Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
07:31:38 (727807): wrapper (7.7.26015): starting
07:31:38 (727807): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 07:31:38] Arguments: --nthreads 12
[2025-10-12 07:31:38] Threads: 12
[2025-10-12 07:31:38] Checking for CVMFS
[2025-10-12 07:31:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:31:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:31:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:31:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:31:38] 2.13.2.0 14624 464 52788 151619 3 188 2502893 4096001 922 130560 0 1766079 99.997 21590 1708 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 07:31:38] CVMFS is ok
[2025-10-12 07:31:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:31:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 07:31:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 07:31:38] Further information can be found at the LHC@home message board.
[2025-10-12 07:31:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:31:38] Checking for apptainer binary...
[2025-10-12 07:31:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:31:38] Running /usr/bin/apptainer --version
[2025-10-12 07:31:38] apptainer version 1.4.3
[2025-10-12 07:31:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:31:38] zhiwei-Z790-Riptide-WiFi
[2025-10-12 07:31:38] apptainer works
[2025-10-12 07:31:38] Set ATHENA_PROC_NUMBER=12
[2025-10-12 07:31:38] Set ATHENA_CORE_NUMBER=12
[2025-10-12 07:31:38] Starting ATLAS job with PandaID=6839590831
[2025-10-12 07:31:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:55:52]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:55:52]  protocol_id=None
[2025-10-12 07:55:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 07:55:52]  replicas=None
[2025-10-12 07:55:52]  scope=mc23_13p6TeV
[2025-10-12 07:55:52]  status=None
[2025-10-12 07:55:52]  status_code=0
[2025-10-12 07:55:52]  storage_token=
[2025-10-12 07:55:52]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6839590831/log.46676269._072399.job.log.tgz.1
[2025-10-12 07:55:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/f7/log.46676269._072399.job.log.tgz.1
[2025-10-12 07:55:52]  workdir=None
[2025-10-12 07:55:52] ]
[2025-10-12 07:55:52] 2025-10-12 11:54:59,097 | INFO     | transferring file log.46676269._072399.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6839590831/log.46676269._072399.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 07:55:52] 2025-10-12 11:54:59,097 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6839590831/log.46676269._072399.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._072399.job
[2025-10-12 07:55:52] 2025-10-12 11:54:59,106 | INFO     | adding to output.list: log.46676269._072399.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/f7/log.46676269._072399.job.log.tg
[2025-10-12 07:55:52] 2025-10-12 11:54:59,107 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 07:55:52] 2025-10-12 11:54:59,107 | INFO     | summary of transferred files:
[2025-10-12 07:55:52] 2025-10-12 11:54:59,107 | INFO     |  -- lfn=log.46676269._072399.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 07:55:52] 2025-10-12 11:54:59,107 | INFO     | stage-out finished correctly
[2025-10-12 07:55:52] 2025-10-12 11:55:00,012 | INFO     | time since job start (1397s) is within the limit (172800.0s)
[2025-10-12 07:55:52] 2025-10-12 11:55:01,168 | INFO     | monitor loop #111: job 0:6839590831 is in state 'finished'
[2025-10-12 07:55:52] 2025-10-12 11:55:01,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:55:52] 2025-10-12 11:55:01,763 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 07:55:52] 2025-10-12 11:55:02,018 | INFO     | time since job start (1399s) is within the limit (172800.0s)
[2025-10-12 07:55:52] 2025-10-12 11:55:03,671 | INFO     | monitor loop #112: job 0:6839590831 is in state 'finished'
[2025-10-12 07:55:52] 2025-10-12 11:55:03,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | job 6839590831 has state=finished
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | preparing for final server update for job 6839590831 in state='finished'
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | this job has now completed (state=finished)
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | log transfer has been attempted: DONE
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | job 6839590831 has finished - writing final server update
[2025-10-12 07:55:52] 2025-10-12 11:55:03,882 | INFO     | total number of processed events: 400 (read)
[2025-10-12 07:55:52] 2025-10-12 11:55:03,884 | INFO     | executing command: lscpu
[2025-10-12 07:55:52] 2025-10-12 11:55:03,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 07:55:52] 2025-10-12 11:55:04,023 | INFO     | time since job start (1401s) is within the limit (172800.0s)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,236 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 07:55:52] 2025-10-12 11:55:05,238 | INFO     | found 24 cores (24 cores per socket, 1 socket) , CPU MHz: 2980.6678125
[2025-10-12 07:55:52] 2025-10-12 11:55:05,241 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839590831/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,241 | INFO     | extracted standard info from prmon json
[2025-10-12 07:55:52] 2025-10-12 11:55:05,241 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:55:52] 2025-10-12 11:55:05,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:55:52] 2025-10-12 11:55:05,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:55:52] 2025-10-12 11:55:05,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | sum of square deviations: 1265140.0
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | sum of deviations: 136887568.5
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | mean x: 1760269482.5
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | mean y: 2902497.9375
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | -- intersect: -190457449213.4765
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | intersect: -190457449213.4765
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | chi2: 0.005198426789558965
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | -- intersect: -190457449213.4765
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | current memory leak: 108.20 B/s (using 16 data points, chi2=0.01)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | could have reported an average CPU frequency of 3505 MHz (4 samples)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,242 | INFO     | ..............................
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . Timing measurements:
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . get job = 0 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . initial setup = 2 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . payload setup = 1 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . stage-in = 0 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . payload execution = 1377 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . stage-out = 0 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | . log creation = 0 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,243 | INFO     | ..............................
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | 
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | job summary report
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | --------------------------------------------------
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | PanDA job id: 6839590831
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | task id: 46676269
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | errors: (none)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | pilot state: finished 
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | transexitcode: 0
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | exeerrorcode: 0
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | exeerrordiag: 
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | exitcode: 0
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | exitmsg: OK
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | cpuconsumptiontime: 14622 s
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | nevents: 400
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | neventsw: 0
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | pid: 738298
[2025-10-12 07:55:52] 2025-10-12 11:55:05,274 | INFO     | pgrp: 738298
[2025-10-12 07:55:52] 2025-10-12 11:55:05,275 | INFO     | corecount: 12
[2025-10-12 07:55:52] 2025-10-12 11:55:05,275 | INFO     | event service: False
[2025-10-12 07:55:52] 2025-10-12 11:55:05,275 | INFO     | sizes: {0: 2348857, 1: 2349119, 10: 2349147, 1382: 2373833, 1383: 2382831, 1385: 2382887, 1389: 2383209}
[2025-10-12 07:55:52] 2025-10-12 11:55:05,275 | INFO     | --------------------------------------------------
[2025-10-12 07:55:52] 2025-10-12 11:55:05,275 | INFO     | 
[2025-10-12 07:55:52] 2025-10-12 11:55:05,275 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | job 6839590831 has completed (purged errors)
[2025-10-12 07:55:52] 2025-10-12 11:55:05,287 | INFO     | overall cleanup function is called
[2025-10-12 07:55:52] 2025-10-12 11:55:06,293 | INFO     | --- collectZombieJob: --- 10, [738298]
[2025-10-12 07:55:52] 2025-10-12 11:55:06,293 | INFO     | zombie collector waiting for pid 738298
[2025-10-12 07:55:52] 2025-10-12 11:55:06,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:55:52] 2025-10-12 11:55:06,293 | INFO     | collected zombie processes
[2025-10-12 07:55:52] 2025-10-12 11:55:06,293 | INFO     | will attempt to kill all subprocesses of pid=738298
[2025-10-12 07:55:52] 2025-10-12 11:55:06,358 | INFO     | process IDs to be killed: [738298] (in reverse order)
[2025-10-12 07:55:52] 2025-10-12 11:55:06,384 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:55:52] 2025-10-12 11:55:06,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:55:52] 2025-10-12 11:55:06,386 | INFO     | did not find any defunct processes belonging to 738298
[2025-10-12 07:55:52] 2025-10-12 11:55:06,388 | INFO     | did not find any defunct processes belonging to 738298
[2025-10-12 07:55:52] 2025-10-12 11:55:06,388 | INFO     | ready for new job
[2025-10-12 07:55:52] 2025-10-12 11:55:06,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:55:52] 2025-10-12 11:55:06,389 | INFO     | ***************************************
[2025-10-12 07:55:52] 2025-10-12 11:55:06,389 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:55:52] 2025-10-12 11:55:06,389 | INFO     | ***************************************
[2025-10-12 07:55:52] 2025-10-12 11:55:06,389 | INFO     | 
[2025-10-12 07:55:52] 2025-10-12 11:55:06,389 | INFO     | architecture information:
[2025-10-12 07:55:52] 2025-10-12 11:55:06,390 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:55:52] 2025-10-12 11:55:06,395 | INFO     | cat /etc/os-release:
[2025-10-12 07:55:52] NAME="CentOS Linux"
[2025-10-12 07:55:52] VERSION="7 (Core)"
[2025-10-12 07:55:52] ID="centos"
[2025-10-12 07:55:52] ID_LIKE="rhel fedora"
[2025-10-12 07:55:52] VERSION_ID="7"
[2025-10-12 07:55:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:55:52] ANSI_COLOR="0;31"
[2025-10-12 07:55:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:55:52] HOME_URL="https://www.centos.org/"
[2025-10-12 07:55:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:55:52] 
[2025-10-12 07:55:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:55:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:55:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:55:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:55:52] 
[2025-10-12 07:55:52] 2025-10-12 11:55:06,395 | INFO     | ***************************************
[2025-10-12 07:55:52] 2025-10-12 11:55:06,898 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 07:55:52] 2025-10-12 11:55:06,906 | INFO     | sufficient remaining disk space (1819484880896 B)
[2025-10-12 07:55:52] 2025-10-12 11:55:06,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:55:52] 2025-10-12 11:55:06,907 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:55:52] 2025-10-12 11:55:06,907 | INFO     | update_server=False
[2025-10-12 07:55:52] 2025-10-12 11:55:06,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:55:52] 2025-10-12 11:55:06,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:55:52] 2025-10-12 11:55:07,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:55:52] 2025-10-12 11:55:07,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:55:52] 2025-10-12 11:55:07,179 | INFO     | aborting loop
[2025-10-12 07:55:52] 2025-10-12 11:55:07,795 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:55:52] 2025-10-12 11:55:07,912 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:07,912 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:07,915 | INFO     | all job control threads have been joined
[2025-10-12 07:55:52] 2025-10-12 11:55:07,935 | INFO     | all data control threads have been joined
[2025-10-12 07:55:52] 2025-10-12 11:55:07,968 | INFO     | all payload control threads have been joined
[2025-10-12 07:55:52] 2025-10-12 11:55:08,184 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,334 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,334 | INFO     | [job] validate thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,346 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,382 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,424 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,673 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,920 | INFO     | [job] control thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,940 | INFO     | [data] control thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:08,973 | INFO     | [payload] control thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:09,150 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:09,198 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:11,801 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:17,111 | INFO     | job.realtimelogging is not enabled
[2025-10-12 07:55:52] 2025-10-12 11:55:18,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:55:52] 2025-10-12 11:55:37,188 | INFO     | PID=731655 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 07:55:52] 2025-10-12 11:55:37,188 | INFO     | .. there are 2 such processes running
[2025-10-12 07:55:52] 2025-10-12 11:55:37,188 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:55:52] 2025-10-12 11:55:37,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:55:52] 2025-10-12 11:55:37,188 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:55:52] 2025-10-12 11:55:45,793 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:55:52] 2025-10-12 11:55:47,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135252214159168)>', '<ExcThread(monitor, started 135251707803392)>']
[2025-10-12 07:55:52] 2025-10-12 11:55:48,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:55:52] 2025-10-12 11:55:48,239 | INFO     | [monitor] control thread has ended
[2025-10-12 07:55:52] 2025-10-12 11:55:52,678 | INFO     | all workflow threads have been joined
[2025-10-12 07:55:52] 2025-10-12 11:55:52,678 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:55:52] 2025-10-12 11:55:52,678 | INFO     | traces error code: 0
[2025-10-12 07:55:52] 2025-10-12 11:55:52,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:55:52] 2025-10-12 11:55:52,721 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:55:52] 2025-10-12 11:55:52,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:55:52] 2025-10-12 11:55:52,724 [wrapper] pilotpid: 731655
[2025-10-12 07:55:52] 2025-10-12 11:55:52,725 [wrapper] Pilot exit status: 0
[2025-10-12 07:55:52] 2025-10-12 11:55:52,728 [wrapper] pandaids: 6839590831
[2025-10-12 07:55:52] 2025-10-12 11:55:52,743 [wrapper] cleanup supervisor_pilot  747855 731656
[2025-10-12 07:55:52] 2025-10-12 11:55:52,744 [wrapper] Test setup, not cleaning
[2025-10-12 07:55:52] 2025-10-12 11:55:52,745 [wrapper] apfmon messages muted
[2025-10-12 07:55:52] 2025-10-12 11:55:52,746 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:55:52] 2025-10-12 11:55:52,747 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:55:52]  *** Error codes and diagnostics ***
[2025-10-12 07:55:52]     "exeErrorCode": 0,
[2025-10-12 07:55:52]     "exeErrorDiag": "",
[2025-10-12 07:55:52]     "pilotErrorCode": 0,
[2025-10-12 07:55:52]     "pilotErrorDiag": "",
[2025-10-12 07:55:52]  *** Listing of results directory ***
[2025-10-12 07:55:52] total 405988
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc    557409 Oct 12 02:14 pilot3.tar.gz
[2025-10-12 07:55:52] -rwx------ 1 boinc boinc     36292 Oct 12 02:22 runpilot2-wrapper.sh
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc      5112 Oct 12 02:22 queuedata.json
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc       100 Oct 12 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:55:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 07:31 run_atlas
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc       105 Oct 12 07:31 job.xml
[2025-10-12 07:55:52] -rw-r--r-- 2 boinc boinc 220843442 Oct 12 07:31 EVNT.46676267._004345.pool.root.1
[2025-10-12 07:55:52] drwxrwx--x 2 boinc boinc      4096 Oct 12 07:31 shared
[2025-10-12 07:55:52] -rw-r--r-- 2 boinc boinc    569680 Oct 12 07:31 input.tar.gz
[2025-10-12 07:55:52] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:31 start_atlas.sh
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:31 boinc_setup_complete
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc     11824 Oct 12 07:31 init_data.xml
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc         0 Oct 12 07:31 boinc_lockfile
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc      2550 Oct 12 07:31 pandaJob.out
[2025-10-12 07:55:52] -rw------- 1 boinc boinc    975520 Oct 12 07:31 agis_schedconf.cvmfs.json
[2025-10-12 07:55:52] -rw------- 1 boinc boinc   1560580 Oct 12 07:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:55:52] drwx------ 5 boinc boinc      4096 Oct 12 07:31 pilot3
[2025-10-12 07:55:52] -rw------- 1 boinc boinc 189826474 Oct 12 07:54 HITS.46676269._072399.pool.root.1
[2025-10-12 07:55:52] -rw------- 1 boinc boinc        95 Oct 12 07:54 pilot_heartbeat.json
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc       529 Oct 12 07:54 boinc_task_state.xml
[2025-10-12 07:55:52] -rw------- 1 boinc boinc      1015 Oct 12 07:54 memory_monitor_summary.json
[2025-10-12 07:55:52] -rw------- 1 boinc boinc    331353 Oct 12 07:54 log.46676269._072399.job.log.tgz.1
[2025-10-12 07:55:52] -rw------- 1 boinc boinc      7767 Oct 12 07:55 heartbeat.json
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc        27 Oct 12 07:55 wrapper_checkpoint.txt
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc      8192 Oct 12 07:55 boinc_mmap_file
[2025-10-12 07:55:52] -rw------- 1 boinc boinc      4896 Oct 12 07:55 pilotlog.txt
[2025-10-12 07:55:52] -rw------- 1 boinc boinc    246422 Oct 12 07:55 log.46676269._072399.job.log.1
[2025-10-12 07:55:52] -rw------- 1 boinc boinc       357 Oct 12 07:55 output.list
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc       620 Oct 12 07:55 runtime_log
[2025-10-12 07:55:52] -rw------- 1 boinc boinc    593920 Oct 12 07:55 result.tar.gz
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc      8741 Oct 12 07:55 runtime_log.err
[2025-10-12 07:55:52] -rw------- 1 boinc boinc       654 Oct 12 07:55 8T5MDm8d4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmeLTMDm2eL3An.diag
[2025-10-12 07:55:52] -rw-r--r-- 1 boinc boinc     21791 Oct 12 07:55 stderr.txt
[2025-10-12 07:55:52] HITS file was successfully produced:
[2025-10-12 07:55:52] -rw------- 1 boinc boinc 189826474 Oct 12 07:54 shared/HITS.pool.root.1
[2025-10-12 07:55:52]  *** Contents of shared directory: ***
[2025-10-12 07:55:52] total 402212
[2025-10-12 07:55:52] -rw-r--r-- 2 boinc boinc 220843442 Oct 12 07:31 ATLAS.root_0
[2025-10-12 07:55:52] -rw-r--r-- 2 boinc boinc    569680 Oct 12 07:31 input.tar.gz
[2025-10-12 07:55:52] -rw-r--r-- 2 boinc boinc     15120 Oct 12 07:31 start_atlas.sh
[2025-10-12 07:55:52] -rw------- 1 boinc boinc 189826474 Oct 12 07:54 HITS.pool.root.1
[2025-10-12 07:55:52] -rw------- 1 boinc boinc    593920 Oct 12 07:55 result.tar.gz
07:55:54 (727807): run_atlas exited; CPU time 14626.730051
07:55:54 (727807): called boinc_finish(0)

</stderr_txt>
]]>

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