Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:34:07 (675215): wrapper (7.7.26015): starting
07:34:07 (675215): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 07:34:07] Arguments: --nthreads 8
[2025-10-12 07:34:07] Threads: 8
[2025-10-12 07:34:07] Checking for CVMFS
[2025-10-12 07:34:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:34:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:34:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:34:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:34:09] 2.13.2.0 3269412 35673 389628 151619 1 619 32769126 40960001 53481 16776704 0 457034517 99.845 184595886 36797 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 07:34:09] CVMFS is ok
[2025-10-12 07:34:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:34:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:34:09] Further information can be found at the LHC@home message board.
[2025-10-12 07:34:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:34:09] Checking for apptainer binary...
[2025-10-12 07:34:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:34:09] Running /usr/bin/apptainer --version
[2025-10-12 07:34:09] apptainer version 1.4.3-1.el9
[2025-10-12 07:34:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:34:10] c8-16-2.aglt2.org
[2025-10-12 07:34:10] apptainer works
[2025-10-12 07:34:10] Set ATHENA_PROC_NUMBER=8
[2025-10-12 07:34:10] Set ATHENA_CORE_NUMBER=8
[2025-10-12 07:34:10] Starting ATLAS job with PandaID=6839221575
[2025-10-12 07:34:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 08:48:03]  *** The last 200 lines of the pilot log: ***
[2025-10-12 08:48:03] 2025-10-12 12:46:55,450 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6839221575/log.46676269._068587.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._068587.job
[2025-10-12 08:48:03] 2025-10-12 12:46:55,484 | INFO     | adding to output.list: log.46676269._068587.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/b7/log.46676269._068587.job.log.tg
[2025-10-12 08:48:03] 2025-10-12 12:46:55,485 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 08:48:03] 2025-10-12 12:46:55,485 | INFO     | summary of transferred files:
[2025-10-12 08:48:03] 2025-10-12 12:46:55,485 | INFO     |  -- lfn=log.46676269._068587.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 08:48:03] 2025-10-12 12:46:55,485 | INFO     | stage-out finished correctly
[2025-10-12 08:48:03] 2025-10-12 12:46:55,617 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 08:48:03] 2025-10-12 12:46:55,646 | INFO     | time since job start (4325s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:46:55,687 | INFO     | job 6839221575 has state=finished
[2025-10-12 08:48:03] 2025-10-12 12:46:55,687 | INFO     | preparing for final server update for job 6839221575 in state='finished'
[2025-10-12 08:48:03] 2025-10-12 12:46:55,688 | INFO     | this job has now completed (state=finished)
[2025-10-12 08:48:03] 2025-10-12 12:46:55,688 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 08:48:03] 2025-10-12 12:46:55,688 | INFO     | log transfer has been attempted: DONE
[2025-10-12 08:48:03] 2025-10-12 12:46:55,688 | INFO     | job 6839221575 has finished - writing final server update
[2025-10-12 08:48:03] 2025-10-12 12:46:55,688 | INFO     | total number of processed events: 400 (read)
[2025-10-12 08:48:03] 2025-10-12 12:46:55,688 | INFO     | executing command: lscpu
[2025-10-12 08:48:03] 2025-10-12 12:46:55,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 08:48:03] 2025-10-12 12:46:57,381 | INFO     | monitor loop #284: job 0:6839221575 is in state 'finished'
[2025-10-12 08:48:03] 2025-10-12 12:46:57,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:48:03] 2025-10-12 12:46:57,669 | INFO     | time since job start (4327s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:46:59,676 | INFO     | time since job start (4329s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:46:59,886 | INFO     | monitor loop #285: job 0:6839221575 is in state 'finished'
[2025-10-12 08:48:03] 2025-10-12 12:46:59,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:48:03] 2025-10-12 12:47:01,683 | INFO     | time since job start (4331s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:47:02,391 | INFO     | monitor loop #286: job 0:6839221575 is in state 'finished'
[2025-10-12 08:48:03] 2025-10-12 12:47:02,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:48:03] 2025-10-12 12:47:03,689 | INFO     | time since job start (4333s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:47:04,906 | INFO     | monitor loop #287: job 0:6839221575 is in state 'finished'
[2025-10-12 08:48:03] 2025-10-12 12:47:04,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:48:03] 2025-10-12 12:47:05,696 | INFO     | time since job start (4335s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:47:07,410 | INFO     | monitor loop #288: job 0:6839221575 is in state 'finished'
[2025-10-12 08:48:03] 2025-10-12 12:47:07,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:48:03] 2025-10-12 12:47:07,703 | INFO     | time since job start (4337s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:47:09,715 | INFO     | time since job start (4339s) is within the limit (172800.0s)
[2025-10-12 08:48:03] 2025-10-12 12:47:09,915 | INFO     | monitor loop #289: job 0:6839221575 is in state 'finished'
[2025-10-12 08:48:03] 2025-10-12 12:47:09,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 08:48:03] 2025-10-12 12:47:10,804 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 08:48:03] 2025-10-12 12:47:10,816 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.983898437499
[2025-10-12 08:48:03] 2025-10-12 12:47:10,831 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6839221575/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 08:48:03] 2025-10-12 12:47:10,831 | INFO     | extracted standard info from prmon json
[2025-10-12 08:48:03] 2025-10-12 12:47:10,832 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 08:48:03] 2025-10-12 12:47:10,832 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 08:48:03] 2025-10-12 12:47:10,832 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 08:48:03] 2025-10-12 12:47:10,832 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 08:48:03] 2025-10-12 12:47:10,833 | INFO     | fitting pss+swap vs Time
[2025-10-12 08:48:03] 2025-10-12 12:47:10,833 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,833 | INFO     | sum of deviations: -404480752.0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | mean x: 1760271196.0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | mean y: 2165151.253968254
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | -- intersect: 9187326831.20023
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | intersect: 9187326831.20023
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | chi2: 0.0409681897872707
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | -- intersect: 9187326831.20023
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | current memory leak: -5.22 B/s (using 63 data points, chi2=0.04)
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | ..............................
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . Timing measurements:
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . get job = 0 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . initial setup = 4 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . payload setup = 35 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . stage-in = 0 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . payload execution = 4238 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . stage-out = 0 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | . log creation = 0 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,834 | INFO     | ..............................
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | 
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | job summary report
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | --------------------------------------------------
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | PanDA job id: 6839221575
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | task id: 46676269
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | errors: (none)
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | pilot state: finished 
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | transexitcode: 0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | exeerrorcode: 0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | exeerrordiag: 
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | exitcode: 0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,911 | INFO     | exitmsg: OK
[2025-10-12 08:48:03] 2025-10-12 12:47:10,912 | INFO     | cpuconsumptiontime: 23755 s
[2025-10-12 08:48:03] 2025-10-12 12:47:10,912 | INFO     | nevents: 400
[2025-10-12 08:48:03] 2025-10-12 12:47:10,912 | INFO     | neventsw: 0
[2025-10-12 08:48:03] 2025-10-12 12:47:10,912 | INFO     | pid: 701384
[2025-10-12 08:48:03] 2025-10-12 12:47:10,919 | INFO     | pgrp: 701384
[2025-10-12 08:48:03] 2025-10-12 12:47:10,922 | INFO     | corecount: 8
[2025-10-12 08:48:03] 2025-10-12 12:47:10,922 | INFO     | event service: False
[2025-10-12 08:48:03] 2025-10-12 12:47:10,922 | INFO     | sizes: {0: 2348857, 1: 2348857, 11: 2348885, 20: 2349175, 22: 2349203, 4278: 2375256, 4279: 2384310, 4294: 2384448}
[2025-10-12 08:48:03] 2025-10-12 12:47:10,922 | INFO     | --------------------------------------------------
[2025-10-12 08:48:03] 2025-10-12 12:47:10,922 | INFO     | 
[2025-10-12 08:48:03] 2025-10-12 12:47:10,922 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | job 6839221575 has completed (purged errors)
[2025-10-12 08:48:03] 2025-10-12 12:47:11,016 | INFO     | overall cleanup function is called
[2025-10-12 08:48:03] 2025-10-12 12:47:12,025 | INFO     | --- collectZombieJob: --- 10, [701384]
[2025-10-12 08:48:03] 2025-10-12 12:47:12,025 | INFO     | zombie collector waiting for pid 701384
[2025-10-12 08:48:03] 2025-10-12 12:47:12,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 08:48:03] 2025-10-12 12:47:12,025 | INFO     | collected zombie processes
[2025-10-12 08:48:03] 2025-10-12 12:47:12,025 | INFO     | will attempt to kill all subprocesses of pid=701384
[2025-10-12 08:48:03] 2025-10-12 12:47:12,966 | INFO     | process IDs to be killed: [701384] (in reverse order)
[2025-10-12 08:48:03] 2025-10-12 12:47:13,235 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 08:48:03] 2025-10-12 12:47:13,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 08:48:03] 2025-10-12 12:47:13,276 | INFO     | did not find any defunct processes belonging to 701384
[2025-10-12 08:48:03] 2025-10-12 12:47:13,334 | INFO     | did not find any defunct processes belonging to 701384
[2025-10-12 08:48:03] 2025-10-12 12:47:13,334 | INFO     | ready for new job
[2025-10-12 08:48:03] 2025-10-12 12:47:13,334 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 08:48:03] 2025-10-12 12:47:13,344 | INFO     | ***************************************
[2025-10-12 08:48:03] 2025-10-12 12:47:13,344 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 08:48:03] 2025-10-12 12:47:13,344 | INFO     | ***************************************
[2025-10-12 08:48:03] 2025-10-12 12:47:13,344 | INFO     | 
[2025-10-12 08:48:03] 2025-10-12 12:47:13,368 | INFO     | architecture information:
[2025-10-12 08:48:03] 2025-10-12 12:47:13,368 | INFO     | executing command: cat /etc/os-release
[2025-10-12 08:48:03] 2025-10-12 12:47:13,397 | INFO     | cat /etc/os-release:
[2025-10-12 08:48:03] NAME="CentOS Linux"
[2025-10-12 08:48:03] VERSION="7 (Core)"
[2025-10-12 08:48:03] ID="centos"
[2025-10-12 08:48:03] ID_LIKE="rhel fedora"
[2025-10-12 08:48:03] VERSION_ID="7"
[2025-10-12 08:48:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 08:48:03] ANSI_COLOR="0;31"
[2025-10-12 08:48:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 08:48:03] HOME_URL="https://www.centos.org/"
[2025-10-12 08:48:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 08:48:03] 
[2025-10-12 08:48:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 08:48:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 08:48:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 08:48:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 08:48:03] 
[2025-10-12 08:48:03] 2025-10-12 12:47:13,397 | INFO     | ***************************************
[2025-10-12 08:48:03] 2025-10-12 12:47:13,899 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 08:48:03] 2025-10-12 12:47:13,939 | INFO     | sufficient remaining disk space (167439761408 B)
[2025-10-12 08:48:03] 2025-10-12 12:47:13,939 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 08:48:03] 2025-10-12 12:47:13,939 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 08:48:03] 2025-10-12 12:47:13,940 | INFO     | update_server=False
[2025-10-12 08:48:03] 2025-10-12 12:47:13,940 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 08:48:03] 2025-10-12 12:47:13,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:48:03] 2025-10-12 12:47:13,940 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 08:48:03] 2025-10-12 12:47:13,940 | INFO     | aborting loop
[2025-10-12 08:48:03] 2025-10-12 12:47:13,982 | INFO     | all payload control threads have been joined
[2025-10-12 08:48:03] 2025-10-12 12:47:14,756 | INFO     | all data control threads have been joined
[2025-10-12 08:48:03] 2025-10-12 12:47:14,946 | INFO     | [job] job monitor thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:14,947 | INFO     | [job] retrieve thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:14,990 | INFO     | [payload] control thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,074 | INFO     | [payload] validate_post thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,135 | INFO     | [job] validate thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,152 | INFO     | [data] copytool_in thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,230 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 08:48:03] 2025-10-12 12:47:15,243 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,394 | INFO     | all job control threads have been joined
[2025-10-12 08:48:03] 2025-10-12 12:47:15,453 | INFO     | [payload] failed_post thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,598 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,762 | INFO     | [data] control thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:15,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 08:48:03] 2025-10-12 12:47:15,949 | INFO     | [data] copytool_out thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:16,023 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:16,076 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:16,400 | INFO     | [job] control thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:16,937 | INFO     | [job] queue monitor thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:19,240 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 08:48:03] 2025-10-12 12:47:44,115 | INFO     | PID=684025 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 08:48:03] 2025-10-12 12:47:44,115 | INFO     | .. there are 89 such processes running
[2025-10-12 08:48:03] 2025-10-12 12:47:44,116 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 08:48:03] 2025-10-12 12:47:44,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 08:48:03] 2025-10-12 12:47:44,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 08:48:03] 2025-10-12 12:47:57,527 | INFO     | [monitor] cgroup control has ended
[2025-10-12 08:48:03] 2025-10-12 12:47:57,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908973549376)>', '<ExcThread(monitor, started 139908467377920)>']
[2025-10-12 08:48:03] 2025-10-12 12:47:58,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 08:48:03] 2025-10-12 12:47:58,211 | INFO     | [monitor] control thread has ended
[2025-10-12 08:48:03] 2025-10-12 12:48:02,752 | INFO     | all workflow threads have been joined
[2025-10-12 08:48:03] 2025-10-12 12:48:02,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 08:48:03] 2025-10-12 12:48:02,752 | INFO     | traces error code: 0
[2025-10-12 08:48:03] 2025-10-12 12:48:02,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 08:48:03] 2025-10-12 12:48:03,014 [wrapper] ==== pilot stdout END ====
[2025-10-12 08:48:03] 2025-10-12 12:48:03,017 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 08:48:03] 2025-10-12 12:48:03,019 [wrapper] pilotpid: 684025
[2025-10-12 08:48:03] 2025-10-12 12:48:03,023 [wrapper] Pilot exit status: 0
[2025-10-12 08:48:03] 2025-10-12 12:48:03,059 [wrapper] pandaids: 6839221575
[2025-10-12 08:48:03] 2025-10-12 12:48:03,230 [wrapper] cleanup supervisor_pilot 1396380 684026
[2025-10-12 08:48:03] 2025-10-12 12:48:03,232 [wrapper] Test setup, not cleaning
[2025-10-12 08:48:03] 2025-10-12 12:48:03,241 [wrapper] apfmon messages muted
[2025-10-12 08:48:03] 2025-10-12 12:48:03,243 [wrapper] ==== wrapper stdout END ====
[2025-10-12 08:48:03] 2025-10-12 12:48:03,263 [wrapper] ==== wrapper stderr END ====
[2025-10-12 08:48:03]  *** Error codes and diagnostics ***
[2025-10-12 08:48:03]     "exeErrorCode": 0,
[2025-10-12 08:48:03]     "exeErrorDiag": "",
[2025-10-12 08:48:03]     "pilotErrorCode": 0,
[2025-10-12 08:48:03]     "pilotErrorDiag": "",
[2025-10-12 08:48:03]  *** Listing of results directory ***
[2025-10-12 08:48:03] total 414952
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 21:26 pilot3.tar.gz
[2025-10-12 08:48:03] -rwx------. 1 boincer umatlas     36292 Oct 11 21:32 runpilot2-wrapper.sh
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 21:32 queuedata.json
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas       100 Oct 12 07:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 08:48:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 07:34 run_atlas
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas       105 Oct 12 07:34 job.xml
[2025-10-12 08:48:03] -rw-r--r--. 2 boincer umatlas 219601335 Oct 12 07:34 EVNT.46676267._003152.pool.root.1
[2025-10-12 08:48:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:34 start_atlas.sh
[2025-10-12 08:48:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 07:34 shared
[2025-10-12 08:48:03] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 07:34 input.tar.gz
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas         0 Oct 12 07:34 boinc_lockfile
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 07:34 pandaJob.out
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas    975520 Oct 12 07:34 agis_schedconf.cvmfs.json
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 08:48:03] drwx------. 5 boincer umatlas      4096 Oct 12 07:34 pilot3
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 08:45 init_data.xml
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas 199599891 Oct 12 08:46 HITS.46676269._068587.pool.root.1
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas       529 Oct 12 08:46 boinc_task_state.xml
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas      1035 Oct 12 08:46 memory_monitor_summary.json
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas    314383 Oct 12 08:46 log.46676269._068587.job.log.tgz.1
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas      7784 Oct 12 08:47 heartbeat.json
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas        95 Oct 12 08:47 pilot_heartbeat.json
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 08:47 boinc_mmap_file
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas        27 Oct 12 08:47 wrapper_checkpoint.txt
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas      4824 Oct 12 08:48 pilotlog.txt
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas    590288 Oct 12 08:48 log.46676269._068587.job.log.1
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas       357 Oct 12 08:48 output.list
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas       620 Oct 12 08:48 runtime_log
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas    921600 Oct 12 08:48 result.tar.gz
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas       650 Oct 12 08:48 YhULDm67zR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWwSMDmBw9vHn.diag
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 08:48 runtime_log.err
[2025-10-12 08:48:03] -rw-r--r--. 1 boincer umatlas     22377 Oct 12 08:48 stderr.txt
[2025-10-12 08:48:03] HITS file was successfully produced:
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas 199599891 Oct 12 08:46 shared/HITS.pool.root.1
[2025-10-12 08:48:03]  *** Contents of shared directory: ***
[2025-10-12 08:48:03] total 410860
[2025-10-12 08:48:03] -rw-r--r--. 2 boincer umatlas 219601335 Oct 12 07:34 ATLAS.root_0
[2025-10-12 08:48:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:34 start_atlas.sh
[2025-10-12 08:48:03] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 07:34 input.tar.gz
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas 199599891 Oct 12 08:46 HITS.pool.root.1
[2025-10-12 08:48:03] -rw-------. 1 boincer umatlas    921600 Oct 12 08:48 result.tar.gz
08:48:05 (675215): run_atlas exited; CPU time 23905.590402
08:48:05 (675215): called boinc_finish(0)

</stderr_txt>
]]>

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