Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:37:54 (1105983): wrapper (7.7.26015): starting
22:37:54 (1105983): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 22:37:54] Arguments: --nthreads 4
[2025-10-12 22:37:54] Threads: 4
[2025-10-12 22:37:54] Checking for CVMFS
[2025-10-12 22:37:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:37:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:37:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:37:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:37:54] 2.9.2.0 3100 3175 95584 151636 1 57 31101485 36864001 0 130560 0 2881041 99.992 112079 800 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 22:37:54] CVMFS is ok
[2025-10-12 22:37:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:37:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:37:54] Further information can be found at the LHC@home message board.
[2025-10-12 22:37:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:37:54] Checking for apptainer binary...
[2025-10-12 22:37:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:37:54] Running /usr/bin/apptainer --version
[2025-10-12 22:37:55] apptainer version 1.4.1-1.1
[2025-10-12 22:37:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:37:55] thA338
[2025-10-12 22:37:55] apptainer works
[2025-10-12 22:37:55] Set ATHENA_PROC_NUMBER=4
[2025-10-12 22:37:55] Set ATHENA_CORE_NUMBER=4
[2025-10-12 22:37:55] Starting ATLAS job with PandaID=6839774918
[2025-10-12 22:37:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:48:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:48:15] 2025-10-12 21:47:42,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:48:15] 2025-10-12 21:47:42,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:48:15] 2025-10-12 21:47:42,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:48:15] 2025-10-12 21:47:42,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:48:15] 2025-10-12 21:47:42,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:48:15] 2025-10-12 21:47:42,949 | INFO     | job 6839774918 has completed (purged errors)
[2025-10-12 23:48:15] 2025-10-12 21:47:42,950 | INFO     | overall cleanup function is called
[2025-10-12 23:48:15] 2025-10-12 21:47:43,956 | INFO     | --- collectZombieJob: --- 10, [1116319]
[2025-10-12 23:48:15] 2025-10-12 21:47:43,956 | INFO     | zombie collector waiting for pid 1116319
[2025-10-12 23:48:15] 2025-10-12 21:47:43,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:48:15] 2025-10-12 21:47:43,957 | INFO     | collected zombie processes
[2025-10-12 23:48:15] 2025-10-12 21:47:43,957 | INFO     | will attempt to kill all subprocesses of pid=1116319
[2025-10-12 23:48:15] 2025-10-12 21:47:44,000 | INFO     | process IDs to be killed: [1116319] (in reverse order)
[2025-10-12 23:48:15] 2025-10-12 21:47:44,031 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:48:15] 2025-10-12 21:47:44,031 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:48:15] 2025-10-12 21:47:44,033 | INFO     | did not find any defunct processes belonging to 1116319
[2025-10-12 23:48:15] 2025-10-12 21:47:44,034 | INFO     | did not find any defunct processes belonging to 1116319
[2025-10-12 23:48:15] 2025-10-12 21:47:44,034 | INFO     | ready for new job
[2025-10-12 23:48:15] 2025-10-12 21:47:44,034 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:48:15] 2025-10-12 21:47:44,035 | INFO     | ***************************************
[2025-10-12 23:48:15] 2025-10-12 21:47:44,035 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:48:15] 2025-10-12 21:47:44,035 | INFO     | ***************************************
[2025-10-12 23:48:15] 2025-10-12 21:47:44,035 | INFO     | 
[2025-10-12 23:48:15] 2025-10-12 21:47:44,036 | INFO     | architecture information:
[2025-10-12 23:48:15] 2025-10-12 21:47:44,036 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:48:15] 2025-10-12 21:47:44,049 | INFO     | cat /etc/os-release:
[2025-10-12 23:48:15] NAME="CentOS Linux"
[2025-10-12 23:48:15] VERSION="7 (Core)"
[2025-10-12 23:48:15] ID="centos"
[2025-10-12 23:48:15] ID_LIKE="rhel fedora"
[2025-10-12 23:48:15] VERSION_ID="7"
[2025-10-12 23:48:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:48:15] ANSI_COLOR="0;31"
[2025-10-12 23:48:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:48:15] HOME_URL="https://www.centos.org/"
[2025-10-12 23:48:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:48:15] 
[2025-10-12 23:48:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:48:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:48:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:48:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:48:15] 
[2025-10-12 23:48:15] 2025-10-12 21:47:44,049 | INFO     | ***************************************
[2025-10-12 23:48:15] 2025-10-12 21:47:44,553 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:48:15] 2025-10-12 21:47:44,570 | INFO     | sufficient remaining disk space (228134486016 B)
[2025-10-12 23:48:15] 2025-10-12 21:47:44,570 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:48:15] 2025-10-12 21:47:44,570 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:48:15] 2025-10-12 21:47:44,570 | INFO     | update_server=False
[2025-10-12 23:48:15] 2025-10-12 21:47:44,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:48:15] 2025-10-12 21:47:44,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:48:15] 2025-10-12 21:47:44,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:48:15] 2025-10-12 21:47:44,899 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:48:15] 2025-10-12 21:47:44,899 | INFO     | aborting loop
[2025-10-12 23:48:15] 2025-10-12 21:47:45,134 | INFO     | all data control threads have been joined
[2025-10-12 23:48:15] 2025-10-12 21:47:45,576 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:45,600 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:45,605 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:45,609 | INFO     | all payload control threads have been joined
[2025-10-12 23:48:15] 2025-10-12 21:47:45,841 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:45,905 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:46,140 | INFO     | [data] control thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:46,185 | INFO     | all job control threads have been joined
[2025-10-12 23:48:15] 2025-10-12 21:47:46,213 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:46,576 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:46,615 | INFO     | [payload] control thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:46,991 | INFO     | [job] validate thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:47,021 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:47,073 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:47,191 | INFO     | [job] control thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:47,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:48:15] 2025-10-12 21:47:48,570 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:48,804 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:47:55,241 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:48:15] 2025-10-12 21:47:56,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:48:15] 2025-10-12 21:48:07,391 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:48:15] 2025-10-12 21:48:08,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173071390528)>', '<ExcThread(monitor, started 140172314253056)>']
[2025-10-12 23:48:15] 2025-10-12 21:48:13,307 | INFO     | all workflow threads have been joined
[2025-10-12 23:48:15] 2025-10-12 21:48:13,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:48:15] 2025-10-12 21:48:13,308 | INFO     | traces error code: 0
[2025-10-12 23:48:15] 2025-10-12 21:48:13,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:48:15] 2025-10-12 21:48:15,512 | INFO     | PID=1109758 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:48:15] 2025-10-12 21:48:15,512 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:48:15] 2025-10-12 21:48:15,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:48:15] 2025-10-12 21:48:15,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:48:15] 2025-10-12 21:48:15,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:48:15] 2025-10-12 21:48:15,512 | INFO     | [monitor] control thread has ended
[2025-10-12 23:48:15] 2025-10-12 21:48:15,587 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:48:15] 2025-10-12 21:48:15,590 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:48:15] 2025-10-12 21:48:15,594 [wrapper] pilotpid: 1109758
[2025-10-12 23:48:15] 2025-10-12 21:48:15,598 [wrapper] Pilot exit status: 0
[2025-10-12 23:48:15] 2025-10-12 21:48:15,610 [wrapper] pandaids: 6839774918
[2025-10-12 23:48:15] 2025-10-12 21:48:15,630 [wrapper] cleanup supervisor_pilot 1126195 1109759
[2025-10-12 23:48:15] 2025-10-12 21:48:15,634 [wrapper] Test setup, not cleaning
[2025-10-12 23:48:15] 2025-10-12 21:48:15,637 [wrapper] apfmon messages muted
[2025-10-12 23:48:15] 2025-10-12 21:48:15,641 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:48:15] 2025-10-12 21:48:15,644 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:48:15]  *** Error codes and diagnostics ***
[2025-10-12 23:48:15]     "exeErrorCode": 0,
[2025-10-12 23:48:15]     "exeErrorDiag": "",
[2025-10-12 23:48:15]     "pilotErrorCode": 0,
[2025-10-12 23:48:15]     "pilotErrorDiag": "",
[2025-10-12 23:48:15]  *** Listing of results directory ***
[2025-10-12 23:48:15] total 413664
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc    557409 Oct 12 10:37 pilot3.tar.gz
[2025-10-12 23:48:15] -rwx------ 1 boinc boinc     36292 Oct 12 10:43 runpilot2-wrapper.sh
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:43 queuedata.json
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:48:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:37 run_atlas
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:37 job.xml
[2025-10-12 23:48:15] -rw-r--r-- 2 boinc boinc 225221455 Oct 12 22:37 EVNT.46676267._003548.pool.root.1
[2025-10-12 23:48:15] -rw-r--r-- 2 boinc boinc    569675 Oct 12 22:37 input.tar.gz
[2025-10-12 23:48:15] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:37 start_atlas.sh
[2025-10-12 23:48:15] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:37 shared
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:37 boinc_setup_complete
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc      6375 Oct 12 22:37 init_data.xml
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:37 boinc_lockfile
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:37 pandaJob.out
[2025-10-12 23:48:15] -rw------- 1 boinc boinc    975536 Oct 12 22:38 agis_schedconf.cvmfs.json
[2025-10-12 23:48:15] -rw------- 1 boinc boinc   1560580 Oct 12 22:38 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:48:15] drwx------ 5 boinc boinc      4096 Oct 12 22:38 pilot3
[2025-10-12 23:48:15] -rw------- 1 boinc boinc 192715061 Oct 12 23:47 HITS.46676269._074664.pool.root.1
[2025-10-12 23:48:15] -rw------- 1 boinc boinc        95 Oct 12 23:47 pilot_heartbeat.json
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:47 boinc_task_state.xml
[2025-10-12 23:48:15] -rw------- 1 boinc boinc      1023 Oct 12 23:47 memory_monitor_summary.json
[2025-10-12 23:48:15] -rw------- 1 boinc boinc    263044 Oct 12 23:47 log.46676269._074664.job.log.tgz.1
[2025-10-12 23:48:15] -rw------- 1 boinc boinc      7770 Oct 12 23:47 heartbeat.json
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:47 boinc_mmap_file
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:47 wrapper_checkpoint.txt
[2025-10-12 23:48:15] -rw------- 1 boinc boinc       747 Oct 12 23:48 pilotlog.txt
[2025-10-12 23:48:15] -rw------- 1 boinc boinc    622042 Oct 12 23:48 log.46676269._074664.job.log.1
[2025-10-12 23:48:15] -rw------- 1 boinc boinc       357 Oct 12 23:48 output.list
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:48 runtime_log
[2025-10-12 23:48:15] -rw------- 1 boinc boinc    901120 Oct 12 23:48 result.tar.gz
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc      8777 Oct 12 23:48 runtime_log.err
[2025-10-12 23:48:15] -rw------- 1 boinc boinc       658 Oct 12 23:48 ng6LDmwq6R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmaWTMDmM7i0So.diag
[2025-10-12 23:48:15] -rw-r--r-- 1 boinc boinc     11406 Oct 12 23:48 stderr.txt
[2025-10-12 23:48:15] HITS file was successfully produced:
[2025-10-12 23:48:15] -rw------- 1 boinc boinc 192715061 Oct 12 23:47 shared/HITS.pool.root.1
[2025-10-12 23:48:15]  *** Contents of shared directory: ***
[2025-10-12 23:48:15] total 409608
[2025-10-12 23:48:15] -rw-r--r-- 2 boinc boinc 225221455 Oct 12 22:37 ATLAS.root_0
[2025-10-12 23:48:15] -rw-r--r-- 2 boinc boinc    569675 Oct 12 22:37 input.tar.gz
[2025-10-12 23:48:15] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:37 start_atlas.sh
[2025-10-12 23:48:15] -rw------- 1 boinc boinc 192715061 Oct 12 23:47 HITS.pool.root.1
[2025-10-12 23:48:15] -rw------- 1 boinc boinc    901120 Oct 12 23:48 result.tar.gz
23:48:17 (1105983): run_atlas exited; CPU time 15768.278024
23:48:17 (1105983): called boinc_finish(0)

</stderr_txt>
]]>

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