:28:40] 2025-10-12 21:28:39,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:28:40] 2025-10-12 21:28:39,879 | INFO     | traces error code: 0
[2025-10-12 23:28:40] 2025-10-12 21:28:39,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:28:40] 2025-10-12 21:28:39,931 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:28:40] 2025-10-12 21:28:39,934 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:28:40] 2025-10-12 21:28:39,936 [wrapper] pilotpid: 3365472
[2025-10-12 23:28:40] 2025-10-12 21:28:39,939 [wrapper] Pilot exit status: 0
[2025-10-12 23:28:40] 2025-10-12 21:28:39,947 [wrapper] pandaids: 6839591427
[2025-10-12 23:28:40] 2025-10-12 21:28:39,964 [wrapper] cleanup supervisor_pilot 3400943 3365473
[2025-10-12 23:28:40] 2025-10-12 21:28:39,966 [wrapper] Test setup, not cleaning
[2025-10-12 23:28:40] 2025-10-12 21:28:39,969 [wrapper] apfmon messages muted
[2025-10-12 23:28:40] 2025-10-12 21:28:39,971 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:28:40] 2025-10-12 21:28:39,974 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:28:40]  *** Error codes and diagnostics ***
[2025-10-12 23:28:40]     "exeErrorCode": 0,
[2025-10-12 23:28:40]     "exeErrorDiag": "",
[2025-10-12 23:28:40]     "pilotErrorCode": 0,
[2025-10-12 23:28:40]     "pilotErrorDiag": "",
[2025-10-12 23:28:40]  *** Listing of results directory ***
[2025-10-12 23:28:40] total 407060
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:33 queuedata.json
[2025-10-12 23:28:40] -rwx------ 1 boinc boinc     36292 Oct 12 08:33 runpilot2-wrapper.sh
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:28:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:08 run_atlas
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:08 job.xml
[2025-10-12 23:28:40] -rw-r--r-- 2 boinc boinc 220875051 Oct 12 22:08 EVNT.46676267._004510.pool.root.1
[2025-10-12 23:28:40] -rw-r--r-- 2 boinc boinc    569679 Oct 12 22:08 input.tar.gz
[2025-10-12 23:28:40] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:08 start_atlas.sh
[2025-10-12 23:28:40] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:08 shared
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:08 boinc_setup_complete
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc      6450 Oct 12 22:08 init_data.xml
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:08 boinc_lockfile
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:08 pandaJob.out
[2025-10-12 23:28:40] -rw------- 1 boinc boinc    975536 Oct 12 22:08 agis_schedconf.cvmfs.json
[2025-10-12 23:28:40] -rw------- 1 boinc boinc   1560580 Oct 12 22:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:28:40] drwx------ 5 boinc boinc      4096 Oct 12 22:08 pilot3
[2025-10-12 23:28:40] -rw------- 1 boinc boinc 190126804 Oct 12 23:27 HITS.46676269._072691.pool.root.1
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:27 boinc_task_state.xml
[2025-10-12 23:28:40] -rw------- 1 boinc boinc      1017 Oct 12 23:27 memory_monitor_summary.json
[2025-10-12 23:28:40] -rw------- 1 boinc boinc    265227 Oct 12 23:27 log.46676269._072691.job.log.tgz.1
[2025-10-12 23:28:40] -rw------- 1 boinc boinc        95 Oct 12 23:27 pilot_heartbeat.json
[2025-10-12 23:28:40] -rw------- 1 boinc boinc      7751 Oct 12 23:27 heartbeat.json
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:28 boinc_mmap_file
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:28 wrapper_checkpoint.txt
[2025-10-12 23:28:40] -rw------- 1 boinc boinc      4824 Oct 12 23:28 pilotlog.txt
[2025-10-12 23:28:40] -rw------- 1 boinc boinc    702836 Oct 12 23:28 log.46676269._072691.job.log.1
[2025-10-12 23:28:40] -rw------- 1 boinc boinc       357 Oct 12 23:28 output.list
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:28 runtime_log
[2025-10-12 23:28:40] -rw------- 1 boinc boinc    983040 Oct 12 23:28 result.tar.gz
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc      8792 Oct 12 23:28 runtime_log.err
[2025-10-12 23:28:40] -rw------- 1 boinc boinc       661 Oct 12 23:28 1iiNDmDp4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm8MTMDmVmUIvn.diag
[2025-10-12 23:28:40] -rw-r--r-- 1 boinc boinc     12835 Oct 12 23:28 stderr.txt
[2025-10-12 23:28:40] HITS file was successfully produced:
[2025-10-12 23:28:40] -rw------- 1 boinc boinc 190126804 Oct 12 23:27 shared/HITS.pool.root.1
[2025-10-12 23:28:40]  *** Contents of shared directory: ***
[2025-10-12 23:28:40] total 402916
[2025-10-12 23:28:40] -rw-r--r-- 2 boinc boinc 220875051 Oct 12 22:08 ATLAS.root_0
[2025-10-12 23:28:40] -rw-r--r-- 2 boinc boinc    569679 Oct 12 22:08 input.tar.gz
[2025-10-12 23:28:40] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:08 start_atlas.sh
[2025-10-12 23:28:40] -rw------- 1 boinc boinc 190126804 Oct 12 23:27 HITS.pool.root.1
[2025-10-12 23:28:40] -rw------- 1 boinc boinc    983040 Oct 12 23:28 result.tar.gz
23:28:41 (3361755): run_atlas exited; CPU time 13663.379267
23:28:41 (3361755): called boinc_finish(0)

</stderr_txt>
]]>

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