Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:24:28 (3217015): wrapper (7.7.26015): starting
21:24:28 (3217015): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 21:24:28] Arguments: --nthreads 3
[2025-10-12 21:24:28] Threads: 3
[2025-10-12 21:24:28] Checking for CVMFS
[2025-10-12 21:24:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:24:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:24:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:24:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:24:28] 2.9.2.0 2127501 3498 80596 151634 0 56 29029306 36864001 0 130560 0 2862444 99.987 246806 1487 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:24:28] CVMFS is ok
[2025-10-12 21:24:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:24:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:24:28] Further information can be found at the LHC@home message board.
[2025-10-12 21:24:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:24:28] Checking for apptainer binary...
[2025-10-12 21:24:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:24:28] Running /usr/bin/apptainer --version
[2025-10-12 21:24:28] apptainer version 1.4.1-1.1
[2025-10-12 21:24:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:24:28] thA385
[2025-10-12 21:24:28] apptainer works
[2025-10-12 21:24:28] Set ATHENA_PROC_NUMBER=3
[2025-10-12 21:24:28] Set ATHENA_CORE_NUMBER=3
[2025-10-12 21:24:28] Starting ATLAS job with PandaID=6839588960
[2025-10-12 21:24:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:43:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | job 6839588960 has completed (purged errors)
[2025-10-12 22:43:47] 2025-10-12 20:43:12,249 | INFO     | overall cleanup function is called
[2025-10-12 22:43:47] 2025-10-12 20:43:13,256 | INFO     | --- collectZombieJob: --- 10, [3227175]
[2025-10-12 22:43:47] 2025-10-12 20:43:13,256 | INFO     | zombie collector waiting for pid 3227175
[2025-10-12 22:43:47] 2025-10-12 20:43:13,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:43:47] 2025-10-12 20:43:13,257 | INFO     | collected zombie processes
[2025-10-12 22:43:47] 2025-10-12 20:43:13,257 | INFO     | will attempt to kill all subprocesses of pid=3227175
[2025-10-12 22:43:47] 2025-10-12 20:43:13,299 | INFO     | process IDs to be killed: [3227175] (in reverse order)
[2025-10-12 22:43:47] 2025-10-12 20:43:13,324 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:43:47] 2025-10-12 20:43:13,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:43:47] 2025-10-12 20:43:13,325 | INFO     | did not find any defunct processes belonging to 3227175
[2025-10-12 22:43:47] 2025-10-12 20:43:13,326 | INFO     | did not find any defunct processes belonging to 3227175
[2025-10-12 22:43:47] 2025-10-12 20:43:13,326 | INFO     | ready for new job
[2025-10-12 22:43:47] 2025-10-12 20:43:13,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:43:47] 2025-10-12 20:43:13,327 | INFO     | ***************************************
[2025-10-12 22:43:47] 2025-10-12 20:43:13,327 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:43:47] 2025-10-12 20:43:13,327 | INFO     | ***************************************
[2025-10-12 22:43:47] 2025-10-12 20:43:13,327 | INFO     | 
[2025-10-12 22:43:47] 2025-10-12 20:43:13,328 | INFO     | architecture information:
[2025-10-12 22:43:47] 2025-10-12 20:43:13,328 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:43:47] 2025-10-12 20:43:13,336 | INFO     | cat /etc/os-release:
[2025-10-12 22:43:47] NAME="CentOS Linux"
[2025-10-12 22:43:47] VERSION="7 (Core)"
[2025-10-12 22:43:47] ID="centos"
[2025-10-12 22:43:47] ID_LIKE="rhel fedora"
[2025-10-12 22:43:47] VERSION_ID="7"
[2025-10-12 22:43:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:43:47] ANSI_COLOR="0;31"
[2025-10-12 22:43:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:43:47] HOME_URL="https://www.centos.org/"
[2025-10-12 22:43:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:43:47] 
[2025-10-12 22:43:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:43:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:43:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:43:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:43:47] 
[2025-10-12 22:43:47] 2025-10-12 20:43:13,337 | INFO     | ***************************************
[2025-10-12 22:43:47] 2025-10-12 20:43:13,840 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:43:47] 2025-10-12 20:43:13,852 | INFO     | sufficient remaining disk space (375888281600 B)
[2025-10-12 22:43:47] 2025-10-12 20:43:13,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:43:47] 2025-10-12 20:43:13,852 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:43:47] 2025-10-12 20:43:13,852 | INFO     | update_server=False
[2025-10-12 22:43:47] 2025-10-12 20:43:13,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:43:47] 2025-10-12 20:43:13,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:43:47] 2025-10-12 20:43:13,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:43:47] 2025-10-12 20:43:13,853 | INFO     | aborting loop
[2025-10-12 22:43:47] 2025-10-12 20:43:13,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:43:47] 2025-10-12 20:43:14,003 | INFO     | all payload control threads have been joined
[2025-10-12 22:43:47] 2025-10-12 20:43:14,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:43:47] 2025-10-12 20:43:14,534 | INFO     | all data control threads have been joined
[2025-10-12 22:43:47] 2025-10-12 20:43:14,736 | INFO     | all job control threads have been joined
[2025-10-12 22:43:47] 2025-10-12 20:43:14,858 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:14,859 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:14,859 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,008 | INFO     | [payload] control thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,013 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,141 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,146 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,367 | INFO     | [job] validate thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,524 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,539 | INFO     | [data] control thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:15,742 | INFO     | [job] control thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:16,010 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:16,046 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:16,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:16,153 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:17,859 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:43:47] 2025-10-12 20:43:40,720 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:43:47] 2025-10-12 20:43:42,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352511133504)>', '<ExcThread(monitor, started 140351880820480)>']
[2025-10-12 22:43:47] 2025-10-12 20:43:43,772 | INFO     | PID=3220736 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:43:47] 2025-10-12 20:43:43,772 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:43:47] 2025-10-12 20:43:43,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:43:47] 2025-10-12 20:43:43,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:43:47] 2025-10-12 20:43:43,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:43:47] 2025-10-12 20:43:43,773 | INFO     | [monitor] control thread has ended
[2025-10-12 22:43:47] 2025-10-12 20:43:47,082 | INFO     | all workflow threads have been joined
[2025-10-12 22:43:47] 2025-10-12 20:43:47,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:43:47] 2025-10-12 20:43:47,083 | INFO     | traces error code: 0
[2025-10-12 22:43:47] 2025-10-12 20:43:47,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:43:47] 2025-10-12 20:43:47,133 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:43:47] 2025-10-12 20:43:47,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:43:47] 2025-10-12 20:43:47,138 [wrapper] pilotpid: 3220736
[2025-10-12 22:43:47] 2025-10-12 20:43:47,140 [wrapper] Pilot exit status: 0
[2025-10-12 22:43:47] 2025-10-12 20:43:47,148 [wrapper] pandaids: 6839588960
[2025-10-12 22:43:47] 2025-10-12 20:43:47,165 [wrapper] cleanup supervisor_pilot 3238907 3220737
[2025-10-12 22:43:47] 2025-10-12 20:43:47,168 [wrapper] Test setup, not cleaning
[2025-10-12 22:43:47] 2025-10-12 20:43:47,170 [wrapper] apfmon messages muted
[2025-10-12 22:43:47] 2025-10-12 20:43:47,173 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:43:47] 2025-10-12 20:43:47,175 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:43:47]  *** Error codes and diagnostics ***
[2025-10-12 22:43:47]     "exeErrorCode": 0,
[2025-10-12 22:43:47]     "exeErrorDiag": "",
[2025-10-12 22:43:47]     "pilotErrorCode": 0,
[2025-10-12 22:43:47]     "pilotErrorDiag": "",
[2025-10-12 22:43:47]  *** Listing of results directory ***
[2025-10-12 22:43:47] total 401524
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc    557409 Oct 12 07:26 pilot3.tar.gz
[2025-10-12 22:43:47] -rwx------ 1 boinc boinc     36292 Oct 12 08:03 runpilot2-wrapper.sh
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:03 queuedata.json
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:43:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:24 run_atlas
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:24 job.xml
[2025-10-12 22:43:47] -rw-r--r-- 2 boinc boinc 218514428 Oct 12 21:24 EVNT.46676267._004329.pool.root.1
[2025-10-12 22:43:47] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:24 shared
[2025-10-12 22:43:47] -rw-r--r-- 2 boinc boinc    569674 Oct 12 21:24 input.tar.gz
[2025-10-12 22:43:47] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:24 start_atlas.sh
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:24 boinc_setup_complete
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc      6446 Oct 12 21:24 init_data.xml
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:24 boinc_lockfile
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc      2549 Oct 12 21:24 pandaJob.out
[2025-10-12 22:43:47] -rw------- 1 boinc boinc    975528 Oct 12 21:24 agis_schedconf.cvmfs.json
[2025-10-12 22:43:47] -rw------- 1 boinc boinc   1560580 Oct 12 21:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:43:47] drwx------ 5 boinc boinc      4096 Oct 12 21:24 pilot3
[2025-10-12 22:43:47] -rw------- 1 boinc boinc 186864233 Oct 12 22:42 HITS.46676269._072152.pool.root.1
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:42 boinc_task_state.xml
[2025-10-12 22:43:47] -rw------- 1 boinc boinc        95 Oct 12 22:42 pilot_heartbeat.json
[2025-10-12 22:43:47] -rw------- 1 boinc boinc      1020 Oct 12 22:43 memory_monitor_summary.json
[2025-10-12 22:43:47] -rw------- 1 boinc boinc    248922 Oct 12 22:43 log.46676269._072152.job.log.tgz.1
[2025-10-12 22:43:47] -rw------- 1 boinc boinc      7753 Oct 12 22:43 heartbeat.json
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:43 boinc_mmap_file
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:43 wrapper_checkpoint.txt
[2025-10-12 22:43:47] -rw------- 1 boinc boinc      4752 Oct 12 22:43 pilotlog.txt
[2025-10-12 22:43:47] -rw------- 1 boinc boinc    695321 Oct 12 22:43 log.46676269._072152.job.log.1
[2025-10-12 22:43:47] -rw------- 1 boinc boinc       357 Oct 12 22:43 output.list
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:43 runtime_log
[2025-10-12 22:43:47] -rw------- 1 boinc boinc    962560 Oct 12 22:43 result.tar.gz
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc      8777 Oct 12 22:43 runtime_log.err
[2025-10-12 22:43:47] -rw------- 1 boinc boinc       658 Oct 12 22:43 MKiMDm2L4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXmiNDmiCEiEm.diag
[2025-10-12 22:43:47] -rw-r--r-- 1 boinc boinc     11934 Oct 12 22:43 stderr.txt
[2025-10-12 22:43:47] HITS file was successfully produced:
[2025-10-12 22:43:47] -rw------- 1 boinc boinc 186864233 Oct 12 22:42 shared/HITS.pool.root.1
[2025-10-12 22:43:47]  *** Contents of shared directory: ***
[2025-10-12 22:43:47] total 397408
[2025-10-12 22:43:47] -rw-r--r-- 2 boinc boinc 218514428 Oct 12 21:24 ATLAS.root_0
[2025-10-12 22:43:47] -rw-r--r-- 2 boinc boinc    569674 Oct 12 21:24 input.tar.gz
[2025-10-12 22:43:47] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:24 start_atlas.sh
[2025-10-12 22:43:47] -rw------- 1 boinc boinc 186864233 Oct 12 22:42 HITS.pool.root.1
[2025-10-12 22:43:47] -rw------- 1 boinc boinc    962560 Oct 12 22:43 result.tar.gz
22:43:49 (3217015): run_atlas exited; CPU time 13494.218756
22:43:49 (3217015): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN