Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:12:51 (3246591): wrapper (7.7.26015): starting
11:12:51 (3246591): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:12:51] Arguments: --nthreads 12
[2025-10-12 11:12:51] Threads: 12
[2025-10-12 11:12:51] Checking for CVMFS
[2025-10-12 11:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:12:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:12:52] 2.11.0.0 3299214 2986 87360 151618 1 188 5363779 6144001 14617 130560 0 58553077 100.000 107476 197 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 11:12:52] CVMFS is ok
[2025-10-12 11:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:12:52] Checking for apptainer binary...
[2025-10-12 11:12:52] apptainer is not installed, using version from CVMFS
[2025-10-12 11:12:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:12:52] radiat0r
[2025-10-12 11:12:52] apptainer works
[2025-10-12 11:12:52] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:12:52] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:12:52] Starting ATLAS job with PandaID=6839162586
[2025-10-12 11:12:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:05:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:05:27]  status=None
[2025-10-12 12:05:27]  status_code=0
[2025-10-12 12:05:27]  storage_token=
[2025-10-12 12:05:27]  surl=/var/lib/boinc/slots/14/PanDA_Pilot-6839162586/log.46676269._067009.job.log.tgz.1
[2025-10-12 12:05:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/94/log.46676269._067009.job.log.tgz.1
[2025-10-12 12:05:27]  workdir=None
[2025-10-12 12:05:27] ]
[2025-10-12 12:05:27] 2025-10-12 12:04:45,340 | INFO     | transferring file log.46676269._067009.job.log.tgz.1 from /var/lib/boinc/slots/14/PanDA_Pilot-6839162586/log.46676269._067009.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 12:05:27] 2025-10-12 12:04:45,340 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/14/PanDA_Pilot-6839162586/log.46676269._067009.job.log.tgz.1 /var/lib/boinc/slots/14/log.46676269._067009.j
[2025-10-12 12:05:27] 2025-10-12 12:04:45,359 | INFO     | adding to output.list: log.46676269._067009.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/94/log.46676269._067009.job.log.tg
[2025-10-12 12:05:27] 2025-10-12 12:04:45,360 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:05:27] 2025-10-12 12:04:45,360 | INFO     | summary of transferred files:
[2025-10-12 12:05:27] 2025-10-12 12:04:45,360 | INFO     |  -- lfn=log.46676269._067009.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:05:27] 2025-10-12 12:04:45,360 | INFO     | stage-out finished correctly
[2025-10-12 12:05:27] 2025-10-12 12:04:45,805 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:05:27] 2025-10-12 12:04:45,920 | INFO     | time since job start (3100s) is within the limit (172800.0s)
[2025-10-12 12:05:27] 2025-10-12 12:04:47,770 | INFO     | monitor loop #216: job 0:6839162586 is in state 'finished'
[2025-10-12 12:05:27] 2025-10-12 12:04:47,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:05:27] 2025-10-12 12:04:47,926 | INFO     | time since job start (3102s) is within the limit (172800.0s)
[2025-10-12 12:05:27] 2025-10-12 12:04:47,978 | INFO     | job 6839162586 has state=finished
[2025-10-12 12:05:27] 2025-10-12 12:04:47,979 | INFO     | preparing for final server update for job 6839162586 in state='finished'
[2025-10-12 12:05:27] 2025-10-12 12:04:47,979 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:05:27] 2025-10-12 12:04:47,979 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:05:27] 2025-10-12 12:04:47,980 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:05:27] 2025-10-12 12:04:47,980 | INFO     | job 6839162586 has finished - writing final server update
[2025-10-12 12:05:27] 2025-10-12 12:04:47,980 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:05:27] 2025-10-12 12:04:47,981 | INFO     | executing command: lscpu
[2025-10-12 12:05:27] 2025-10-12 12:04:48,147 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:05:27] 2025-10-12 12:04:49,931 | INFO     | time since job start (3104s) is within the limit (172800.0s)
[2025-10-12 12:05:27] 2025-10-12 12:04:50,274 | INFO     | monitor loop #217: job 0:6839162586 is in state 'finished'
[2025-10-12 12:05:27] 2025-10-12 12:04:50,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:05:27] 2025-10-12 12:04:51,916 | INFO     | PID=3251330 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 12:05:27] 2025-10-12 12:04:51,916 | INFO     | .. there are 17 such processes running
[2025-10-12 12:05:27] 2025-10-12 12:04:52,777 | INFO     | monitor loop #218: job 0:6839162586 is in state 'finished'
[2025-10-12 12:05:27] 2025-10-12 12:04:52,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:05:27] 2025-10-12 12:04:52,917 | INFO     | time since job start (3107s) is within the limit (172800.0s)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,190 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 12:05:27] 2025-10-12 12:04:54,258 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2321.2049414062494
[2025-10-12 12:05:27] 2025-10-12 12:04:54,332 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6839162586/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,333 | INFO     | extracted standard info from prmon json
[2025-10-12 12:05:27] 2025-10-12 12:04:54,333 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:05:27] 2025-10-12 12:04:54,333 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:05:27] 2025-10-12 12:04:54,334 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:05:27] 2025-10-12 12:04:54,334 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:05:27] 2025-10-12 12:04:54,335 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:05:27] 2025-10-12 12:04:54,335 | INFO     | sum of square deviations: 26400495.0
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | sum of deviations: 625058856.4999999
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | mean x: 1760269233.5
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | mean y: 2674078.840909091
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | -- intersect: -41673509425.43207
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | intersect: -41673509425.43207
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | chi2: 0.0013712605712070055
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | -- intersect: -41673509425.43207
[2025-10-12 12:05:27] 2025-10-12 12:04:54,336 | INFO     | current memory leak: 23.68 B/s (using 44 data points, chi2=0.00)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | could have reported an average CPU frequency of 2308 MHz (5 samples)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | ..............................
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . Timing measurements:
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . get job = 0 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . initial setup = 1 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . payload setup = 7 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . stage-in = 0 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . payload execution = 3069 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,337 | INFO     | . stage-out = 0 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,338 | INFO     | . log creation = 0 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,338 | INFO     | ..............................
[2025-10-12 12:05:27] 2025-10-12 12:04:54,444 | INFO     | 
[2025-10-12 12:05:27] 2025-10-12 12:04:54,444 | INFO     | job summary report
[2025-10-12 12:05:27] 2025-10-12 12:04:54,444 | INFO     | --------------------------------------------------
[2025-10-12 12:05:27] 2025-10-12 12:04:54,444 | INFO     | PanDA job id: 6839162586
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | task id: 46676269
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | errors: (none)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | pilot state: finished 
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | transexitcode: 0
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | exeerrorcode: 0
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | exeerrordiag: 
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | exitcode: 0
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | exitmsg: OK
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | cpuconsumptiontime: 32923 s
[2025-10-12 12:05:27] 2025-10-12 12:04:54,445 | INFO     | nevents: 400
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | neventsw: 0
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | pid: 3259508
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | pgrp: 3259508
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | corecount: 12
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | event service: False
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | sizes: {0: 2348687, 1: 2348886, 8: 2349148, 11: 2349176, 3080: 2374863, 3083: 2384047, 3092: 2384217}
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | --------------------------------------------------
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | 
[2025-10-12 12:05:27] 2025-10-12 12:04:54,446 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-10-12 12:05:27] 2025-10-12 12:04:54,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,472 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:05:27] 2025-10-12 12:04:54,472 | INFO     | job 6839162586 has completed (purged errors)
[2025-10-12 12:05:27] 2025-10-12 12:04:54,472 | INFO     | overall cleanup function is called
[2025-10-12 12:05:27] 2025-10-12 12:04:55,478 | INFO     | --- collectZombieJob: --- 10, [3259508]
[2025-10-12 12:05:27] 2025-10-12 12:04:55,481 | INFO     | zombie collector waiting for pid 3259508
[2025-10-12 12:05:27] 2025-10-12 12:04:55,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:05:27] 2025-10-12 12:04:55,481 | INFO     | collected zombie processes
[2025-10-12 12:05:27] 2025-10-12 12:04:55,481 | INFO     | will attempt to kill all subprocesses of pid=3259508
[2025-10-12 12:05:27] 2025-10-12 12:04:56,166 | INFO     | process IDs to be killed: [3259508] (in reverse order)
[2025-10-12 12:05:27] 2025-10-12 12:04:56,409 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:05:27] 2025-10-12 12:04:56,409 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:05:27] 2025-10-12 12:04:56,431 | INFO     | did not find any defunct processes belonging to 3259508
[2025-10-12 12:05:27] 2025-10-12 12:04:56,449 | INFO     | did not find any defunct processes belonging to 3259508
[2025-10-12 12:05:27] 2025-10-12 12:04:56,449 | INFO     | ready for new job
[2025-10-12 12:05:27] 2025-10-12 12:04:56,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:05:27] 2025-10-12 12:04:56,451 | INFO     | ***************************************
[2025-10-12 12:05:27] 2025-10-12 12:04:56,451 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:05:27] 2025-10-12 12:04:56,451 | INFO     | ***************************************
[2025-10-12 12:05:27] 2025-10-12 12:04:56,451 | INFO     | 
[2025-10-12 12:05:27] 2025-10-12 12:04:56,487 | INFO     | architecture information:
[2025-10-12 12:05:27] 2025-10-12 12:04:56,488 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:05:27] 2025-10-12 12:04:56,513 | INFO     | cat /etc/os-release:
[2025-10-12 12:05:27] NAME="CentOS Linux"
[2025-10-12 12:05:27] VERSION="7 (Core)"
[2025-10-12 12:05:27] ID="centos"
[2025-10-12 12:05:27] ID_LIKE="rhel fedora"
[2025-10-12 12:05:27] VERSION_ID="7"
[2025-10-12 12:05:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:05:27] ANSI_COLOR="0;31"
[2025-10-12 12:05:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:05:27] HOME_URL="https://www.centos.org/"
[2025-10-12 12:05:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:05:27] 
[2025-10-12 12:05:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:05:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:05:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:05:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:05:27] 
[2025-10-12 12:05:27] 2025-10-12 12:04:56,513 | INFO     | ***************************************
[2025-10-12 12:05:27] 2025-10-12 12:04:57,015 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-10-12 12:05:27] 2025-10-12 12:04:57,046 | INFO     | sufficient remaining disk space (1724297248768 B)
[2025-10-12 12:05:27] 2025-10-12 12:04:57,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:05:27] 2025-10-12 12:04:57,047 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:05:27] 2025-10-12 12:04:57,047 | INFO     | update_server=False
[2025-10-12 12:05:27] 2025-10-12 12:04:57,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:05:27] 2025-10-12 12:04:57,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:05:27] 2025-10-12 12:04:57,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:05:27] 2025-10-12 12:04:57,048 | INFO     | aborting loop
[2025-10-12 12:05:27] 2025-10-12 12:04:57,386 | INFO     | all job control threads have been joined
[2025-10-12 12:05:27] 2025-10-12 12:04:57,410 | INFO     | all data control threads have been joined
[2025-10-12 12:05:27] 2025-10-12 12:04:58,050 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,053 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,272 | INFO     | [job] validate thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,392 | INFO     | [job] control thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,415 | INFO     | [data] control thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:05:27] 2025-10-12 12:04:58,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,514 | INFO     | all payload control threads have been joined
[2025-10-12 12:05:27] 2025-10-12 12:04:58,594 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,628 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,662 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,810 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:58,850 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:59,082 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:04:59,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:05:27] 2025-10-12 12:04:59,519 | INFO     | [payload] control thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:05:00,443 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:05:00,454 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:05:01,054 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:05:27] 2025-10-12 12:05:09,694 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:05:27] 2025-10-12 12:05:11,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326336231232)>', '<ExcThread(monitor, started 140325767079680)>']
[2025-10-12 12:05:27] 2025-10-12 12:05:16,618 | INFO     | all workflow threads have been joined
[2025-10-12 12:05:27] 2025-10-12 12:05:16,618 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:05:27] 2025-10-12 12:05:16,619 | INFO     | traces error code: 0
[2025-10-12 12:05:27] 2025-10-12 12:05:16,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | INFO     | PID=3251330 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | INFO     | .. there are 17 such processes running
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:05:27] 2025-10-12 12:05:26,934 | INFO     | [monitor] control thread has ended
[2025-10-12 12:05:27] 2025-10-12 12:05:27,082 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:05:27] 2025-10-12 12:05:27,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:05:27] 2025-10-12 12:05:27,090 [wrapper] pilotpid: 3251330
[2025-10-12 12:05:27] 2025-10-12 12:05:27,094 [wrapper] Pilot exit status: 0
[2025-10-12 12:05:27] 2025-10-12 12:05:27,108 [wrapper] pandaids: 6839162586
[2025-10-12 12:05:27] 2025-10-12 12:05:27,279 [wrapper] cleanup supervisor_pilot 3612441 3251331
[2025-10-12 12:05:27] 2025-10-12 12:05:27,283 [wrapper] Test setup, not cleaning
[2025-10-12 12:05:27] 2025-10-12 12:05:27,287 [wrapper] apfmon messages muted
[2025-10-12 12:05:27] 2025-10-12 12:05:27,291 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:05:27] 2025-10-12 12:05:27,295 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:05:27]  *** Error codes and diagnostics ***
[2025-10-12 12:05:27]     "exeErrorCode": 0,
[2025-10-12 12:05:27]     "exeErrorDiag": "",
[2025-10-12 12:05:27]     "pilotErrorCode": 0,
[2025-10-12 12:05:27]     "pilotErrorDiag": "",
[2025-10-12 12:05:27]  *** Listing of results directory ***
[2025-10-12 12:05:27] total 416628
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc    557409 Oct 11 23:21 pilot3.tar.gz
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc      5112 Oct 11 23:29 queuedata.json
[2025-10-12 12:05:27] -rwx------ 1 boinc boinc     36292 Oct 11 23:30 runpilot2-wrapper.sh
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:05:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:12 run_atlas
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:12 job.xml
[2025-10-12 12:05:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:12 start_atlas.sh
[2025-10-12 12:05:27] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:12 shared
[2025-10-12 12:05:27] -rw-r--r-- 2 boinc boinc    569680 Oct 12 11:12 input.tar.gz
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc      9396 Oct 12 11:12 init_data.xml
[2025-10-12 12:05:27] -rw-r--r-- 2 boinc boinc 221412656 Oct 12 11:12 EVNT.46676267._002712.pool.root.1
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:12 boinc_setup_complete
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:12 boinc_lockfile
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:12 pandaJob.out
[2025-10-12 12:05:27] -rw------- 1 boinc boinc    975520 Oct 12 11:13 agis_schedconf.cvmfs.json
[2025-10-12 12:05:27] -rw------- 1 boinc boinc   1560580 Oct 12 11:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:05:27] drwx------ 5 boinc boinc      4096 Oct 12 11:13 pilot3
[2025-10-12 12:05:27] -rw------- 1 boinc boinc 199666583 Oct 12 12:04 HITS.46676269._067009.pool.root.1
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc       530 Oct 12 12:04 boinc_task_state.xml
[2025-10-12 12:05:27] -rw------- 1 boinc boinc      1028 Oct 12 12:04 memory_monitor_summary.json
[2025-10-12 12:05:27] -rw------- 1 boinc boinc    362043 Oct 12 12:04 log.46676269._067009.job.log.tgz.1
[2025-10-12 12:05:27] -rw------- 1 boinc boinc        95 Oct 12 12:04 pilot_heartbeat.json
[2025-10-12 12:05:27] -rw------- 1 boinc boinc      7742 Oct 12 12:04 heartbeat.json
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc        27 Oct 12 12:05 wrapper_checkpoint.txt
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc      8192 Oct 12 12:05 boinc_mmap_file
[2025-10-12 12:05:27] -rw------- 1 boinc boinc       823 Oct 12 12:05 pilotlog.txt
[2025-10-12 12:05:27] -rw------- 1 boinc boinc    461987 Oct 12 12:05 log.46676269._067009.job.log.1
[2025-10-12 12:05:27] -rw------- 1 boinc boinc       357 Oct 12 12:05 output.list
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc       620 Oct 12 12:05 runtime_log
[2025-10-12 12:05:27] -rw------- 1 boinc boinc    839680 Oct 12 12:05 result.tar.gz
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc      8672 Oct 12 12:05 runtime_log.err
[2025-10-12 12:05:27] -rw------- 1 boinc boinc       644 Oct 12 12:05 L0lMDmRDyR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmjnSMDmZsZYVo.diag
[2025-10-12 12:05:27] -rw-r--r-- 1 boinc boinc     21808 Oct 12 12:05 stderr.txt
[2025-10-12 12:05:27] HITS file was successfully produced:
[2025-10-12 12:05:27] -rw------- 1 boinc boinc 199666583 Oct 12 12:04 shared/HITS.pool.root.1
[2025-10-12 12:05:27]  *** Contents of shared directory: ***
[2025-10-12 12:05:27] total 412616
[2025-10-12 12:05:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:12 start_atlas.sh
[2025-10-12 12:05:27] -rw-r--r-- 2 boinc boinc    569680 Oct 12 11:12 input.tar.gz
[2025-10-12 12:05:27] -rw-r--r-- 2 boinc boinc 221412656 Oct 12 11:12 ATLAS.root_0
[2025-10-12 12:05:27] -rw------- 1 boinc boinc 199666583 Oct 12 12:04 HITS.pool.root.1
[2025-10-12 12:05:27] -rw------- 1 boinc boinc    839680 Oct 12 12:05 result.tar.gz
12:05:28 (3246591): run_atlas exited; CPU time 33105.413486
12:05:28 (3246591): called boinc_finish(0)

</stderr_txt>
]]>

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