Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 22:21:32 (20396): vboxwrapper version 26210
2025-10-12 22:21:32 (20396): BOINC client version: 8.2.4
2025-10-12 22:21:32 (20396): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-12 22:21:32 (20396): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 22:21:33 (20396): Create VM. (boinc_44841ed2b5726329, slot#1)
2025-10-12 22:21:33 (20396): Setting Memory Size for VM. (4300MB)
2025-10-12 22:21:33 (20396): Setting CPU Count for VM. (3)
2025-10-12 22:21:34 (20396): Setting Chipset Options for VM.
2025-10-12 22:21:34 (20396): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 22:21:34 (20396): Setting Boot Options for VM.
2025-10-12 22:21:35 (20396): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 22:21:35 (20396): Enabling VM Network Access.
2025-10-12 22:21:35 (20396): Disabling USB Support for VM.
2025-10-12 22:21:36 (20396): Disabling COM Port Support for VM.
2025-10-12 22:21:36 (20396): Disabling LPT Port Support for VM.
2025-10-12 22:21:36 (20396): Disabling Audio Support for VM.
2025-10-12 22:21:37 (20396): Disabling Clipboard Support for VM.
2025-10-12 22:21:37 (20396): Disabling Drag and Drop Support for VM.
2025-10-12 22:21:37 (20396): Adding storage controller(s) to VM.
2025-10-12 22:21:37 (20396): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 22:21:40 (20396): Adding VirtualBox Guest Additions to VM.
2025-10-12 22:21:40 (20396): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 22:21:41 (20396): forwarding host port 64831 to guest port 80
2025-10-12 22:21:41 (20396): Enabling remote desktop for VM.
2025-10-12 22:21:41 (20396): Required extension pack not installed, remote desktop not enabled.
2025-10-12 22:21:41 (20396): Enabling shared directory for VM.
2025-10-12 22:21:42 (20396): Starting VM using VBoxManage interface. (boinc_44841ed2b5726329, slot#1)
2025-10-12 22:21:46 (20396): Successfully started VM. (PID = '26464')
2025-10-12 22:21:46 (20396): Reporting VM Process ID to BOINC.
2025-10-12 22:21:46 (20396): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-12 22:21:46 (20396): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 22:21:46 (20396): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 22:21:46 (20396): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 22:21:46 (20396): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 22:21:46 (20396): Detected: Web Application Enabled (http://localhost:64831)
2025-10-12 22:21:46 (20396): Preference change detected
2025-10-12 22:21:46 (20396): Setting CPU throttle for VM. (100%)
2025-10-12 22:21:47 (20396): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 22:21:48 (20396): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 22:21:48 (20396): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 22:21:51 (20396): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 22:21:51 (20396): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 22:21:51 (20396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 22:21:58 (20396): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 22:21:58 (20396): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 22:22:06 (20396): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000071 main     Log opened 2025-10-12T22:22:04.525530000Z
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000204 main     OS Product: Linux
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000238 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000265 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000290 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000290 main     Process ID: 1317
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000291 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 22:22:06 (20396): Guest Log: 00:00:00.000826 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 22:22:06 (20396): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 22:22:06 (20396): Guest Log: [INFO] Mounting shared directory
2025-10-12 22:22:06 (20396): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 22:22:16 (20396): Guest Log: 00:00:10.107376 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 063 157 000ns (GuestNow=1 760 304 136 463 825 000 ns GuestLast=1 760 307 724 526 982 000 ns fSetTimeLastLoop=true )
2025-10-12 22:22:41 (20396): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 22:22:41 (20396): Guest Log: [INFO] Detected branch: prod
2025-10-12 22:22:42 (20396): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 22:22:42 (20396): Guest Log: Copying input files
2025-10-12 22:22:42 (20396): Guest Log: Copied input files into RunAtlas.
2025-10-12 22:22:43 (20396): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 22:22:43 (20396): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 22:22:43 (20396): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 22:22:43 (20396): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 22:22:52 (20396): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 22:22:52 (20396): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 22:22:52 (20396): Guest Log: 2.6.3.0 1600 0 30160 151638 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 22:22:54 (20396): Guest Log: copied the webapp to /var/www
2025-10-12 22:22:54 (20396): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-12 22:22:54 (20396): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-12 22:22:55 (20396): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 22:22:55 (20396): Guest Log:  *** Starting ATLAS job. (PandaID=6839591017 taskID=46676269) ***
2025-10-13 00:01:49 (20396): Status Report: Elapsed Time: '6000.014910'
2025-10-13 00:01:49 (20396): Status Report: CPU Time: '16899.203125'
2025-10-13 00:10:08 (20396): VM state change detected. (old = 'running', new = 'paused')
2025-10-13 01:18:08 (20396): VM state change detected. (old = 'paused', new = 'running')
2025-10-13 01:18:12 (20396): Guest Log: 01:48:02.657900 timesync vgsvcTimeSyncWorker: Radical host time change: 4 082 664 000 000ns (HostNow=1 760 314 680 351 000 000 ns HostLast=1 760 310 597 687 000 000 ns)
2025-10-13 01:18:22 (20396): Guest Log: 01:48:12.658867 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 081 337 666 000ns (GuestNow=1 760 314 690 352 000 000 ns GuestLast=1 760 310 609 014 334 000 ns fSetTimeLastLoop=true )
2025-10-13 02:00:26 (20396): Guest Log:  *** Job finished ***
2025-10-13 02:00:26 (20396): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:08,821 | INFO     | PID=5973 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:08,822 | INFO     | found 0 job(s) in 20 queues
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:08,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:08,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:08,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:08,822 | INFO     | [monitor] control thread has ended
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,648 | INFO     | all workflow threads have been joined
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,648 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,648 | INFO     | traces error code: 0
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,648 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,738 [wrapper] ==== pilot stdout END ====
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,741 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,743 [wrapper] pilotpid: 5973
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,746 [wrapper] Pilot exit status: 0
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,815 [wrapper] pandaids: 6839591017
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,832 [wrapper] cleanup supervisor_pilot  6989 5974
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,834 [wrapper] Test setup, not cleaning
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,837 [wrapper] apfmon messages muted
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,839 [wrapper] ==== wrapper stdout END ====
2025-10-13 02:00:26 (20396): Guest Log: 2025-10-13 01:00:13,841 [wrapper] ==== wrapper stderr END ====
2025-10-13 02:00:26 (20396): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 02:00:26 (20396): Guest Log:     "exeErrorCode": 0,
2025-10-13 02:00:26 (20396): Guest Log:     "exeErrorDiag": "",
2025-10-13 02:00:26 (20396): Guest Log:     "pilotErrorCode": 0,
2025-10-13 02:00:26 (20396): Guest Log:     "pilotErrorDiag": "",
2025-10-13 02:00:26 (20396): Guest Log:  *** Listing of results directory ***
2025-10-13 02:00:26 (20396): Guest Log: total 197684
2025-10-13 02:00:26 (20396): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 06:14 pilot3.tar.gz
2025-10-13 02:00:26 (20396): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 06:23 runpilot2-wrapper.sh
2025-10-13 02:00:26 (20396): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 06:23 queuedata.json
2025-10-13 02:00:26 (20396): Guest Log: -rwxr-xr-x. 1 atlas atlas      8739 Oct 12 21:22 init_data.xml
2025-10-13 02:00:26 (20396): Guest Log: -rwxr-xr-x. 1 atlas atlas    569673 Oct 12 21:22 input.tar.gz
2025-10-13 02:00:26 (20396): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 21:22 start_atlas.sh
2025-10-13 02:00:26 (20396): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 21:22 EVNT.46676267._004347.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 02:00:26 (20396): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 21:22 pandaJob.out
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 12 21:24 agis_schedconf.cvmfs.json
2025-10-13 02:00:26 (20396): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 21:24 pilot3
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas 195537844 Oct 13 00:59 HITS.46676269._072449.pool.root.1
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas        97 Oct 13 00:59 pilot_heartbeat.json
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas      1037 Oct 13 00:59 memory_monitor_summary.json
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 00:59 agis_ddmendpoints.agis.ALL.json
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas    300205 Oct 13 00:59 log.46676269._072449.job.log.tgz.1
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas      7764 Oct 13 00:59 heartbeat.json
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 13 01:00 pilotlog.txt
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas   1226782 Oct 13 01:00 log.46676269._072449.job.log.1
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 01:00 output.list
2025-10-13 02:00:26 (20396): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 01:00 runtime_log
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas   1546240 Oct 13 01:00 result.tar.gz
2025-10-13 02:00:26 (20396): Guest Log: -rw-r--r--. 1 atlas atlas      8672 Oct 13 01:00 runtime_log.err
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas       670 Oct 13 01:00 PeRNDmvf4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqLTMDm6z1qMm.diag
2025-10-13 02:00:26 (20396): Guest Log: Looking for outputfile HITS.46676269._072449.pool.root.1
2025-10-13 02:00:26 (20396): Guest Log: HITS file was successfully produced
2025-10-13 02:00:26 (20396): Guest Log: -rw-------. 1 atlas atlas 195537844 Oct 13 00:59 /home/atlas/RunAtlas/HITS.46676269._072449.pool.root.1
2025-10-13 02:00:27 (20396): Guest Log: Successfully finished the ATLAS job!
2025-10-13 02:00:27 (20396): Guest Log: Copying the results back to the shared directory!
2025-10-13 02:00:27 (20396): Guest Log:  *** Contents of shared directory: ***
2025-10-13 02:00:27 (20396): Guest Log: total 407564
2025-10-13 02:00:27 (20396): Guest Log: -rwxrwxrwx. 1 root root 219654292 Oct 12 21:21 ATLAS.root_0
2025-10-13 02:00:27 (20396): Guest Log: -rwxrwxrwx. 1 root root 195537844 Oct 13  2025 HITS.pool.root.1
2025-10-13 02:00:27 (20396): Guest Log: -rwxrwxrwx. 1 root root      8739 Oct 12 21:21 init_data.xml
2025-10-13 02:00:27 (20396): Guest Log: -rwxrwxrwx. 1 root root    569673 Oct 12 11:24 input.tar.gz
2025-10-13 02:00:27 (20396): Guest Log: -rwxrwxrwx. 1 root root   1546240 Oct 13  2025 result.tar.gz
2025-10-13 02:00:27 (20396): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 11:24 start_atlas.sh
2025-10-13 02:00:27 (20396): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 02:00:27 (20396): VM Completion File Detected.
2025-10-13 02:00:27 (20396): Powering off VM.
2025-10-13 02:00:28 (20396): Successfully stopped VM.
2025-10-13 02:00:28 (20396): Deregistering VM. (boinc_44841ed2b5726329, slot#1)
2025-10-13 02:00:28 (20396): Removing network bandwidth throttle group from VM.
2025-10-13 02:00:28 (20396): Removing VM from VirtualBox.
2025-10-13 02:00:33 (20396): called boinc_finish(0)

</stderr_txt>
]]>

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