Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:07:07 (25354): wrapper (7.7.26015): starting
17:07:07 (25354): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:07:07] Arguments: --nthreads 8
[2025-10-12 17:07:07] Threads: 8
[2025-10-12 17:07:07] Checking for CVMFS
[2025-10-12 17:07:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:07:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:07:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:07:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:07:07] 2.11.2.0 20802 20897 83840 151623 1 155 22588800 25165825 4053 130560 0 5669989 99.847 3169071 1362 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 17:07:07] CVMFS is ok
[2025-10-12 17:07:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:07:07] Checking for apptainer binary...
[2025-10-12 17:07:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:07:07] Running /usr/bin/apptainer --version
[2025-10-12 17:07:07] apptainer version 1.3.2-1.el7
[2025-10-12 17:07:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:07:09] cg-vwn369.simple-grid.lan
[2025-10-12 17:07:09] apptainer works
[2025-10-12 17:07:09] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:07:09] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:07:09] Starting ATLAS job with PandaID=6839588797
[2025-10-12 17:07:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:07:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:07:05] 2025-10-12 19:06:21,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:07:05] 2025-10-12 19:06:21,277 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:07:05] 2025-10-12 19:06:21,278 | INFO     | sum of square deviations: 3922276332.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,280 | INFO     | sum of deviations: 32058977366.000008
[2025-10-12 21:07:05] 2025-10-12 19:06:21,280 | INFO     | mean x: 1760288784.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,280 | INFO     | mean y: 2466848.8068669527
[2025-10-12 21:07:05] 2025-10-12 19:06:21,280 | INFO     | -- intersect: -14385366518.125751
[2025-10-12 21:07:05] 2025-10-12 19:06:21,280 | INFO     | intersect: -14385366518.125751
[2025-10-12 21:07:05] 2025-10-12 19:06:21,281 | INFO     | chi2: 2.2481741897602454
[2025-10-12 21:07:05] 2025-10-12 19:06:21,281 | INFO     | sum of square deviations: 3675146117.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,289 | INFO     | sum of deviations: 46578990732.00001
[2025-10-12 21:07:05] 2025-10-12 19:06:21,289 | INFO     | mean x: 1760288631.5
[2025-10-12 21:07:05] 2025-10-12 19:06:21,290 | INFO     | mean y: 2475643.9298245613
[2025-10-12 21:07:05] 2025-10-12 19:06:21,290 | INFO     | -- intersect: -22307512923.05903
[2025-10-12 21:07:05] 2025-10-12 19:06:21,290 | INFO     | intersect: -22307512923.05903
[2025-10-12 21:07:05] 2025-10-12 19:06:21,290 | INFO     | chi2: 1.4742373741350399
[2025-10-12 21:07:05] 2025-10-12 19:06:21,290 | INFO     | current chi2=1.4742373741350399 (change=34.42512680513165 %)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,291 | INFO     | sum of square deviations: 3438620752.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,293 | INFO     | sum of deviations: 45501224188.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,293 | INFO     | mean x: 1760288479.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,293 | INFO     | mean y: 2474948.9551569507
[2025-10-12 21:07:05] 2025-10-12 19:06:21,293 | INFO     | -- intersect: -23290376021.000404
[2025-10-12 21:07:05] 2025-10-12 19:06:21,293 | INFO     | intersect: -23290376021.000404
[2025-10-12 21:07:05] 2025-10-12 19:06:21,293 | INFO     | chi2: 1.4742665098924699
[2025-10-12 21:07:05] 2025-10-12 19:06:21,294 | INFO     | current chi2=1.4742665098924699 (change=-0.0019763274179041557 %)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,294 | INFO     | right removable region: 222
[2025-10-12 21:07:05] 2025-10-12 19:06:21,294 | INFO     | sum of square deviations: 3675146117.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,296 | INFO     | sum of deviations: -4891139270.999998
[2025-10-12 21:07:05] 2025-10-12 19:06:21,296 | INFO     | mean x: 1760288936.5
[2025-10-12 21:07:05] 2025-10-12 19:06:21,296 | INFO     | mean y: 2489459.8859649124
[2025-10-12 21:07:05] 2025-10-12 19:06:21,296 | INFO     | -- intersect: 2345204027.2866526
[2025-10-12 21:07:05] 2025-10-12 19:06:21,296 | INFO     | intersect: 2345204027.2866526
[2025-10-12 21:07:05] 2025-10-12 19:06:21,297 | INFO     | chi2: 0.8117589356998766
[2025-10-12 21:07:05] 2025-10-12 19:06:21,297 | INFO     | current chi2=0.8117589356998766 (change=63.89252490322177 %)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,297 | INFO     | sum of square deviations: 3438620752.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,299 | INFO     | sum of deviations: -8723049166.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,299 | INFO     | mean x: 1760289089.0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,307 | INFO     | mean y: 2491914.4932735427
[2025-10-12 21:07:05] 2025-10-12 19:06:21,307 | INFO     | -- intersect: 4467970772.779519
[2025-10-12 21:07:05] 2025-10-12 19:06:21,307 | INFO     | intersect: 4467970772.779519
[2025-10-12 21:07:05] 2025-10-12 19:06:21,307 | INFO     | chi2: 0.794903485572418
[2025-10-12 21:07:05] 2025-10-12 19:06:21,308 | INFO     | current chi2=0.794903485572418 (change=2.076410789728638 %)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,308 | INFO     | left removable region: 20
[2025-10-12 21:07:05] 2025-10-12 19:06:21,308 | INFO     | sum of square deviations: 2555770710.5
[2025-10-12 21:07:05] 2025-10-12 19:06:21,310 | INFO     | sum of deviations: 2337935013.499996
[2025-10-12 21:07:05] 2025-10-12 19:06:21,310 | INFO     | mean x: 1760289058.5
[2025-10-12 21:07:05] 2025-10-12 19:06:21,310 | INFO     | mean y: 2504210.599009901
[2025-10-12 21:07:05] 2025-10-12 19:06:21,310 | INFO     | -- intersect: -1607750342.6910877
[2025-10-12 21:07:05] 2025-10-12 19:06:21,310 | INFO     | intersect: -1607750342.6910877
[2025-10-12 21:07:05] 2025-10-12 19:06:21,310 | INFO     | chi2: 0.0011285915639216643
[2025-10-12 21:07:05] 2025-10-12 19:06:21,311 | INFO     | -- intersect: -1607750342.6910877
[2025-10-12 21:07:05] 2025-10-12 19:06:21,311 | INFO     | current memory leak: 0.91 B/s (using 202 data points, chi2=0.00)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,311 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | ..............................
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . Timing measurements:
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . get job = 0 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . initial setup = 2 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . payload setup = 11 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . stage-in = 0 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . payload execution = 14197 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . stage-out = 4 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | . log creation = 1 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,312 | INFO     | ..............................
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | 
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | job summary report
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | --------------------------------------------------
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | PanDA job id: 6839588797
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | task id: 46676269
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | errors: (none)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | pilot state: finished 
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | transexitcode: 0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | exeerrorcode: 0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | exeerrordiag: 
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | exitcode: 0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | exitmsg: OK
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | cpuconsumptiontime: 54561 s
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | nevents: 400
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | neventsw: 0
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | pid: 3264
[2025-10-12 21:07:05] 2025-10-12 19:06:21,481 | INFO     | pgrp: 3264
[2025-10-12 21:07:05] 2025-10-12 19:06:21,482 | INFO     | corecount: 8
[2025-10-12 21:07:05] 2025-10-12 19:06:21,482 | INFO     | event service: False
[2025-10-12 21:07:05] 2025-10-12 19:06:21,482 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348885, 9: 2349175, 13: 2349203, 14214: 2379410, 14219: 2388464, 14314: 2388602}
[2025-10-12 21:07:05] 2025-10-12 19:06:21,482 | INFO     | --------------------------------------------------
[2025-10-12 21:07:05] 2025-10-12 19:06:21,482 | INFO     | 
[2025-10-12 21:07:05] 2025-10-12 19:06:21,482 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-12 21:07:05] 2025-10-12 19:06:21,924 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,924 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,925 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:07:05] 2025-10-12 19:06:21,926 | INFO     | job 6839588797 has completed (purged errors)
[2025-10-12 21:07:05] 2025-10-12 19:06:21,927 | INFO     | overall cleanup function is called
[2025-10-12 21:07:05] 2025-10-12 19:06:22,936 | INFO     | --- collectZombieJob: --- 10, [3264]
[2025-10-12 21:07:05] 2025-10-12 19:06:22,936 | INFO     | zombie collector waiting for pid 3264
[2025-10-12 21:07:05] 2025-10-12 19:06:22,936 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:07:05] 2025-10-12 19:06:22,936 | INFO     | collected zombie processes
[2025-10-12 21:07:05] 2025-10-12 19:06:22,936 | INFO     | will attempt to kill all subprocesses of pid=3264
[2025-10-12 21:07:05] 2025-10-12 19:06:23,062 | INFO     | process IDs to be killed: [3264] (in reverse order)
[2025-10-12 21:07:05] 2025-10-12 19:06:23,790 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:07:05] 2025-10-12 19:06:23,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:07:05] 2025-10-12 19:06:23,794 | INFO     | did not find any defunct processes belonging to 3264
[2025-10-12 21:07:05] 2025-10-12 19:06:23,797 | INFO     | did not find any defunct processes belonging to 3264
[2025-10-12 21:07:05] 2025-10-12 19:06:23,798 | INFO     | ready for new job
[2025-10-12 21:07:05] 2025-10-12 19:06:23,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:07:05] 2025-10-12 19:06:23,800 | INFO     | ***************************************
[2025-10-12 21:07:05] 2025-10-12 19:06:23,800 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:07:05] 2025-10-12 19:06:23,800 | INFO     | ***************************************
[2025-10-12 21:07:05] 2025-10-12 19:06:23,800 | INFO     | 
[2025-10-12 21:07:05] 2025-10-12 19:06:23,801 | INFO     | pilot is running in a VM
[2025-10-12 21:07:05] 2025-10-12 19:06:23,801 | INFO     | architecture information:
[2025-10-12 21:07:05] 2025-10-12 19:06:23,816 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:07:05] 2025-10-12 19:06:24,093 | INFO     | cat /etc/os-release:
[2025-10-12 21:07:05] NAME="CentOS Linux"
[2025-10-12 21:07:05] VERSION="7 (Core)"
[2025-10-12 21:07:05] ID="centos"
[2025-10-12 21:07:05] ID_LIKE="rhel fedora"
[2025-10-12 21:07:05] VERSION_ID="7"
[2025-10-12 21:07:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:07:05] ANSI_COLOR="0;31"
[2025-10-12 21:07:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:07:05] HOME_URL="https://www.centos.org/"
[2025-10-12 21:07:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:07:05] 
[2025-10-12 21:07:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:07:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:07:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:07:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:07:05] 
[2025-10-12 21:07:05] 2025-10-12 19:06:24,094 | INFO     | ***************************************
[2025-10-12 21:07:05] 2025-10-12 19:06:24,597 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-12 21:07:05] 2025-10-12 19:06:24,729 | INFO     | sufficient remaining disk space (495972253696 B)
[2025-10-12 21:07:05] 2025-10-12 19:06:24,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:07:05] 2025-10-12 19:06:24,730 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:07:05] 2025-10-12 19:06:24,730 | INFO     | update_server=False
[2025-10-12 21:07:05] 2025-10-12 19:06:24,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:07:05] 2025-10-12 19:06:24,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:07:05] 2025-10-12 19:06:24,737 | INFO     | aborting loop
[2025-10-12 21:07:05] 2025-10-12 19:06:25,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:07:05] 2025-10-12 19:06:25,553 | INFO     | all data control threads have been joined
[2025-10-12 21:07:05] 2025-10-12 19:06:25,618 | INFO     | all job control threads have been joined
[2025-10-12 21:07:05] 2025-10-12 19:06:25,738 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:25,743 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:25,894 | INFO     | all payload control threads have been joined
[2025-10-12 21:07:05] 2025-10-12 19:06:25,980 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,124 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,462 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,470 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:07:05] 2025-10-12 19:06:26,559 | INFO     | [data] control thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,624 | INFO     | [job] control thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,665 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,900 | INFO     | [payload] control thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:26,936 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:27,081 | INFO     | [job] validate thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:27,258 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:27,500 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:27,867 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:07:05] 2025-10-12 19:06:31,876 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:35,636 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:07:05] 2025-10-12 19:06:36,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:07:05] 2025-10-12 19:06:52,636 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:07:05] 2025-10-12 19:06:53,185 | INFO     | PID=29080 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:07:05] 2025-10-12 19:06:53,186 | INFO     | .. there are 9 such processes running
[2025-10-12 21:07:05] 2025-10-12 19:06:53,187 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:07:05] 2025-10-12 19:06:53,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:07:05] 2025-10-12 19:06:53,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:07:05] 2025-10-12 19:06:54,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860203833152)>', '<ExcThread(monitor, started 139859637303040)>']
[2025-10-12 21:07:05] 2025-10-12 19:06:55,198 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:07:05] 2025-10-12 19:06:55,199 | INFO     | [monitor] control thread has ended
[2025-10-12 21:07:05] 2025-10-12 19:06:59,764 | INFO     | all workflow threads have been joined
[2025-10-12 21:07:05] 2025-10-12 19:06:59,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:07:05] 2025-10-12 19:06:59,764 | INFO     | traces error code: 0
[2025-10-12 21:07:05] 2025-10-12 19:06:59,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:07:05] 2025-10-12 19:07:00,182 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:07:05] 2025-10-12 19:07:00,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:07:05] 2025-10-12 19:07:00,292 [wrapper] pilotpid: 29080
[2025-10-12 21:07:05] 2025-10-12 19:07:00,404 [wrapper] Pilot exit status: 0
[2025-10-12 21:07:05] 2025-10-12 19:07:00,938 [wrapper] pandaids: 6839588797
[2025-10-12 21:07:05] 2025-10-12 19:07:02,005 [wrapper] cleanup supervisor_pilot 13219 29081
[2025-10-12 21:07:05] 2025-10-12 19:07:02,102 [wrapper] Test setup, not cleaning
[2025-10-12 21:07:05] 2025-10-12 19:07:02,159 [wrapper] apfmon messages muted
[2025-10-12 21:07:05] 2025-10-12 19:07:02,260 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:07:05] 2025-10-12 19:07:02,309 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:07:05]  *** Error codes and diagnostics ***
[2025-10-12 21:07:05]     "exeErrorCode": 0,
[2025-10-12 21:07:05]     "exeErrorDiag": "",
[2025-10-12 21:07:05]     "pilotErrorCode": 0,
[2025-10-12 21:07:05]     "pilotErrorDiag": "",
[2025-10-12 21:07:05]  *** Listing of results directory ***
[2025-10-12 21:07:05] total 414380
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc    557409 Oct 12 07:26 pilot3.tar.gz
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc      5112 Oct 12 07:31 queuedata.json
[2025-10-12 21:07:05] -rwx------. 1 boinc boinc     36292 Oct 12 07:31 runpilot2-wrapper.sh
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc       100 Oct 12 17:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:07:05] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 17:07 run_atlas
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc       105 Oct 12 17:07 job.xml
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc      6389 Oct 12 17:07 init_data.xml
[2025-10-12 21:07:05] -rw-r--r--. 2 boinc boinc 223059321 Oct 12 17:07 EVNT.46676267._004322.pool.root.1
[2025-10-12 21:07:05] -rw-r--r--. 2 boinc boinc     15120 Oct 12 17:07 start_atlas.sh
[2025-10-12 21:07:05] drwxrwx--x. 2 boinc boinc        68 Oct 12 17:07 shared
[2025-10-12 21:07:05] -rw-r--r--. 2 boinc boinc    569680 Oct 12 17:07 input.tar.gz
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc         0 Oct 12 17:07 boinc_lockfile
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc      2550 Oct 12 17:07 pandaJob.out
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc    975528 Oct 12 17:07 agis_schedconf.cvmfs.json
[2025-10-12 21:07:05] drwx------. 5 boinc boinc      4096 Oct 12 17:07 pilot3
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc 192580614 Oct 12 21:03 HITS.46676269._071989.pool.root.1
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc       531 Oct 12 21:03 boinc_task_state.xml
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc      1017 Oct 12 21:04 memory_monitor_summary.json
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc   1560580 Oct 12 21:04 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc    470059 Oct 12 21:04 log.46676269._071989.job.log.tgz.1
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc      7780 Oct 12 21:06 heartbeat.json
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc      8192 Oct 12 21:06 boinc_mmap_file
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc        28 Oct 12 21:06 wrapper_checkpoint.txt
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc        95 Oct 12 21:06 pilot_heartbeat.json
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc      4956 Oct 12 21:06 pilotlog.txt
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc   1931583 Oct 12 21:07 log.46676269._071989.job.log.1
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc       357 Oct 12 21:07 output.list
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc       620 Oct 12 21:07 runtime_log
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc   2416640 Oct 12 21:07 result.tar.gz
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc      8703 Oct 12 21:07 runtime_log.err
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc       657 Oct 12 21:07 LfMKDm4q3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm9ITMDm7IPs7n.diag
[2025-10-12 21:07:05] -rw-r--r--. 1 boinc boinc     20557 Oct 12 21:07 stderr.txt
[2025-10-12 21:07:05] HITS file was successfully produced:
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc 192580614 Oct 12 21:03 shared/HITS.pool.root.1
[2025-10-12 21:07:05]  *** Contents of shared directory: ***
[2025-10-12 21:07:05] total 408836
[2025-10-12 21:07:05] -rw-r--r--. 2 boinc boinc 223059321 Oct 12 17:07 ATLAS.root_0
[2025-10-12 21:07:05] -rw-r--r--. 2 boinc boinc     15120 Oct 12 17:07 start_atlas.sh
[2025-10-12 21:07:05] -rw-r--r--. 2 boinc boinc    569680 Oct 12 17:07 input.tar.gz
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc 192580614 Oct 12 21:03 HITS.pool.root.1
[2025-10-12 21:07:05] -rw-------. 1 boinc boinc   2416640 Oct 12 21:07 result.tar.gz
21:07:06 (25354): run_atlas exited; CPU time 54744.843885
21:07:06 (25354): called boinc_finish(0)

</stderr_txt>
]]>

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