Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:53:38 (2649285): wrapper (7.7.26015): starting
06:53:38 (2649285): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 06:53:38] Arguments: --nthreads 8
[2025-10-12 06:53:38] Threads: 8
[2025-10-12 06:53:38] Checking for CVMFS
[2025-10-12 06:53:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:53:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:53:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:53:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:53:40] 2.13.2.0 2408171 129151 304200 151617 2 687 27338764 32935936 20707 16776704 0 189209728 99.602 207013551 30491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 06:53:40] CVMFS is ok
[2025-10-12 06:53:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:53:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:53:40] Further information can be found at the LHC@home message board.
[2025-10-12 06:53:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:53:40] Checking for apptainer binary...
[2025-10-12 06:53:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:53:40] Running /usr/bin/apptainer --version
[2025-10-12 06:53:40] apptainer version 1.4.3-1.el9
[2025-10-12 06:53:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:53:41] c6-5-7-3.aglt2.org
[2025-10-12 06:53:41] apptainer works
[2025-10-12 06:53:41] Set ATHENA_PROC_NUMBER=8
[2025-10-12 06:53:41] Set ATHENA_CORE_NUMBER=8
[2025-10-12 06:53:41] Starting ATLAS job with PandaID=6839163248
[2025-10-12 06:53:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:18:55]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:18:55] 2025-10-12 17:18:15,417 | INFO     | intersect: -19060358994.073498
[2025-10-12 13:18:55] 2025-10-12 17:18:15,418 | INFO     | chi2: 4.32676299933142
[2025-10-12 13:18:55] 2025-10-12 17:18:15,418 | INFO     | sum of square deviations: 15579537650.487658
[2025-10-12 13:18:55] 2025-10-12 17:18:15,457 | INFO     | sum of deviations: 171813745397.24402
[2025-10-12 13:18:55] 2025-10-12 17:18:15,494 | INFO     | mean x: 1760277892.097561
[2025-10-12 13:18:55] 2025-10-12 17:18:15,494 | INFO     | mean y: 2184413.8265582654
[2025-10-12 13:18:55] 2025-10-12 17:18:15,495 | INFO     | -- intersect: -19410454418.3522
[2025-10-12 13:18:55] 2025-10-12 17:18:15,495 | INFO     | intersect: -19410454418.3522
[2025-10-12 13:18:55] 2025-10-12 17:18:15,495 | INFO     | chi2: 4.325999905859567
[2025-10-12 13:18:55] 2025-10-12 17:18:15,496 | INFO     | current chi2=4.325999905859567 (change=0.017636590494336395 %)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,496 | INFO     | right removable region: 368
[2025-10-12 13:18:55] 2025-10-12 17:18:15,496 | INFO     | sum of square deviations: 15579582547.289993
[2025-10-12 13:18:55] 2025-10-12 17:18:15,537 | INFO     | sum of deviations: 76394331741.50139
[2025-10-12 13:18:55] 2025-10-12 17:18:15,538 | INFO     | mean x: 1760278197.100271
[2025-10-12 13:18:55] 2025-10-12 17:18:15,538 | INFO     | mean y: 2208880.9864498647
[2025-10-12 13:18:55] 2025-10-12 17:18:15,538 | INFO     | -- intersect: -8629298166.036547
[2025-10-12 13:18:55] 2025-10-12 17:18:15,538 | INFO     | intersect: -8629298166.036547
[2025-10-12 13:18:55] 2025-10-12 17:18:15,539 | INFO     | chi2: 0.9252448281587825
[2025-10-12 13:18:55] 2025-10-12 17:18:15,577 | INFO     | current chi2=0.9252448281587825 (change=78.6157728467736 %)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,578 | INFO     | sum of square deviations: 14954796757.238928
[2025-10-12 13:18:55] 2025-10-12 17:18:15,603 | INFO     | time since job start (23005s) is within the limit (172800.0s)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,604 | INFO     | sum of deviations: 29979693512.63459
[2025-10-12 13:18:55] 2025-10-12 17:18:15,604 | INFO     | mean x: 1760278349.6016483
[2025-10-12 13:18:55] 2025-10-12 17:18:15,604 | INFO     | mean y: 2220195.9423076925
[2025-10-12 13:18:55] 2025-10-12 17:18:15,604 | INFO     | -- intersect: -3526587736.0303473
[2025-10-12 13:18:55] 2025-10-12 17:18:15,605 | INFO     | intersect: -3526587736.0303473
[2025-10-12 13:18:55] 2025-10-12 17:18:15,605 | INFO     | chi2: 0.20956889558504244
[2025-10-12 13:18:55] 2025-10-12 17:18:15,605 | INFO     | current chi2=0.20956889558504244 (change=77.34989818834437 %)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,605 | INFO     | sum of square deviations: 14346941517.186605
[2025-10-12 13:18:55] 2025-10-12 17:18:15,643 | INFO     | sum of deviations: 10504022282.974928
[2025-10-12 13:18:55] 2025-10-12 17:18:15,643 | INFO     | mean x: 1760278502.103064
[2025-10-12 13:18:55] 2025-10-12 17:18:15,643 | INFO     | mean y: 2225071.5682451255
[2025-10-12 13:18:55] 2025-10-12 17:18:15,644 | INFO     | -- intersect: -1286551674.9029534
[2025-10-12 13:18:55] 2025-10-12 17:18:15,644 | INFO     | intersect: -1286551674.9029534
[2025-10-12 13:18:55] 2025-10-12 17:18:15,644 | INFO     | chi2: 0.07253074458752837
[2025-10-12 13:18:55] 2025-10-12 17:18:15,644 | INFO     | current chi2=0.07253074458752837 (change=65.39050111179519 %)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,645 | INFO     | sum of square deviations: 13755784264.63275
[2025-10-12 13:18:55] 2025-10-12 17:18:15,684 | INFO     | sum of deviations: 12315212582.259892
[2025-10-12 13:18:55] 2025-10-12 17:18:15,685 | INFO     | mean x: 1760278654.6045198
[2025-10-12 13:18:55] 2025-10-12 17:18:15,685 | INFO     | mean y: 2224604.5875706216
[2025-10-12 13:18:55] 2025-10-12 17:18:15,685 | INFO     | -- intersect: -1573709229.3854978
[2025-10-12 13:18:55] 2025-10-12 17:18:15,685 | INFO     | intersect: -1573709229.3854978
[2025-10-12 13:18:55] 2025-10-12 17:18:15,685 | INFO     | chi2: 0.06830144291685415
[2025-10-12 13:18:55] 2025-10-12 17:18:15,686 | INFO     | current chi2=0.06830144291685415 (change=5.831046812942056 %)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,686 | INFO     | left removable region: 40
[2025-10-12 13:18:55] 2025-10-12 17:18:15,686 | INFO     | sum of square deviations: 10942009657.070118
[2025-10-12 13:18:55] 2025-10-12 17:18:15,727 | INFO     | sum of deviations: 9298260739.594513
[2025-10-12 13:18:55] 2025-10-12 17:18:15,728 | INFO     | mean x: 1760279081.5945122
[2025-10-12 13:18:55] 2025-10-12 17:18:15,728 | INFO     | mean y: 2224510.9969512196
[2025-10-12 13:18:55] 2025-10-12 17:18:15,728 | INFO     | -- intersect: -1493618975.5369828
[2025-10-12 13:18:55] 2025-10-12 17:18:15,728 | INFO     | intersect: -1493618975.5369828
[2025-10-12 13:18:55] 2025-10-12 17:18:15,729 | INFO     | chi2: 0.06339338801045684
[2025-10-12 13:18:55] 2025-10-12 17:18:15,729 | INFO     | -- intersect: -1493618975.5369828
[2025-10-12 13:18:55] 2025-10-12 17:18:15,765 | INFO     | current memory leak: 0.85 B/s (using 328 data points, chi2=0.06)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,766 | INFO     | could have reported an average CPU frequency of 2712 MHz (16 samples)
[2025-10-12 13:18:55] 2025-10-12 17:18:15,766 | INFO     | ..............................
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . Timing measurements:
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . get job = 0 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . initial setup = 4 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . payload setup = 51 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . stage-in = 0 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . payload execution = 22833 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . stage-out = 5 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | . log creation = 0 s
[2025-10-12 13:18:55] 2025-10-12 17:18:15,767 | INFO     | ..............................
[2025-10-12 13:18:55] 2025-10-12 17:18:16,842 | INFO     | 
[2025-10-12 13:18:55] 2025-10-12 17:18:16,842 | INFO     | job summary report
[2025-10-12 13:18:55] 2025-10-12 17:18:16,842 | INFO     | --------------------------------------------------
[2025-10-12 13:18:55] 2025-10-12 17:18:16,842 | INFO     | PanDA job id: 6839163248
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | task id: 46676269
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | errors: (none)
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | pilot state: finished 
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | transexitcode: 0
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | exeerrorcode: 0
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | exeerrordiag: 
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | exitcode: 0
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | exitmsg: OK
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | cpuconsumptiontime: 44976 s
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | nevents: 400
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | neventsw: 0
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | pid: 2674995
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | pgrp: 2674995
[2025-10-12 13:18:55] 2025-10-12 17:18:16,843 | INFO     | corecount: 8
[2025-10-12 13:18:55] 2025-10-12 17:18:16,844 | INFO     | event service: False
[2025-10-12 13:18:55] 2025-10-12 17:18:16,844 | INFO     | sizes: {0: 2348028, 2: 2348713, 3: 2348741, 4: 2348912, 15: 2348940, 25: 2348968, 36: 2349124, 40: 2349414, 48: 2349442, 22889: 2383948, 22894: 2392946, 22895: 239
[2025-10-12 13:18:55] 2025-10-12 17:18:16,844 | INFO     | --------------------------------------------------
[2025-10-12 13:18:55] 2025-10-12 17:18:16,844 | INFO     | 
[2025-10-12 13:18:55] 2025-10-12 17:18:16,844 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 13:18:55] 2025-10-12 17:18:16,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | job 6839163248 has completed (purged errors)
[2025-10-12 13:18:55] 2025-10-12 17:18:16,921 | INFO     | overall cleanup function is called
[2025-10-12 13:18:55] 2025-10-12 17:18:17,930 | INFO     | --- collectZombieJob: --- 10, [2674995]
[2025-10-12 13:18:55] 2025-10-12 17:18:17,931 | INFO     | zombie collector waiting for pid 2674995
[2025-10-12 13:18:55] 2025-10-12 17:18:17,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:18:55] 2025-10-12 17:18:17,931 | INFO     | collected zombie processes
[2025-10-12 13:18:55] 2025-10-12 17:18:17,931 | INFO     | will attempt to kill all subprocesses of pid=2674995
[2025-10-12 13:18:55] 2025-10-12 17:18:18,695 | INFO     | process IDs to be killed: [2674995] (in reverse order)
[2025-10-12 13:18:55] 2025-10-12 17:18:19,652 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:18:55] 2025-10-12 17:18:19,652 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:18:55] 2025-10-12 17:18:19,776 | INFO     | did not find any defunct processes belonging to 2674995
[2025-10-12 13:18:55] 2025-10-12 17:18:19,925 | INFO     | did not find any defunct processes belonging to 2674995
[2025-10-12 13:18:55] 2025-10-12 17:18:19,926 | INFO     | ready for new job
[2025-10-12 13:18:55] 2025-10-12 17:18:19,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:18:55] 2025-10-12 17:18:19,956 | INFO     | ***************************************
[2025-10-12 13:18:55] 2025-10-12 17:18:19,956 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:18:55] 2025-10-12 17:18:19,956 | INFO     | ***************************************
[2025-10-12 13:18:55] 2025-10-12 17:18:19,956 | INFO     | 
[2025-10-12 13:18:55] 2025-10-12 17:18:19,983 | INFO     | architecture information:
[2025-10-12 13:18:55] 2025-10-12 17:18:20,010 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:18:55] 2025-10-12 17:18:20,194 | INFO     | cat /etc/os-release:
[2025-10-12 13:18:55] NAME="CentOS Linux"
[2025-10-12 13:18:55] VERSION="7 (Core)"
[2025-10-12 13:18:55] ID="centos"
[2025-10-12 13:18:55] ID_LIKE="rhel fedora"
[2025-10-12 13:18:55] VERSION_ID="7"
[2025-10-12 13:18:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:18:55] ANSI_COLOR="0;31"
[2025-10-12 13:18:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:18:55] HOME_URL="https://www.centos.org/"
[2025-10-12 13:18:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:18:55] 
[2025-10-12 13:18:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:18:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:18:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:18:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:18:55] 
[2025-10-12 13:18:55] 2025-10-12 17:18:20,195 | INFO     | ***************************************
[2025-10-12 13:18:55] 2025-10-12 17:18:20,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 13:18:55] 2025-10-12 17:18:20,871 | INFO     | sufficient remaining disk space (76042731520 B)
[2025-10-12 13:18:55] 2025-10-12 17:18:20,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:18:55] 2025-10-12 17:18:20,871 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:18:55] 2025-10-12 17:18:20,871 | INFO     | update_server=False
[2025-10-12 13:18:55] 2025-10-12 17:18:20,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:18:55] 2025-10-12 17:18:20,873 | INFO     | all job control threads have been joined
[2025-10-12 13:18:55] 2025-10-12 17:18:20,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:18:55] 2025-10-12 17:18:20,877 | INFO     | aborting loop
[2025-10-12 13:18:55] 2025-10-12 17:18:20,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:18:55] 2025-10-12 17:18:21,075 | INFO     | all payload control threads have been joined
[2025-10-12 13:18:55] 2025-10-12 17:18:21,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:18:55] 2025-10-12 17:18:21,783 | INFO     | all data control threads have been joined
[2025-10-12 13:18:55] 2025-10-12 17:18:21,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:18:55] 2025-10-12 17:18:21,877 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:21,879 | INFO     | [job] control thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:21,901 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,081 | INFO     | [payload] control thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,181 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,410 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,443 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,486 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,789 | INFO     | [data] control thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,878 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,884 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:22,985 | INFO     | [job] validate thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:23,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:23,406 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:23,412 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:25,592 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:18:55] 2025-10-12 17:18:32,790 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:18:55] 2025-10-12 17:18:34,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140267087251264)>', '<ExcThread(monitor, started 140266375735040)>']
[2025-10-12 13:18:55] 2025-10-12 17:18:39,598 | INFO     | all workflow threads have been joined
[2025-10-12 13:18:55] 2025-10-12 17:18:39,598 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:18:55] 2025-10-12 17:18:39,598 | INFO     | traces error code: 0
[2025-10-12 13:18:55] 2025-10-12 17:18:39,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:18:55] 2025-10-12 17:18:51,543 | INFO     | PID=2658119 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:18:55] 2025-10-12 17:18:51,544 | INFO     | .. there are 23 such processes running
[2025-10-12 13:18:55] 2025-10-12 17:18:51,544 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:18:55] 2025-10-12 17:18:51,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:18:55] 2025-10-12 17:18:51,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:18:55] 2025-10-12 17:18:51,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:18:55] 2025-10-12 17:18:51,545 | INFO     | [monitor] control thread has ended
[2025-10-12 13:18:55] 2025-10-12 17:18:52,783 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:18:55] 2025-10-12 17:18:52,831 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:18:55] 2025-10-12 17:18:52,875 [wrapper] pilotpid: 2658119
[2025-10-12 13:18:55] 2025-10-12 17:18:52,905 [wrapper] Pilot exit status: 0
[2025-10-12 13:18:55] 2025-10-12 17:18:53,090 [wrapper] pandaids: 6839163248
[2025-10-12 13:18:55] 2025-10-12 17:18:54,067 [wrapper] cleanup supervisor_pilot 3664493 2658120
[2025-10-12 13:18:55] 2025-10-12 17:18:54,110 [wrapper] Test setup, not cleaning
[2025-10-12 13:18:55] 2025-10-12 17:18:54,163 [wrapper] apfmon messages muted
[2025-10-12 13:18:55] 2025-10-12 17:18:54,177 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:18:55] 2025-10-12 17:18:54,210 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:18:55]  *** Error codes and diagnostics ***
[2025-10-12 13:18:55]     "exeErrorCode": 0,
[2025-10-12 13:18:55]     "exeErrorDiag": "",
[2025-10-12 13:18:55]     "pilotErrorCode": 0,
[2025-10-12 13:18:55]     "pilotErrorDiag": "",
[2025-10-12 13:18:55]  *** Listing of results directory ***
[2025-10-12 13:18:55] total 414140
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 20:05 pilot3.tar.gz
[2025-10-12 13:18:55] -rwx------. 1 boincer umatlas     36292 Oct 11 20:11 runpilot2-wrapper.sh
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 20:11 queuedata.json
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas       100 Oct 12 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:18:55] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 06:53 run_atlas
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas       105 Oct 12 06:53 job.xml
[2025-10-12 13:18:55] -rw-r--r--. 2 boincer umatlas 222984459 Oct 12 06:53 EVNT.46676267._002748.pool.root.1
[2025-10-12 13:18:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 06:53 start_atlas.sh
[2025-10-12 13:18:55] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 06:53 shared
[2025-10-12 13:18:55] -rw-r--r--. 2 boincer umatlas    569673 Oct 12 06:53 input.tar.gz
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas         0 Oct 12 06:53 boinc_lockfile
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 06:53 pandaJob.out
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas    975520 Oct 12 06:54 agis_schedconf.cvmfs.json
[2025-10-12 13:18:55] drwx------. 5 boincer umatlas      4096 Oct 12 06:54 pilot3
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas      6842 Oct 12 13:13 init_data.xml
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas 190397376 Oct 12 13:16 HITS.46676269._067412.pool.root.1
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas       530 Oct 12 13:17 boinc_task_state.xml
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas      1041 Oct 12 13:17 memory_monitor_summary.json
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas   1560580 Oct 12 13:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas    569924 Oct 12 13:17 log.46676269._067412.job.log.tgz.1
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas      7822 Oct 12 13:18 heartbeat.json
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas        95 Oct 12 13:18 pilot_heartbeat.json
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas       823 Oct 12 13:18 pilotlog.txt
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas   2828592 Oct 12 13:18 log.46676269._067412.job.log.1
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas       357 Oct 12 13:18 output.list
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:18 runtime_log
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas   3420160 Oct 12 13:18 result.tar.gz
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas      8704 Oct 12 13:18 runtime_log.err
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas       656 Oct 12 13:18 PwdKDmAryR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmapSMDmO49ssn.diag
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:18 boinc_mmap_file
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas        27 Oct 12 13:18 wrapper_checkpoint.txt
[2025-10-12 13:18:55] -rw-r--r--. 1 boincer umatlas     21076 Oct 12 13:18 stderr.txt
[2025-10-12 13:18:55] HITS file was successfully produced:
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas 190397376 Oct 12 13:16 shared/HITS.pool.root.1
[2025-10-12 13:18:55]  *** Contents of shared directory: ***
[2025-10-12 13:18:55] total 407616
[2025-10-12 13:18:55] -rw-r--r--. 2 boincer umatlas 222984459 Oct 12 06:53 ATLAS.root_0
[2025-10-12 13:18:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 06:53 start_atlas.sh
[2025-10-12 13:18:55] -rw-r--r--. 2 boincer umatlas    569673 Oct 12 06:53 input.tar.gz
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas 190397376 Oct 12 13:16 HITS.pool.root.1
[2025-10-12 13:18:55] -rw-------. 1 boincer umatlas   3420160 Oct 12 13:18 result.tar.gz
13:18:57 (2649285): run_atlas exited; CPU time 45693.806122
13:18:57 (2649285): called boinc_finish(0)

</stderr_txt>
]]>

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