Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:09:19 (3020327): wrapper (7.7.26015): starting
21:09:19 (3020327): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 21:09:19] Arguments: --nthreads 3
[2025-10-12 21:09:19] Threads: 3
[2025-10-12 21:09:19] Checking for CVMFS
[2025-10-12 21:09:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:09:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:09:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:09:19] 2.9.2.0 2131560 3120 67288 151633 3 57 18443750 36864000 0 130560 0 2324192 99.990 109287 941 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:09:19] CVMFS is ok
[2025-10-12 21:09:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:09:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:09:19] Further information can be found at the LHC@home message board.
[2025-10-12 21:09:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:09:19] Checking for apptainer binary...
[2025-10-12 21:09:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:09:19] Running /usr/bin/apptainer --version
[2025-10-12 21:09:19] apptainer version 1.4.1-1.1
[2025-10-12 21:09:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:09:19] atlasA228
[2025-10-12 21:09:19] apptainer works
[2025-10-12 21:09:19] Set ATHENA_PROC_NUMBER=3
[2025-10-12 21:09:19] Set ATHENA_CORE_NUMBER=3
[2025-10-12 21:09:19] Starting ATLAS job with PandaID=6839821291
[2025-10-12 21:09:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:40:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | job 6839821291 has completed (purged errors)
[2025-10-12 22:40:44] 2025-10-12 20:40:15,389 | INFO     | overall cleanup function is called
[2025-10-12 22:40:44] 2025-10-12 20:40:16,395 | INFO     | --- collectZombieJob: --- 10, [3030490]
[2025-10-12 22:40:44] 2025-10-12 20:40:16,396 | INFO     | zombie collector waiting for pid 3030490
[2025-10-12 22:40:44] 2025-10-12 20:40:16,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:40:44] 2025-10-12 20:40:16,396 | INFO     | collected zombie processes
[2025-10-12 22:40:44] 2025-10-12 20:40:16,396 | INFO     | will attempt to kill all subprocesses of pid=3030490
[2025-10-12 22:40:44] 2025-10-12 20:40:16,436 | INFO     | process IDs to be killed: [3030490] (in reverse order)
[2025-10-12 22:40:44] 2025-10-12 20:40:16,463 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:40:44] 2025-10-12 20:40:16,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:40:44] 2025-10-12 20:40:16,464 | INFO     | did not find any defunct processes belonging to 3030490
[2025-10-12 22:40:44] 2025-10-12 20:40:16,465 | INFO     | did not find any defunct processes belonging to 3030490
[2025-10-12 22:40:44] 2025-10-12 20:40:16,465 | INFO     | ready for new job
[2025-10-12 22:40:44] 2025-10-12 20:40:16,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:40:44] 2025-10-12 20:40:16,466 | INFO     | ***************************************
[2025-10-12 22:40:44] 2025-10-12 20:40:16,466 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:40:44] 2025-10-12 20:40:16,466 | INFO     | ***************************************
[2025-10-12 22:40:44] 2025-10-12 20:40:16,466 | INFO     | 
[2025-10-12 22:40:44] 2025-10-12 20:40:16,466 | INFO     | architecture information:
[2025-10-12 22:40:44] 2025-10-12 20:40:16,466 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:40:44] 2025-10-12 20:40:16,476 | INFO     | cat /etc/os-release:
[2025-10-12 22:40:44] NAME="CentOS Linux"
[2025-10-12 22:40:44] VERSION="7 (Core)"
[2025-10-12 22:40:44] ID="centos"
[2025-10-12 22:40:44] ID_LIKE="rhel fedora"
[2025-10-12 22:40:44] VERSION_ID="7"
[2025-10-12 22:40:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:40:44] ANSI_COLOR="0;31"
[2025-10-12 22:40:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:40:44] HOME_URL="https://www.centos.org/"
[2025-10-12 22:40:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:40:44] 
[2025-10-12 22:40:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:40:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:40:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:40:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:40:44] 
[2025-10-12 22:40:44] 2025-10-12 20:40:16,476 | INFO     | ***************************************
[2025-10-12 22:40:44] 2025-10-12 20:40:16,979 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:40:44] 2025-10-12 20:40:16,993 | INFO     | sufficient remaining disk space (342082191360 B)
[2025-10-12 22:40:44] 2025-10-12 20:40:16,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:40:44] 2025-10-12 20:40:16,993 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | INFO     | update_server=False
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:40:44] 2025-10-12 20:40:16,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:40:44] 2025-10-12 20:40:17,020 | INFO     | all payload control threads have been joined
[2025-10-12 22:40:44] 2025-10-12 20:40:17,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:40:44] 2025-10-12 20:40:17,382 | INFO     | aborting loop
[2025-10-12 22:40:44] 2025-10-12 20:40:17,394 | INFO     | all job control threads have been joined
[2025-10-12 22:40:44] 2025-10-12 20:40:17,775 | INFO     | all data control threads have been joined
[2025-10-12 22:40:44] 2025-10-12 20:40:17,998 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:17,999 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,026 | INFO     | [payload] control thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,223 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,389 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,400 | INFO     | [job] control thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,600 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,712 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,781 | INFO     | [data] control thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:18,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:40:44] 2025-10-12 20:40:19,000 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:19,217 | INFO     | [job] validate thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:19,236 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:19,343 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:19,410 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:22,961 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:27,856 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:40:44] 2025-10-12 20:40:28,862 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:40:44] 2025-10-12 20:40:38,368 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:40:44] 2025-10-12 20:40:39,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326535800640)>', '<ExcThread(monitor, started 140325305710336)>']
[2025-10-12 22:40:44] 2025-10-12 20:40:40,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:40:44] 2025-10-12 20:40:40,112 | INFO     | [monitor] control thread has ended
[2025-10-12 22:40:44] 2025-10-12 20:40:44,615 | INFO     | all workflow threads have been joined
[2025-10-12 22:40:44] 2025-10-12 20:40:44,615 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:40:44] 2025-10-12 20:40:44,616 | INFO     | traces error code: 0
[2025-10-12 22:40:44] 2025-10-12 20:40:44,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:40:44] 2025-10-12 20:40:44,664 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:40:44] 2025-10-12 20:40:44,667 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:40:44] 2025-10-12 20:40:44,671 [wrapper] pilotpid: 3024051
[2025-10-12 22:40:44] 2025-10-12 20:40:44,674 [wrapper] Pilot exit status: 0
[2025-10-12 22:40:44] 2025-10-12 20:40:44,682 [wrapper] pandaids: 6839821291
[2025-10-12 22:40:44] 2025-10-12 20:40:44,700 [wrapper] cleanup supervisor_pilot 3043128 3024052
[2025-10-12 22:40:44] 2025-10-12 20:40:44,703 [wrapper] Test setup, not cleaning
[2025-10-12 22:40:44] 2025-10-12 20:40:44,705 [wrapper] apfmon messages muted
[2025-10-12 22:40:44] 2025-10-12 20:40:44,708 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:40:44] 2025-10-12 20:40:44,710 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:40:44]  *** Error codes and diagnostics ***
[2025-10-12 22:40:44]     "exeErrorCode": 0,
[2025-10-12 22:40:44]     "exeErrorDiag": "",
[2025-10-12 22:40:44]     "pilotErrorCode": 0,
[2025-10-12 22:40:44]     "pilotErrorDiag": "",
[2025-10-12 22:40:44]  *** Listing of results directory ***
[2025-10-12 22:40:44] total 413264
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 10:52 pilot3.tar.gz
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 11:01 queuedata.json
[2025-10-12 22:40:44] -rwx------ 1 boinc boinc     36292 Oct 12 11:03 runpilot2-wrapper.sh
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:40:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:09 run_atlas
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:09 job.xml
[2025-10-12 22:40:44] -rw-r--r-- 2 boinc boinc 221554651 Oct 12 21:09 EVNT.46676267._003559.pool.root.1
[2025-10-12 22:40:44] -rw-r--r-- 2 boinc boinc    569681 Oct 12 21:09 input.tar.gz
[2025-10-12 22:40:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:09 start_atlas.sh
[2025-10-12 22:40:44] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:09 shared
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:09 boinc_setup_complete
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc      6199 Oct 12 21:09 init_data.xml
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:09 boinc_lockfile
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:09 pandaJob.out
[2025-10-12 22:40:44] -rw------- 1 boinc boinc    975528 Oct 12 21:09 agis_schedconf.cvmfs.json
[2025-10-12 22:40:44] -rw------- 1 boinc boinc   1560580 Oct 12 21:09 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:40:44] drwx------ 5 boinc boinc      4096 Oct 12 21:09 pilot3
[2025-10-12 22:40:44] -rw------- 1 boinc boinc 195606284 Oct 12 22:39 HITS.46676269._074979.pool.root.1
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:39 boinc_task_state.xml
[2025-10-12 22:40:44] -rw------- 1 boinc boinc        95 Oct 12 22:39 pilot_heartbeat.json
[2025-10-12 22:40:44] -rw------- 1 boinc boinc      1020 Oct 12 22:40 memory_monitor_summary.json
[2025-10-12 22:40:44] -rw------- 1 boinc boinc    268454 Oct 12 22:40 log.46676269._074979.job.log.tgz.1
[2025-10-12 22:40:44] -rw------- 1 boinc boinc      7765 Oct 12 22:40 heartbeat.json
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:40 boinc_mmap_file
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:40 wrapper_checkpoint.txt
[2025-10-12 22:40:44] -rw------- 1 boinc boinc      4628 Oct 12 22:40 pilotlog.txt
[2025-10-12 22:40:44] -rw------- 1 boinc boinc    792712 Oct 12 22:40 log.46676269._074979.job.log.1
[2025-10-12 22:40:44] -rw------- 1 boinc boinc       357 Oct 12 22:40 output.list
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:40 runtime_log
[2025-10-12 22:40:44] -rw------- 1 boinc boinc   1085440 Oct 12 22:40 result.tar.gz
[2025-10-12 22:40:44] -rw------- 1 boinc boinc       661 Oct 12 22:40 sZlNDmKA7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRHjNDmVTmmDn.diag
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc      8792 Oct 12 22:40 runtime_log.err
[2025-10-12 22:40:44] -rw-r--r-- 1 boinc boinc     12757 Oct 12 22:40 stderr.txt
[2025-10-12 22:40:44] HITS file was successfully produced:
[2025-10-12 22:40:44] -rw------- 1 boinc boinc 195606284 Oct 12 22:39 shared/HITS.pool.root.1
[2025-10-12 22:40:44]  *** Contents of shared directory: ***
[2025-10-12 22:40:44] total 409028
[2025-10-12 22:40:44] -rw-r--r-- 2 boinc boinc 221554651 Oct 12 21:09 ATLAS.root_0
[2025-10-12 22:40:44] -rw-r--r-- 2 boinc boinc    569681 Oct 12 21:09 input.tar.gz
[2025-10-12 22:40:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:09 start_atlas.sh
[2025-10-12 22:40:44] -rw------- 1 boinc boinc 195606284 Oct 12 22:39 HITS.pool.root.1
[2025-10-12 22:40:44] -rw------- 1 boinc boinc   1085440 Oct 12 22:40 result.tar.gz
22:40:46 (3020327): run_atlas exited; CPU time 15598.332783
22:40:46 (3020327): called boinc_finish(0)

</stderr_txt>
]]>

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