Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
08:41:46 (2120254): wrapper (7.7.26015): starting
08:41:46 (2120254): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 08:41:46] Arguments: --nthreads 4
[2025-10-12 08:41:46] Threads: 4
[2025-10-12 08:41:46] Checking for CVMFS
[2025-10-12 08:41:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 08:41:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 08:41:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 08:41:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 08:41:46] 2.11.5.0 2691367 4409 109592 151620 3 188 3108534 4096000 5867 130560 0 21779811 99.998 152451 2992 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 08:41:46] CVMFS is ok
[2025-10-12 08:41:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 08:41:46] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 08:41:46] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 08:41:46] Further information can be found at the LHC@home message board.
[2025-10-12 08:41:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 08:41:46] Checking for apptainer binary...
[2025-10-12 08:41:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 08:41:46] Running /usr/bin/apptainer --version
[2025-10-12 08:41:46] apptainer version 1.4.3
[2025-10-12 08:41:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 08:41:46] x32-linux3
[2025-10-12 08:41:46] apptainer works
[2025-10-12 08:41:46] Set ATHENA_PROC_NUMBER=4
[2025-10-12 08:41:46] Set ATHENA_CORE_NUMBER=4
[2025-10-12 08:41:46] Starting ATLAS job with PandaID=6839588877
[2025-10-12 08:41:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:41:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:41:11] 2025-10-12 14:40:25,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:41:11] 2025-10-12 14:40:25,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:41:11] 2025-10-12 14:40:25,463 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:41:11] 2025-10-12 14:40:25,463 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,463 | INFO     | sum of deviations: -836499283.0000105
[2025-10-12 10:41:11] 2025-10-12 14:40:25,463 | INFO     | mean x: 1760276473.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,463 | INFO     | mean y: 2286222.2905982905
[2025-10-12 10:41:11] 2025-10-12 14:40:25,464 | INFO     | -- intersect: 2967405546.7131677
[2025-10-12 10:41:11] 2025-10-12 14:40:25,464 | INFO     | intersect: 2967405546.7131677
[2025-10-12 10:41:11] 2025-10-12 14:40:25,464 | INFO     | chi2: 1.9063788752004172
[2025-10-12 10:41:11] 2025-10-12 14:40:25,464 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,464 | INFO     | sum of deviations: 6273895506.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,464 | INFO     | mean x: 1760276320.5
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | mean y: 2303381.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | -- intersect: -25350165539.901806
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | intersect: -25350165539.901806
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | chi2: 1.116609023482705
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | current chi2=1.116609023482705 (change=41.427748806473936 %)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | sum of deviations: 6061224251.999999
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | mean x: 1760276168.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,465 | INFO     | mean y: 2302798.878504673
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | -- intersect: -28087541959.63624
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | intersect: -28087541959.63624
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | chi2: 1.1184151642616365
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | current chi2=1.1184151642616365 (change=-0.161752300129012 %)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | right removable region: 106
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | sum of deviations: -11165601040.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,466 | INFO     | mean x: 1760276625.5
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | mean y: 2311265.8928571427
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | -- intersect: 45121902774.402596
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | intersect: 45121902774.402596
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | chi2: 0.8287907905857166
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | current chi2=0.8287907905857166 (change=56.5253895032494 %)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | sum of deviations: -10357598700.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,467 | INFO     | mean x: 1760276778.0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | mean y: 2309048.542056075
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | -- intersect: 48003080556.12796
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | intersect: 48003080556.12796
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | chi2: 0.8298266868475045
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | current chi2=0.8298266868475045 (change=-0.12498887216830978 %)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | left removable region: 20
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | sum of square deviations: 197203697.5
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | sum of deviations: -1859571519.0000002
[2025-10-12 10:41:11] 2025-10-12 14:40:25,468 | INFO     | mean x: 1760276747.5
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | mean y: 2324432.7209302327
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | -- intersect: 16601204406.606588
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | intersect: 16601204406.606588
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | chi2: 0.007461177175215904
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | -- intersect: 16601204406.606588
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | current memory leak: -9.43 B/s (using 86 data points, chi2=0.01)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | could have reported an average CPU frequency of 3817 MHz (7 samples)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | ..............................
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | . Timing measurements:
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | . get job = 0 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | . initial setup = 2 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,469 | INFO     | . payload setup = 3 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,470 | INFO     | . stage-in = 0 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,470 | INFO     | . payload execution = 7085 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,470 | INFO     | . stage-out = 0 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,470 | INFO     | . log creation = 0 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,470 | INFO     | ..............................
[2025-10-12 10:41:11] 2025-10-12 14:40:25,534 | INFO     | 
[2025-10-12 10:41:11] 2025-10-12 14:40:25,534 | INFO     | job summary report
[2025-10-12 10:41:11] 2025-10-12 14:40:25,534 | INFO     | --------------------------------------------------
[2025-10-12 10:41:11] 2025-10-12 14:40:25,534 | INFO     | PanDA job id: 6839588877
[2025-10-12 10:41:11] 2025-10-12 14:40:25,534 | INFO     | task id: 46676269
[2025-10-12 10:41:11] 2025-10-12 14:40:25,534 | INFO     | errors: (none)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | pilot state: finished 
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | transexitcode: 0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | exeerrorcode: 0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | exeerrordiag: 
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | exitcode: 0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | exitmsg: OK
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | cpuconsumptiontime: 27472 s
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | nevents: 400
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | neventsw: 0
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | pid: 2130809
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | pgrp: 2130809
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | corecount: 4
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | event service: False
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | sizes: {0: 2348862, 3: 2349124, 11: 2349152, 7092: 2385528, 7097: 2385666}
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | --------------------------------------------------
[2025-10-12 10:41:11] 2025-10-12 14:40:25,535 | INFO     | 
[2025-10-12 10:41:11] 2025-10-12 14:40:25,536 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-10-12 10:41:11] 2025-10-12 14:40:25,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:41:11] 2025-10-12 14:40:25,554 | INFO     | job 6839588877 has completed (purged errors)
[2025-10-12 10:41:11] 2025-10-12 14:40:25,554 | INFO     | overall cleanup function is called
[2025-10-12 10:41:11] 2025-10-12 14:40:26,560 | INFO     | --- collectZombieJob: --- 10, [2130809]
[2025-10-12 10:41:11] 2025-10-12 14:40:26,560 | INFO     | zombie collector waiting for pid 2130809
[2025-10-12 10:41:11] 2025-10-12 14:40:26,560 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:41:11] 2025-10-12 14:40:26,560 | INFO     | collected zombie processes
[2025-10-12 10:41:11] 2025-10-12 14:40:26,560 | INFO     | will attempt to kill all subprocesses of pid=2130809
[2025-10-12 10:41:11] 2025-10-12 14:40:26,702 | INFO     | process IDs to be killed: [2130809] (in reverse order)
[2025-10-12 10:41:11] 2025-10-12 14:40:26,759 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:41:11] 2025-10-12 14:40:26,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:41:11] 2025-10-12 14:40:26,764 | INFO     | did not find any defunct processes belonging to 2130809
[2025-10-12 10:41:11] 2025-10-12 14:40:26,768 | INFO     | did not find any defunct processes belonging to 2130809
[2025-10-12 10:41:11] 2025-10-12 14:40:26,768 | INFO     | ready for new job
[2025-10-12 10:41:11] 2025-10-12 14:40:26,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:41:11] 2025-10-12 14:40:26,770 | INFO     | ***************************************
[2025-10-12 10:41:11] 2025-10-12 14:40:26,770 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:41:11] 2025-10-12 14:40:26,770 | INFO     | ***************************************
[2025-10-12 10:41:11] 2025-10-12 14:40:26,770 | INFO     | 
[2025-10-12 10:41:11] 2025-10-12 14:40:26,790 | INFO     | architecture information:
[2025-10-12 10:41:11] 2025-10-12 14:40:26,790 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:41:11] 2025-10-12 14:40:26,803 | INFO     | cat /etc/os-release:
[2025-10-12 10:41:11] NAME="CentOS Linux"
[2025-10-12 10:41:11] VERSION="7 (Core)"
[2025-10-12 10:41:11] ID="centos"
[2025-10-12 10:41:11] ID_LIKE="rhel fedora"
[2025-10-12 10:41:11] VERSION_ID="7"
[2025-10-12 10:41:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:41:11] ANSI_COLOR="0;31"
[2025-10-12 10:41:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:41:11] HOME_URL="https://www.centos.org/"
[2025-10-12 10:41:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:41:11] 
[2025-10-12 10:41:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:41:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:41:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:41:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:41:11] 
[2025-10-12 10:41:11] 2025-10-12 14:40:26,803 | INFO     | ***************************************
[2025-10-12 10:41:11] 2025-10-12 14:40:27,304 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-10-12 10:41:11] 2025-10-12 14:40:27,318 | INFO     | sufficient remaining disk space (396290424832 B)
[2025-10-12 10:41:11] 2025-10-12 14:40:27,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:41:11] 2025-10-12 14:40:27,319 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:41:11] 2025-10-12 14:40:27,319 | INFO     | update_server=False
[2025-10-12 10:41:11] 2025-10-12 14:40:27,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:41:11] 2025-10-12 14:40:27,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:41:11] 2025-10-12 14:40:27,319 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:41:11] 2025-10-12 14:40:27,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:41:11] 2025-10-12 14:40:27,596 | INFO     | all payload control threads have been joined
[2025-10-12 10:41:11] 2025-10-12 14:40:27,956 | INFO     | all data control threads have been joined
[2025-10-12 10:41:11] 2025-10-12 14:40:28,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:41:11] 2025-10-12 14:40:28,276 | INFO     | aborting loop
[2025-10-12 10:41:11] 2025-10-12 14:40:28,324 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:28,324 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:28,601 | INFO     | [payload] control thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:28,772 | INFO     | all job control threads have been joined
[2025-10-12 10:41:11] 2025-10-12 14:40:28,868 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:28,876 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:28,956 | INFO     | [job] validate thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:28,960 | INFO     | [data] control thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,280 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,324 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,424 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,480 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,512 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,596 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:29,776 | INFO     | [job] control thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:31,324 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:38,312 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:41:11] 2025-10-12 14:40:39,316 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:41:11] 2025-10-12 14:40:57,485 | INFO     | PID=2124127 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 10:41:11] 2025-10-12 14:40:57,486 | INFO     | .. there are 8 such processes running
[2025-10-12 10:41:11] 2025-10-12 14:40:57,486 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:41:11] 2025-10-12 14:40:57,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:41:11] 2025-10-12 14:40:57,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:41:11] 2025-10-12 14:41:05,905 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:41:11] 2025-10-12 14:41:06,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981778958144)>', '<ExcThread(monitor, started 139981330818816)>']
[2025-10-12 10:41:11] 2025-10-12 14:41:06,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:41:11] 2025-10-12 14:41:06,524 | INFO     | [monitor] control thread has ended
[2025-10-12 10:41:11] 2025-10-12 14:41:11,469 | INFO     | all workflow threads have been joined
[2025-10-12 10:41:11] 2025-10-12 14:41:11,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:41:11] 2025-10-12 14:41:11,469 | INFO     | traces error code: 0
[2025-10-12 10:41:11] 2025-10-12 14:41:11,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:41:11] 2025-10-12 14:41:11,551 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:41:11] 2025-10-12 14:41:11,553 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:41:11] 2025-10-12 14:41:11,555 [wrapper] pilotpid: 2124127
[2025-10-12 10:41:11] 2025-10-12 14:41:11,557 [wrapper] Pilot exit status: 0
[2025-10-12 10:41:11] 2025-10-12 14:41:11,565 [wrapper] pandaids: 6839588877
[2025-10-12 10:41:11] 2025-10-12 14:41:11,597 [wrapper] cleanup supervisor_pilot 2268791 2124128
[2025-10-12 10:41:11] 2025-10-12 14:41:11,600 [wrapper] Test setup, not cleaning
[2025-10-12 10:41:11] 2025-10-12 14:41:11,602 [wrapper] apfmon messages muted
[2025-10-12 10:41:11] 2025-10-12 14:41:11,604 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:41:11] 2025-10-12 14:41:11,606 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:41:11]  *** Error codes and diagnostics ***
[2025-10-12 10:41:11]     "exeErrorCode": 0,
[2025-10-12 10:41:11]     "exeErrorDiag": "",
[2025-10-12 10:41:11]     "pilotErrorCode": 0,
[2025-10-12 10:41:11]     "pilotErrorDiag": "",
[2025-10-12 10:41:11]  *** Listing of results directory ***
[2025-10-12 10:41:11] total 412384
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc    557409 Oct 12 01:26 pilot3.tar.gz
[2025-10-12 10:41:11] -rwx------ 1 boinc boinc     36292 Oct 12 01:37 runpilot2-wrapper.sh
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:37 queuedata.json
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc       100 Oct 12 08:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:41:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 08:41 run_atlas
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc       105 Oct 12 08:41 job.xml
[2025-10-12 10:41:11] -rw-r--r-- 2 boinc boinc 222030418 Oct 12 08:41 EVNT.46676267._004326.pool.root.1
[2025-10-12 10:41:11] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:41 start_atlas.sh
[2025-10-12 10:41:11] drwxrwx--x 2 boinc boinc      4096 Oct 12 08:41 shared
[2025-10-12 10:41:11] -rw-r--r-- 2 boinc boinc    569673 Oct 12 08:41 input.tar.gz
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc      9157 Oct 12 08:41 init_data.xml
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:41 boinc_setup_complete
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc         0 Oct 12 08:41 boinc_lockfile
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc      2549 Oct 12 08:41 pandaJob.out
[2025-10-12 10:41:11] -rw------- 1 boinc boinc    975512 Oct 12 08:41 agis_schedconf.cvmfs.json
[2025-10-12 10:41:11] -rw------- 1 boinc boinc   1560580 Oct 12 08:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:41:11] drwx------ 5 boinc boinc      4096 Oct 12 08:41 pilot3
[2025-10-12 10:41:11] -rw------- 1 boinc boinc 193717025 Oct 12 10:39 HITS.46676269._072069.pool.root.1
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc       530 Oct 12 10:40 boinc_task_state.xml
[2025-10-12 10:41:11] -rw------- 1 boinc boinc      1025 Oct 12 10:40 memory_monitor_summary.json
[2025-10-12 10:41:11] -rw------- 1 boinc boinc    282549 Oct 12 10:40 log.46676269._072069.job.log.tgz.1
[2025-10-12 10:41:11] -rw------- 1 boinc boinc      7748 Oct 12 10:40 heartbeat.json
[2025-10-12 10:41:11] -rw------- 1 boinc boinc        95 Oct 12 10:40 pilot_heartbeat.json
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:41 boinc_mmap_file
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:41 wrapper_checkpoint.txt
[2025-10-12 10:41:11] -rw------- 1 boinc boinc      4903 Oct 12 10:41 pilotlog.txt
[2025-10-12 10:41:11] -rw------- 1 boinc boinc   1031650 Oct 12 10:41 log.46676269._072069.job.log.1
[2025-10-12 10:41:11] -rw------- 1 boinc boinc       357 Oct 12 10:41 output.list
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:41 runtime_log
[2025-10-12 10:41:11] -rw------- 1 boinc boinc   1331200 Oct 12 10:41 result.tar.gz
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc      8764 Oct 12 10:41 runtime_log.err
[2025-10-12 10:41:11] -rw------- 1 boinc boinc       644 Oct 12 10:41 4d4NDmvw3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYJTMDm1Dvwgn.diag
[2025-10-12 10:41:11] -rw-r--r-- 1 boinc boinc     20908 Oct 12 10:41 stderr.txt
[2025-10-12 10:41:11] HITS file was successfully produced:
[2025-10-12 10:41:11] -rw------- 1 boinc boinc 193717025 Oct 12 10:39 shared/HITS.pool.root.1
[2025-10-12 10:41:11]  *** Contents of shared directory: ***
[2025-10-12 10:41:11] total 407892
[2025-10-12 10:41:11] -rw-r--r-- 2 boinc boinc 222030418 Oct 12 08:41 ATLAS.root_0
[2025-10-12 10:41:11] -rw-r--r-- 2 boinc boinc     15120 Oct 12 08:41 start_atlas.sh
[2025-10-12 10:41:11] -rw-r--r-- 2 boinc boinc    569673 Oct 12 08:41 input.tar.gz
[2025-10-12 10:41:11] -rw------- 1 boinc boinc 193717025 Oct 12 10:39 HITS.pool.root.1
[2025-10-12 10:41:11] -rw------- 1 boinc boinc   1331200 Oct 12 10:41 result.tar.gz
10:41:12 (2120254): run_atlas exited; CPU time 27555.041382
10:41:12 (2120254): called boinc_finish(0)

</stderr_txt>
]]>

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