Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:31:53 (1919): wrapper (7.7.26015): starting
21:31:53 (1919): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:31:53] Arguments: --nthreads 8
[2025-10-12 21:31:53] Threads: 8
[2025-10-12 21:31:53] Checking for CVMFS
[2025-10-12 21:31:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:31:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:31:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:31:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:31:55] 2.11.2.0 14372 220819 137012 151635 3 60 17656586 25165825 4632 130560 0 118532527 99.886 67606272 3336 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 21:31:55] CVMFS is ok
[2025-10-12 21:31:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:31:55] Checking for apptainer binary...
[2025-10-12 21:31:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:31:55] Running /usr/bin/apptainer --version
[2025-10-12 21:31:55] apptainer version 1.3.2-1.el7
[2025-10-12 21:31:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:32:19] cg-vwn440.simple-grid.lan
[2025-10-12 21:32:19] apptainer works
[2025-10-12 21:32:20] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:32:20] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:32:20] Starting ATLAS job with PandaID=6839590998
[2025-10-12 21:32:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:49:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:49:09] 2025-10-12 23:48:10,261 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 01:49:09] 2025-10-12 23:48:10,263 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 01:49:09] 2025-10-12 23:48:10,265 | INFO     | using path: /var/lib/boinc/slots/31/PanDA_Pilot-6839590998/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,266 | INFO     | extracted standard info from prmon json
[2025-10-13 01:49:09] 2025-10-12 23:48:10,266 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:49:09] 2025-10-12 23:48:10,266 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:49:09] 2025-10-12 23:48:10,267 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:49:09] 2025-10-12 23:48:10,267 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:49:09] 2025-10-12 23:48:10,272 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:49:09] 2025-10-12 23:48:10,273 | INFO     | sum of square deviations: 4286517580.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,275 | INFO     | sum of deviations: 45524050448.99999
[2025-10-13 01:49:09] 2025-10-12 23:48:10,276 | INFO     | mean x: 1760305562.5
[2025-10-13 01:49:09] 2025-10-12 23:48:10,276 | INFO     | mean y: 2464390.908333333
[2025-10-13 01:49:09] 2025-10-12 23:48:10,276 | INFO     | -- intersect: -18692487335.5944
[2025-10-13 01:49:09] 2025-10-12 23:48:10,276 | INFO     | intersect: -18692487335.5944
[2025-10-13 01:49:09] 2025-10-12 23:48:10,276 | INFO     | chi2: 4.956376413021914
[2025-10-13 01:49:09] 2025-10-12 23:48:10,277 | INFO     | sum of square deviations: 4024149870.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,279 | INFO     | sum of deviations: 60117578880.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,279 | INFO     | mean x: 1760305410.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,279 | INFO     | mean y: 2472717.3234042553
[2025-10-13 01:49:09] 2025-10-12 23:48:10,279 | INFO     | -- intersect: -26295081488.47106
[2025-10-13 01:49:09] 2025-10-12 23:48:10,279 | INFO     | intersect: -26295081488.47106
[2025-10-13 01:49:09] 2025-10-12 23:48:10,280 | INFO     | chi2: 4.227117528832238
[2025-10-13 01:49:09] 2025-10-12 23:48:10,280 | INFO     | current chi2=4.227117528832238 (change=14.713549242823651 %)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,280 | INFO     | right removable region: 234
[2025-10-13 01:49:09] 2025-10-12 23:48:10,280 | INFO     | sum of square deviations: 4024149870.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,282 | INFO     | sum of deviations: -30124677309.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,283 | INFO     | mean x: 1760305715.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,283 | INFO     | mean y: 2508277.310638298
[2025-10-13 01:49:09] 2025-10-12 23:48:10,283 | INFO     | -- intersect: 13180109346.518213
[2025-10-13 01:49:09] 2025-10-12 23:48:10,283 | INFO     | intersect: 13180109346.518213
[2025-10-13 01:49:09] 2025-10-12 23:48:10,283 | INFO     | chi2: 1.093689280990015
[2025-10-13 01:49:09] 2025-10-12 23:48:10,283 | INFO     | current chi2=1.093689280990015 (change=77.93369207962981 %)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,284 | INFO     | sum of square deviations: 3772712597.5
[2025-10-13 01:49:09] 2025-10-12 23:48:10,286 | INFO     | sum of deviations: -39954685240.0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,287 | INFO     | mean x: 1760305867.5
[2025-10-13 01:49:09] 2025-10-12 23:48:10,287 | INFO     | mean y: 2514161.2782608694
[2025-10-13 01:49:09] 2025-10-12 23:48:10,287 | INFO     | -- intersect: 18644927290.94355
[2025-10-13 01:49:09] 2025-10-12 23:48:10,287 | INFO     | intersect: 18644927290.94355
[2025-10-13 01:49:09] 2025-10-12 23:48:10,287 | INFO     | chi2: 0.9431376626059137
[2025-10-13 01:49:09] 2025-10-12 23:48:10,288 | INFO     | current chi2=0.9431376626059137 (change=13.765483579378312 %)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,288 | INFO     | left removable region: 20
[2025-10-13 01:49:09] 2025-10-12 23:48:10,288 | INFO     | sum of square deviations: 3038856977.5
[2025-10-13 01:49:09] 2025-10-12 23:48:10,290 | INFO     | sum of deviations: -9769689514.500002
[2025-10-13 01:49:09] 2025-10-12 23:48:10,290 | INFO     | mean x: 1760305989.5
[2025-10-13 01:49:09] 2025-10-12 23:48:10,290 | INFO     | mean y: 2514138.462616822
[2025-10-13 01:49:09] 2025-10-12 23:48:10,290 | INFO     | -- intersect: 5661761380.192901
[2025-10-13 01:49:09] 2025-10-12 23:48:10,290 | INFO     | intersect: 5661761380.192901
[2025-10-13 01:49:09] 2025-10-12 23:48:10,291 | INFO     | chi2: 0.11039023008835246
[2025-10-13 01:49:09] 2025-10-12 23:48:10,291 | INFO     | -- intersect: 5661761380.192901
[2025-10-13 01:49:09] 2025-10-12 23:48:10,291 | INFO     | current memory leak: -3.21 B/s (using 214 data points, chi2=0.11)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | ..............................
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | . Timing measurements:
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | . get job = 0 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | . initial setup = 13 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | . payload setup = 132 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,292 | INFO     | . stage-in = 0 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,293 | INFO     | . payload execution = 14748 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,293 | INFO     | . stage-out = 2 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,293 | INFO     | . log creation = 0 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,293 | INFO     | ..............................
[2025-10-13 01:49:09] 2025-10-12 23:48:10,459 | INFO     | 
[2025-10-13 01:49:09] 2025-10-12 23:48:10,459 | INFO     | job summary report
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | --------------------------------------------------
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | PanDA job id: 6839590998
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | task id: 46676269
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | errors: (none)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | pilot state: finished 
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | transexitcode: 0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | exeerrorcode: 0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | exeerrordiag: 
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | exitcode: 0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | exitmsg: OK
[2025-10-13 01:49:09] 2025-10-12 23:48:10,460 | INFO     | cpuconsumptiontime: 55556 s
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | nevents: 400
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | neventsw: 0
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | pid: 12279
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | pgrp: 12279
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | corecount: 8
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | event service: False
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | sizes: {0: 2347978, 1: 2348664, 2: 2348863, 12: 2348863, 23: 2348891, 34: 2348919, 45: 2349075, 55: 2349103, 66: 2349131, 77: 2349159, 88: 2349215, 90: 2349785, 98
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | --------------------------------------------------
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | 
[2025-10-13 01:49:09] 2025-10-12 23:48:10,461 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-10-13 01:49:09] 2025-10-12 23:48:10,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,496 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,496 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:49:09] 2025-10-12 23:48:10,496 | INFO     | job 6839590998 has completed (purged errors)
[2025-10-13 01:49:09] 2025-10-12 23:48:10,497 | INFO     | overall cleanup function is called
[2025-10-13 01:49:09] 2025-10-12 23:48:11,504 | INFO     | --- collectZombieJob: --- 10, [12279]
[2025-10-13 01:49:09] 2025-10-12 23:48:11,504 | INFO     | zombie collector waiting for pid 12279
[2025-10-13 01:49:09] 2025-10-12 23:48:11,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:49:09] 2025-10-12 23:48:11,505 | INFO     | collected zombie processes
[2025-10-13 01:49:09] 2025-10-12 23:48:11,505 | INFO     | will attempt to kill all subprocesses of pid=12279
[2025-10-13 01:49:09] 2025-10-12 23:48:11,611 | INFO     | process IDs to be killed: [12279] (in reverse order)
[2025-10-13 01:49:09] 2025-10-12 23:48:11,679 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:49:09] 2025-10-12 23:48:11,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:49:09] 2025-10-12 23:48:11,683 | INFO     | did not find any defunct processes belonging to 12279
[2025-10-13 01:49:09] 2025-10-12 23:48:11,686 | INFO     | did not find any defunct processes belonging to 12279
[2025-10-13 01:49:09] 2025-10-12 23:48:11,687 | INFO     | ready for new job
[2025-10-13 01:49:09] 2025-10-12 23:48:11,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:49:09] 2025-10-12 23:48:11,689 | INFO     | ***************************************
[2025-10-13 01:49:09] 2025-10-12 23:48:11,689 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:49:09] 2025-10-12 23:48:11,689 | INFO     | ***************************************
[2025-10-13 01:49:09] 2025-10-12 23:48:11,689 | INFO     | 
[2025-10-13 01:49:09] 2025-10-12 23:48:11,690 | INFO     | pilot is running in a VM
[2025-10-13 01:49:09] 2025-10-12 23:48:11,690 | INFO     | architecture information:
[2025-10-13 01:49:09] 2025-10-12 23:48:11,691 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:49:09] 2025-10-12 23:48:11,778 | INFO     | cat /etc/os-release:
[2025-10-13 01:49:09] NAME="CentOS Linux"
[2025-10-13 01:49:09] VERSION="7 (Core)"
[2025-10-13 01:49:09] ID="centos"
[2025-10-13 01:49:09] ID_LIKE="rhel fedora"
[2025-10-13 01:49:09] VERSION_ID="7"
[2025-10-13 01:49:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:49:09] ANSI_COLOR="0;31"
[2025-10-13 01:49:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:49:09] HOME_URL="https://www.centos.org/"
[2025-10-13 01:49:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:49:09] 
[2025-10-13 01:49:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:49:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:49:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:49:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:49:09] 
[2025-10-13 01:49:09] 2025-10-12 23:48:11,778 | INFO     | ***************************************
[2025-10-13 01:49:09] 2025-10-12 23:48:12,281 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-10-13 01:49:09] 2025-10-12 23:48:12,509 | INFO     | sufficient remaining disk space (495786655744 B)
[2025-10-13 01:49:09] 2025-10-12 23:48:12,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:49:09] 2025-10-12 23:48:12,509 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:49:09] 2025-10-12 23:48:12,510 | INFO     | update_server=False
[2025-10-13 01:49:09] 2025-10-12 23:48:12,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:49:09] 2025-10-12 23:48:12,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:49:09] 2025-10-12 23:48:12,891 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 01:49:09] 2025-10-12 23:48:12,892 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 01:49:09] 2025-10-12 23:48:12,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:49:09] 2025-10-12 23:48:12,892 | INFO     | will abort loop
[2025-10-13 01:49:09] 2025-10-12 23:48:13,201 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:49:09] 2025-10-12 23:48:13,251 | INFO     | all data control threads have been joined
[2025-10-13 01:49:09] 2025-10-12 23:48:13,515 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:13,547 | INFO     | all payload control threads have been joined
[2025-10-13 01:49:09] 2025-10-12 23:48:13,664 | INFO     | all job control threads have been joined
[2025-10-13 01:49:09] 2025-10-12 23:48:13,705 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:13,898 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,214 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,257 | INFO     | [data] control thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,316 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,367 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,514 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,535 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,553 | INFO     | [payload] control thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,670 | INFO     | [job] control thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,710 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:14,820 | INFO     | [job] validate thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:15,013 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:15,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:49:09] 2025-10-12 23:48:16,443 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:17,209 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:49:09] 2025-10-12 23:48:42,953 | INFO     | PID=5723 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 01:49:09] 2025-10-12 23:48:42,953 | INFO     | .. there are 9 such processes running
[2025-10-13 01:49:09] 2025-10-12 23:48:42,954 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:49:09] 2025-10-12 23:48:42,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:49:09] 2025-10-12 23:48:42,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:49:09] 2025-10-12 23:48:59,847 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:49:09] 2025-10-12 23:49:00,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139624688133952)>', '<ExcThread(monitor, started 139624378771200)>']
[2025-10-13 01:49:09] 2025-10-12 23:49:01,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:49:09] 2025-10-12 23:49:01,059 | INFO     | [monitor] control thread has ended
[2025-10-13 01:49:09] 2025-10-12 23:49:05,113 | INFO     | all workflow threads have been joined
[2025-10-13 01:49:09] 2025-10-12 23:49:05,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:49:09] 2025-10-12 23:49:05,114 | INFO     | traces error code: 0
[2025-10-13 01:49:09] 2025-10-12 23:49:05,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:49:09] 2025-10-12 23:49:05,454 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:49:09] 2025-10-12 23:49:05,589 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:49:09] 2025-10-12 23:49:05,605 [wrapper] pilotpid: 5723
[2025-10-13 01:49:09] 2025-10-12 23:49:05,671 [wrapper] Pilot exit status: 0
[2025-10-13 01:49:09] 2025-10-12 23:49:06,203 [wrapper] pandaids: 6839590998
[2025-10-13 01:49:09] 2025-10-12 23:49:07,052 [wrapper] cleanup supervisor_pilot 21884 5724
[2025-10-13 01:49:09] 2025-10-12 23:49:07,103 [wrapper] Test setup, not cleaning
[2025-10-13 01:49:09] 2025-10-12 23:49:07,146 [wrapper] apfmon messages muted
[2025-10-13 01:49:09] 2025-10-12 23:49:07,250 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:49:09] 2025-10-12 23:49:07,309 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:49:09]  *** Error codes and diagnostics ***
[2025-10-13 01:49:09]     "exeErrorCode": 0,
[2025-10-13 01:49:09]     "exeErrorDiag": "",
[2025-10-13 01:49:09]     "pilotErrorCode": 0,
[2025-10-13 01:49:09]     "pilotErrorDiag": "",
[2025-10-13 01:49:09]  *** Listing of results directory ***
[2025-10-13 01:49:09] total 412560
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc      5112 Oct 12 08:19 queuedata.json
[2025-10-13 01:49:09] -rwx------. 1 boinc boinc     36292 Oct 12 08:21 runpilot2-wrapper.sh
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc       100 Oct 12 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:49:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 21:31 run_atlas
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc       105 Oct 12 21:31 job.xml
[2025-10-13 01:49:09] -rw-r--r--. 2 boinc boinc 221415899 Oct 12 21:31 EVNT.46676267._004346.pool.root.1
[2025-10-13 01:49:09] -rw-r--r--. 2 boinc boinc     15120 Oct 12 21:31 start_atlas.sh
[2025-10-13 01:49:09] drwxrwx--x. 2 boinc boinc        68 Oct 12 21:31 shared
[2025-10-13 01:49:09] -rw-r--r--. 2 boinc boinc    569678 Oct 12 21:31 input.tar.gz
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc      6392 Oct 12 21:31 init_data.xml
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc         0 Oct 12 21:31 boinc_lockfile
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc      2549 Oct 12 21:32 pandaJob.out
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc    975536 Oct 12 21:36 agis_schedconf.cvmfs.json
[2025-10-13 01:49:09] drwx------. 5 boinc boinc      4096 Oct 12 21:36 pilot3
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc 192195741 Oct 13 01:47 HITS.46676269._072430.pool.root.1
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc       531 Oct 13 01:47 boinc_task_state.xml
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc      1018 Oct 13 01:47 memory_monitor_summary.json
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc   1560580 Oct 13 01:47 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc    465557 Oct 13 01:47 log.46676269._072430.job.log.tgz.1
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc      7779 Oct 13 01:48 heartbeat.json
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc        95 Oct 13 01:48 pilot_heartbeat.json
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc      8192 Oct 13 01:48 boinc_mmap_file
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc        28 Oct 13 01:48 wrapper_checkpoint.txt
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc      5070 Oct 13 01:49 pilotlog.txt
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc   2016585 Oct 13 01:49 log.46676269._072430.job.log.1
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc       357 Oct 13 01:49 output.list
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc       620 Oct 13 01:49 runtime_log
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc   2498560 Oct 13 01:49 result.tar.gz
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc      8717 Oct 13 01:49 runtime_log.err
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc       656 Oct 13 01:49 oCMKDmAd4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtoiNDm8mRLln.diag
[2025-10-13 01:49:09] -rw-r--r--. 1 boinc boinc     20773 Oct 13 01:49 stderr.txt
[2025-10-13 01:49:09] HITS file was successfully produced:
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc 192195741 Oct 13 01:47 shared/HITS.pool.root.1
[2025-10-13 01:49:09]  *** Contents of shared directory: ***
[2025-10-13 01:49:09] total 406936
[2025-10-13 01:49:09] -rw-r--r--. 2 boinc boinc 221415899 Oct 12 21:31 ATLAS.root_0
[2025-10-13 01:49:09] -rw-r--r--. 2 boinc boinc     15120 Oct 12 21:31 start_atlas.sh
[2025-10-13 01:49:09] -rw-r--r--. 2 boinc boinc    569678 Oct 12 21:31 input.tar.gz
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc 192195741 Oct 13 01:47 HITS.pool.root.1
[2025-10-13 01:49:09] -rw-------. 1 boinc boinc   2498560 Oct 13 01:49 result.tar.gz
01:49:11 (1919): run_atlas exited; CPU time 55765.149864
01:49:11 (1919): called boinc_finish(0)

</stderr_txt>
]]>

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