Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:41:53 (3170891): wrapper (7.7.26015): starting
21:41:53 (3170891): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 21:41:53] Arguments: --nthreads 3
[2025-10-12 21:41:53] Threads: 3
[2025-10-12 21:41:53] Checking for CVMFS
[2025-10-12 21:41:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:41:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:41:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:41:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:41:53] 2.9.2.0 1692675 4807 86964 151635 0 57 29493102 36864000 0 130560 0 3872793 99.991 164189 973 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:41:53] CVMFS is ok
[2025-10-12 21:41:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:41:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:41:53] Further information can be found at the LHC@home message board.
[2025-10-12 21:41:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:41:53] Checking for apptainer binary...
[2025-10-12 21:41:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:41:53] Running /usr/bin/apptainer --version
[2025-10-12 21:41:53] apptainer version 1.4.1-1.1
[2025-10-12 21:41:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:41:53] thA337a
[2025-10-12 21:41:53] apptainer works
[2025-10-12 21:41:53] Set ATHENA_PROC_NUMBER=3
[2025-10-12 21:41:53] Set ATHENA_CORE_NUMBER=3
[2025-10-12 21:41:53] Starting ATLAS job with PandaID=6839590619
[2025-10-12 21:41:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:05:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | job 6839590619 has completed (purged errors)
[2025-10-12 23:05:12] 2025-10-12 21:04:36,947 | INFO     | overall cleanup function is called
[2025-10-12 23:05:12] 2025-10-12 21:04:37,954 | INFO     | --- collectZombieJob: --- 10, [3181050]
[2025-10-12 23:05:12] 2025-10-12 21:04:37,954 | INFO     | zombie collector waiting for pid 3181050
[2025-10-12 23:05:12] 2025-10-12 21:04:37,954 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:05:12] 2025-10-12 21:04:37,954 | INFO     | collected zombie processes
[2025-10-12 23:05:12] 2025-10-12 21:04:37,954 | INFO     | will attempt to kill all subprocesses of pid=3181050
[2025-10-12 23:05:12] 2025-10-12 21:04:37,996 | INFO     | process IDs to be killed: [3181050] (in reverse order)
[2025-10-12 23:05:12] 2025-10-12 21:04:38,022 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:05:12] 2025-10-12 21:04:38,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:05:12] 2025-10-12 21:04:38,024 | INFO     | did not find any defunct processes belonging to 3181050
[2025-10-12 23:05:12] 2025-10-12 21:04:38,025 | INFO     | did not find any defunct processes belonging to 3181050
[2025-10-12 23:05:12] 2025-10-12 21:04:38,025 | INFO     | ready for new job
[2025-10-12 23:05:12] 2025-10-12 21:04:38,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:05:12] 2025-10-12 21:04:38,026 | INFO     | ***************************************
[2025-10-12 23:05:12] 2025-10-12 21:04:38,026 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:05:12] 2025-10-12 21:04:38,026 | INFO     | ***************************************
[2025-10-12 23:05:12] 2025-10-12 21:04:38,026 | INFO     | 
[2025-10-12 23:05:12] 2025-10-12 21:04:38,026 | INFO     | architecture information:
[2025-10-12 23:05:12] 2025-10-12 21:04:38,026 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:05:12] 2025-10-12 21:04:38,035 | INFO     | cat /etc/os-release:
[2025-10-12 23:05:12] NAME="CentOS Linux"
[2025-10-12 23:05:12] VERSION="7 (Core)"
[2025-10-12 23:05:12] ID="centos"
[2025-10-12 23:05:12] ID_LIKE="rhel fedora"
[2025-10-12 23:05:12] VERSION_ID="7"
[2025-10-12 23:05:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:05:12] ANSI_COLOR="0;31"
[2025-10-12 23:05:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:05:12] HOME_URL="https://www.centos.org/"
[2025-10-12 23:05:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:05:12] 
[2025-10-12 23:05:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:05:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:05:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:05:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:05:12] 
[2025-10-12 23:05:12] 2025-10-12 21:04:38,035 | INFO     | ***************************************
[2025-10-12 23:05:12] 2025-10-12 21:04:38,538 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | INFO     | sufficient remaining disk space (375404888064 B)
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | INFO     | update_server=False
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:05:12] 2025-10-12 21:04:38,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:05:12] 2025-10-12 21:04:38,825 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:05:12] 2025-10-12 21:04:38,826 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:05:12] 2025-10-12 21:04:38,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:05:12] 2025-10-12 21:04:38,826 | INFO     | will abort loop
[2025-10-12 23:05:12] 2025-10-12 21:04:39,017 | INFO     | all payload control threads have been joined
[2025-10-12 23:05:12] 2025-10-12 21:04:39,045 | INFO     | all data control threads have been joined
[2025-10-12 23:05:12] 2025-10-12 21:04:39,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:05:12] 2025-10-12 21:04:39,280 | INFO     | all job control threads have been joined
[2025-10-12 23:05:12] 2025-10-12 21:04:39,558 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:39,558 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:39,831 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,022 | INFO     | [payload] control thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,051 | INFO     | [data] control thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,100 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,286 | INFO     | [job] control thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,442 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,652 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,777 | INFO     | [job] validate thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:05:12] 2025-10-12 21:04:40,860 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,873 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:40,895 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:41,247 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:44,855 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:04:49,399 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:05:12] 2025-10-12 21:04:50,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:05:12] 2025-10-12 21:05:05,153 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:05:12] 2025-10-12 21:05:07,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563872495424)>', '<ExcThread(monitor, started 140563374388992)>']
[2025-10-12 23:05:12] 2025-10-12 21:05:07,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:05:12] 2025-10-12 21:05:07,703 | INFO     | [monitor] control thread has ended
[2025-10-12 23:05:12] 2025-10-12 21:05:12,261 | INFO     | all workflow threads have been joined
[2025-10-12 23:05:12] 2025-10-12 21:05:12,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:05:12] 2025-10-12 21:05:12,262 | INFO     | traces error code: 0
[2025-10-12 23:05:12] 2025-10-12 21:05:12,262 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:05:12] 2025-10-12 21:05:12,310 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:05:12] 2025-10-12 21:05:12,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:05:12] 2025-10-12 21:05:12,316 [wrapper] pilotpid: 3174606
[2025-10-12 23:05:12] 2025-10-12 21:05:12,318 [wrapper] Pilot exit status: 0
[2025-10-12 23:05:12] 2025-10-12 21:05:12,326 [wrapper] pandaids: 6839590619
[2025-10-12 23:05:12] 2025-10-12 21:05:12,343 [wrapper] cleanup supervisor_pilot 3192921 3174607
[2025-10-12 23:05:12] 2025-10-12 21:05:12,346 [wrapper] Test setup, not cleaning
[2025-10-12 23:05:12] 2025-10-12 21:05:12,348 [wrapper] apfmon messages muted
[2025-10-12 23:05:12] 2025-10-12 21:05:12,351 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:05:12] 2025-10-12 21:05:12,353 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:05:12]  *** Error codes and diagnostics ***
[2025-10-12 23:05:12]     "exeErrorCode": 0,
[2025-10-12 23:05:12]     "exeErrorDiag": "",
[2025-10-12 23:05:12]     "pilotErrorCode": 0,
[2025-10-12 23:05:12]     "pilotErrorDiag": "",
[2025-10-12 23:05:12]  *** Listing of results directory ***
[2025-10-12 23:05:12] total 418224
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc    557409 Oct 12 07:26 pilot3.tar.gz
[2025-10-12 23:05:12] -rwx------ 1 boinc boinc     36292 Oct 12 08:09 runpilot2-wrapper.sh
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:09 queuedata.json
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:05:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:41 run_atlas
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:41 job.xml
[2025-10-12 23:05:12] -rw-r--r-- 2 boinc boinc 221984788 Oct 12 21:41 EVNT.46676267._004330.pool.root.1
[2025-10-12 23:05:12] -rw-r--r-- 2 boinc boinc    569676 Oct 12 21:41 input.tar.gz
[2025-10-12 23:05:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:41 start_atlas.sh
[2025-10-12 23:05:12] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:41 shared
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:41 boinc_setup_complete
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc      6447 Oct 12 21:41 init_data.xml
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:41 boinc_lockfile
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc      2549 Oct 12 21:41 pandaJob.out
[2025-10-12 23:05:12] -rw------- 1 boinc boinc    975536 Oct 12 21:41 agis_schedconf.cvmfs.json
[2025-10-12 23:05:12] -rw------- 1 boinc boinc   1560580 Oct 12 21:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:05:12] drwx------ 5 boinc boinc      4096 Oct 12 21:41 pilot3
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:04 boinc_task_state.xml
[2025-10-12 23:05:12] -rw------- 1 boinc boinc 200396141 Oct 12 23:04 HITS.46676269._072188.pool.root.1
[2025-10-12 23:05:12] -rw------- 1 boinc boinc        95 Oct 12 23:04 pilot_heartbeat.json
[2025-10-12 23:05:12] -rw------- 1 boinc boinc      1017 Oct 12 23:04 memory_monitor_summary.json
[2025-10-12 23:05:12] -rw------- 1 boinc boinc    264697 Oct 12 23:04 log.46676269._072188.job.log.tgz.1
[2025-10-12 23:05:12] -rw------- 1 boinc boinc      7754 Oct 12 23:04 heartbeat.json
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:05 boinc_mmap_file
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:05 wrapper_checkpoint.txt
[2025-10-12 23:05:12] -rw------- 1 boinc boinc      4814 Oct 12 23:05 pilotlog.txt
[2025-10-12 23:05:12] -rw------- 1 boinc boinc    728132 Oct 12 23:05 log.46676269._072188.job.log.1
[2025-10-12 23:05:12] -rw------- 1 boinc boinc       357 Oct 12 23:05 output.list
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:05 runtime_log
[2025-10-12 23:05:12] -rw------- 1 boinc boinc   1013760 Oct 12 23:05 result.tar.gz
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc      8782 Oct 12 23:05 runtime_log.err
[2025-10-12 23:05:12] -rw------- 1 boinc boinc       659 Oct 12 23:05 boSNDm4R4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzJTMDmL1FBin.diag
[2025-10-12 23:05:12] -rw-r--r-- 1 boinc boinc     11562 Oct 12 23:05 stderr.txt
[2025-10-12 23:05:12] HITS file was successfully produced:
[2025-10-12 23:05:12] -rw------- 1 boinc boinc 200396141 Oct 12 23:04 shared/HITS.pool.root.1
[2025-10-12 23:05:12]  *** Contents of shared directory: ***
[2025-10-12 23:05:12] total 414060
[2025-10-12 23:05:12] -rw-r--r-- 2 boinc boinc 221984788 Oct 12 21:41 ATLAS.root_0
[2025-10-12 23:05:12] -rw-r--r-- 2 boinc boinc    569676 Oct 12 21:41 input.tar.gz
[2025-10-12 23:05:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:41 start_atlas.sh
[2025-10-12 23:05:12] -rw------- 1 boinc boinc 200396141 Oct 12 23:04 HITS.pool.root.1
[2025-10-12 23:05:12] -rw------- 1 boinc boinc   1013760 Oct 12 23:05 result.tar.gz
23:05:13 (3170891): run_atlas exited; CPU time 14212.261681
23:05:13 (3170891): called boinc_finish(0)

</stderr_txt>
]]>

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