Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:23:37 (31710): wrapper (7.7.26015): starting
13:23:37 (31710): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 13:23:37] Arguments: --nthreads 8
[2025-10-12 13:23:37] Threads: 8
[2025-10-12 13:23:37] Checking for CVMFS
[2025-10-12 13:23:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:23:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:23:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:23:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:23:43] 2.11.2.0 14339 220525 142228 151619 3 11 20535477 25165824 4632 130560 0 134060124 99.892 69665918 4449 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 13:23:43] CVMFS is ok
[2025-10-12 13:23:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:23:43] Checking for apptainer binary...
[2025-10-12 13:23:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:23:43] Running /usr/bin/apptainer --version
[2025-10-12 13:23:43] apptainer version 1.3.2-1.el7
[2025-10-12 13:23:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:24:11] cg-vwn496.simple-grid.lan
[2025-10-12 13:24:11] apptainer works
[2025-10-12 13:24:11] Set ATHENA_PROC_NUMBER=8
[2025-10-12 13:24:11] Set ATHENA_CORE_NUMBER=8
[2025-10-12 13:24:11] Starting ATLAS job with PandaID=6839590809
[2025-10-12 13:24:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:01:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:01:19] 2025-10-12 15:00:19,984 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:01:19] 2025-10-12 15:00:19,985 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-10-12 17:01:19] 2025-10-12 15:00:19,986 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6839590809/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:01:19] 2025-10-12 15:00:19,987 | INFO     | extracted standard info from prmon json
[2025-10-12 17:01:19] 2025-10-12 15:00:19,987 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:01:19] 2025-10-12 15:00:19,987 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:01:19] 2025-10-12 15:00:19,988 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:01:19] 2025-10-12 15:00:19,988 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:01:19] 2025-10-12 15:00:19,996 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:01:19] 2025-10-12 15:00:19,996 | INFO     | sum of square deviations: 2480604650.0
[2025-10-12 17:01:19] 2025-10-12 15:00:19,998 | INFO     | sum of deviations: 20762935511.999996
[2025-10-12 17:01:19] 2025-10-12 15:00:19,998 | INFO     | mean x: 1760275019.5
[2025-10-12 17:01:19] 2025-10-12 15:00:19,998 | INFO     | mean y: 2480916.77
[2025-10-12 17:01:19] 2025-10-12 15:00:19,998 | INFO     | -- intersect: -14731215850.77538
[2025-10-12 17:01:19] 2025-10-12 15:00:19,998 | INFO     | intersect: -14731215850.77538
[2025-10-12 17:01:19] 2025-10-12 15:00:19,999 | INFO     | chi2: 4.679695864081648
[2025-10-12 17:01:19] 2025-10-12 15:00:19,999 | INFO     | sum of square deviations: 2299168690.0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,000 | INFO     | sum of deviations: 33519812259.00004
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | mean x: 1760274867.0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | mean y: 2491412.6666666665
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | -- intersect: -25660733440.171886
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | intersect: -25660733440.171886
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | chi2: 3.946822565418177
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | current chi2=3.946822565418177 (change=15.6607036001749 %)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,001 | INFO     | right removable region: 194
[2025-10-12 17:01:19] 2025-10-12 15:00:20,002 | INFO     | sum of square deviations: 2299168690.0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,003 | INFO     | sum of deviations: -40060972860.0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,003 | INFO     | mean x: 1760275172.0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,003 | INFO     | mean y: 2531914.671794872
[2025-10-12 17:01:19] 2025-10-12 15:00:20,003 | INFO     | -- intersect: 30673763737.867786
[2025-10-12 17:01:19] 2025-10-12 15:00:20,004 | INFO     | intersect: 30673763737.867786
[2025-10-12 17:01:19] 2025-10-12 15:00:20,004 | INFO     | chi2: 1.0701200601171243
[2025-10-12 17:01:19] 2025-10-12 15:00:20,004 | INFO     | current chi2=1.0701200601171243 (change=77.13270068829299 %)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,004 | INFO     | sum of square deviations: 2126802667.5
[2025-10-12 17:01:19] 2025-10-12 15:00:20,005 | INFO     | sum of deviations: -46583390174.000015
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | mean x: 1760275324.5
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | mean y: 2537606.8736842107
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | -- intersect: 38557873984.7598
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | intersect: 38557873984.7598
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | chi2: 0.9650249678148033
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | current chi2=0.9650249678148033 (change=9.820869285528431 %)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,006 | INFO     | left removable region: 20
[2025-10-12 17:01:19] 2025-10-12 15:00:20,007 | INFO     | sum of square deviations: 1633472487.5
[2025-10-12 17:01:19] 2025-10-12 15:00:20,008 | INFO     | sum of deviations: -22085151839.5
[2025-10-12 17:01:19] 2025-10-12 15:00:20,008 | INFO     | mean x: 1760275446.5
[2025-10-12 17:01:19] 2025-10-12 15:00:20,008 | INFO     | mean y: 2539558.063218391
[2025-10-12 17:01:19] 2025-10-12 15:00:20,008 | INFO     | -- intersect: 23802114275.599537
[2025-10-12 17:01:19] 2025-10-12 15:00:20,008 | INFO     | intersect: 23802114275.599537
[2025-10-12 17:01:19] 2025-10-12 15:00:20,009 | INFO     | chi2: 0.1515824223515892
[2025-10-12 17:01:19] 2025-10-12 15:00:20,009 | INFO     | -- intersect: 23802114275.599537
[2025-10-12 17:01:19] 2025-10-12 15:00:20,009 | INFO     | current memory leak: -13.52 B/s (using 174 data points, chi2=0.15)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,009 | INFO     | could have reported an average CPU frequency of 2249 MHz (10 samples)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | ..............................
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . Timing measurements:
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . get job = 0 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . initial setup = 8 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . payload setup = 128 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . stage-in = 0 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . payload execution = 12325 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . stage-out = 3 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | . log creation = 1 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,010 | INFO     | ..............................
[2025-10-12 17:01:19] 2025-10-12 15:00:20,161 | INFO     | 
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | job summary report
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | --------------------------------------------------
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | PanDA job id: 6839590809
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | task id: 46676269
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | errors: (none)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | pilot state: finished 
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | transexitcode: 0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | exeerrorcode: 0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,162 | INFO     | exeerrordiag: 
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | exitcode: 0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | exitmsg: OK
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | cpuconsumptiontime: 46451 s
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | nevents: 400
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | neventsw: 0
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | pid: 10009
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | pgrp: 10009
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | corecount: 8
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | event service: False
[2025-10-12 17:01:19] 2025-10-12 15:00:20,163 | INFO     | sizes: {0: 2348636, 1: 2348835, 12: 2348835, 23: 2348863, 33: 2348891, 44: 2348947, 55: 2349103, 65: 2349131, 76: 2349159, 87: 2349215, 94: 2349505, 98: 2349813, 1
[2025-10-12 17:01:19] 2025-10-12 15:00:20,164 | INFO     | --------------------------------------------------
[2025-10-12 17:01:19] 2025-10-12 15:00:20,164 | INFO     | 
[2025-10-12 17:01:19] 2025-10-12 15:00:20,164 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-12 17:01:19] 2025-10-12 15:00:20,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:01:19] 2025-10-12 15:00:20,666 | INFO     | job 6839590809 has completed (purged errors)
[2025-10-12 17:01:19] 2025-10-12 15:00:20,667 | INFO     | overall cleanup function is called
[2025-10-12 17:01:19] 2025-10-12 15:00:21,676 | INFO     | --- collectZombieJob: --- 10, [10009]
[2025-10-12 17:01:19] 2025-10-12 15:00:21,676 | INFO     | zombie collector waiting for pid 10009
[2025-10-12 17:01:19] 2025-10-12 15:00:21,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:01:19] 2025-10-12 15:00:21,676 | INFO     | collected zombie processes
[2025-10-12 17:01:19] 2025-10-12 15:00:21,676 | INFO     | will attempt to kill all subprocesses of pid=10009
[2025-10-12 17:01:19] 2025-10-12 15:00:21,816 | INFO     | process IDs to be killed: [10009] (in reverse order)
[2025-10-12 17:01:19] 2025-10-12 15:00:22,961 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:01:19] 2025-10-12 15:00:22,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:01:19] 2025-10-12 15:00:22,974 | INFO     | did not find any defunct processes belonging to 10009
[2025-10-12 17:01:19] 2025-10-12 15:00:22,982 | INFO     | did not find any defunct processes belonging to 10009
[2025-10-12 17:01:19] 2025-10-12 15:00:22,982 | INFO     | ready for new job
[2025-10-12 17:01:19] 2025-10-12 15:00:22,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:01:19] 2025-10-12 15:00:22,984 | INFO     | ***************************************
[2025-10-12 17:01:19] 2025-10-12 15:00:22,985 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:01:19] 2025-10-12 15:00:22,985 | INFO     | ***************************************
[2025-10-12 17:01:19] 2025-10-12 15:00:22,985 | INFO     | 
[2025-10-12 17:01:19] 2025-10-12 15:00:22,985 | INFO     | pilot is running in a VM
[2025-10-12 17:01:19] 2025-10-12 15:00:22,987 | INFO     | architecture information:
[2025-10-12 17:01:19] 2025-10-12 15:00:22,993 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:01:19] 2025-10-12 15:00:23,261 | INFO     | cat /etc/os-release:
[2025-10-12 17:01:19] NAME="CentOS Linux"
[2025-10-12 17:01:19] VERSION="7 (Core)"
[2025-10-12 17:01:19] ID="centos"
[2025-10-12 17:01:19] ID_LIKE="rhel fedora"
[2025-10-12 17:01:19] VERSION_ID="7"
[2025-10-12 17:01:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:01:19] ANSI_COLOR="0;31"
[2025-10-12 17:01:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:01:19] HOME_URL="https://www.centos.org/"
[2025-10-12 17:01:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:01:19] 
[2025-10-12 17:01:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:01:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:01:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:01:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:01:19] 
[2025-10-12 17:01:19] 2025-10-12 15:00:23,261 | INFO     | ***************************************
[2025-10-12 17:01:19] 2025-10-12 15:00:23,769 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-12 17:01:19] 2025-10-12 15:00:23,998 | INFO     | sufficient remaining disk space (496612933632 B)
[2025-10-12 17:01:19] 2025-10-12 15:00:23,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:01:19] 2025-10-12 15:00:23,999 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:01:19] 2025-10-12 15:00:23,999 | INFO     | update_server=False
[2025-10-12 17:01:19] 2025-10-12 15:00:23,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:01:19] 2025-10-12 15:00:24,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:01:19] 2025-10-12 15:00:24,332 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:01:19] 2025-10-12 15:00:24,332 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:01:19] 2025-10-12 15:00:24,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:01:19] 2025-10-12 15:00:24,332 | INFO     | will abort loop
[2025-10-12 17:01:19] 2025-10-12 15:00:24,450 | INFO     | all job control threads have been joined
[2025-10-12 17:01:19] 2025-10-12 15:00:24,795 | INFO     | all data control threads have been joined
[2025-10-12 17:01:19] 2025-10-12 15:00:24,999 | INFO     | all payload control threads have been joined
[2025-10-12 17:01:19] 2025-10-12 15:00:25,005 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,028 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:01:19] 2025-10-12 15:00:25,175 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:01:19] 2025-10-12 15:00:25,238 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,337 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,456 | INFO     | [job] control thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,601 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,769 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,773 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,801 | INFO     | [data] control thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:25,806 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:26,005 | INFO     | [payload] control thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:26,181 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:26,261 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:26,491 | INFO     | [job] validate thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:26,492 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:27,035 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:28,018 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:01:19] 2025-10-12 15:00:52,252 | INFO     | PID=3435 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 17:01:19] 2025-10-12 15:00:52,252 | INFO     | .. there are 9 such processes running
[2025-10-12 17:01:19] 2025-10-12 15:00:52,253 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:01:19] 2025-10-12 15:00:52,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:01:19] 2025-10-12 15:00:52,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:01:19] 2025-10-12 15:01:09,296 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:01:19] 2025-10-12 15:01:10,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996619368256)>', '<ExcThread(monitor, started 139996153485056)>']
[2025-10-12 17:01:19] 2025-10-12 15:01:11,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:01:19] 2025-10-12 15:01:11,369 | INFO     | [monitor] control thread has ended
[2025-10-12 17:01:19] 2025-10-12 15:01:15,423 | INFO     | all workflow threads have been joined
[2025-10-12 17:01:19] 2025-10-12 15:01:15,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:01:19] 2025-10-12 15:01:15,423 | INFO     | traces error code: 0
[2025-10-12 17:01:19] 2025-10-12 15:01:15,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:01:19] 2025-10-12 15:01:15,732 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:01:19] 2025-10-12 15:01:15,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:01:19] 2025-10-12 15:01:15,956 [wrapper] pilotpid: 3435
[2025-10-12 17:01:19] 2025-10-12 15:01:16,020 [wrapper] Pilot exit status: 0
[2025-10-12 17:01:19] 2025-10-12 15:01:16,617 [wrapper] pandaids: 6839590809
[2025-10-12 17:01:19] 2025-10-12 15:01:17,485 [wrapper] cleanup supervisor_pilot  1450 3436
[2025-10-12 17:01:19] 2025-10-12 15:01:17,542 [wrapper] Test setup, not cleaning
[2025-10-12 17:01:19] 2025-10-12 15:01:17,598 [wrapper] apfmon messages muted
[2025-10-12 17:01:19] 2025-10-12 15:01:17,649 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:01:19] 2025-10-12 15:01:17,697 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:01:19]  *** Error codes and diagnostics ***
[2025-10-12 17:01:19]     "exeErrorCode": 0,
[2025-10-12 17:01:19]     "exeErrorDiag": "",
[2025-10-12 17:01:19]     "pilotErrorCode": 0,
[2025-10-12 17:01:19]     "pilotErrorDiag": "",
[2025-10-12 17:01:19]  *** Listing of results directory ***
[2025-10-12 17:01:19] total 404988
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc      5112 Oct 12 08:16 queuedata.json
[2025-10-12 17:01:19] -rwx------. 1 boinc boinc     36292 Oct 12 08:17 runpilot2-wrapper.sh
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc       100 Oct 12 13:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:01:19] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 13:23 run_atlas
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc       105 Oct 12 13:23 job.xml
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc      6391 Oct 12 13:23 init_data.xml
[2025-10-12 17:01:19] -rw-r--r--. 2 boinc boinc 219719287 Oct 12 13:23 EVNT.46676267._004344.pool.root.1
[2025-10-12 17:01:19] -rw-r--r--. 2 boinc boinc     15120 Oct 12 13:23 start_atlas.sh
[2025-10-12 17:01:19] drwxrwx--x. 2 boinc boinc        68 Oct 12 13:23 shared
[2025-10-12 17:01:19] -rw-r--r--. 2 boinc boinc    569681 Oct 12 13:23 input.tar.gz
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc         0 Oct 12 13:23 boinc_lockfile
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc      2549 Oct 12 13:24 pandaJob.out
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc    975520 Oct 12 13:27 agis_schedconf.cvmfs.json
[2025-10-12 17:01:19] drwx------. 5 boinc boinc      4096 Oct 12 13:27 pilot3
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc 186812546 Oct 12 16:57 HITS.46676269._072378.pool.root.1
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc       531 Oct 12 16:57 boinc_task_state.xml
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc      1016 Oct 12 16:58 memory_monitor_summary.json
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc   1560580 Oct 12 16:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc    430593 Oct 12 16:58 log.46676269._072378.job.log.tgz.1
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc      7778 Oct 12 17:00 heartbeat.json
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc        95 Oct 12 17:00 pilot_heartbeat.json
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc      8192 Oct 12 17:00 boinc_mmap_file
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc        28 Oct 12 17:00 wrapper_checkpoint.txt
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc      5070 Oct 12 17:01 pilotlog.txt
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc   1708742 Oct 12 17:01 log.46676269._072378.job.log.1
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc       357 Oct 12 17:01 output.list
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc       620 Oct 12 17:01 runtime_log
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc   2160640 Oct 12 17:01 result.tar.gz
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc      8717 Oct 12 17:01 runtime_log.err
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc       657 Oct 12 17:01 d0CNDmtZ4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSoiNDmaz8GNm.diag
[2025-10-12 17:01:19] -rw-r--r--. 1 boinc boinc     20777 Oct 12 17:01 stderr.txt
[2025-10-12 17:01:19] HITS file was successfully produced:
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc 186812546 Oct 12 16:57 shared/HITS.pool.root.1
[2025-10-12 17:01:19]  *** Contents of shared directory: ***
[2025-10-12 17:01:19] total 399696
[2025-10-12 17:01:19] -rw-r--r--. 2 boinc boinc 219719287 Oct 12 13:23 ATLAS.root_0
[2025-10-12 17:01:19] -rw-r--r--. 2 boinc boinc     15120 Oct 12 13:23 start_atlas.sh
[2025-10-12 17:01:19] -rw-r--r--. 2 boinc boinc    569681 Oct 12 13:23 input.tar.gz
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc 186812546 Oct 12 16:57 HITS.pool.root.1
[2025-10-12 17:01:19] -rw-------. 1 boinc boinc   2160640 Oct 12 17:01 result.tar.gz
17:01:21 (31710): run_atlas exited; CPU time 46617.745880
17:01:21 (31710): called boinc_finish(0)

</stderr_txt>
]]>

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