Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:14:28 (3210235): wrapper (7.7.26015): starting
21:14:28 (3210235): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 21:14:28] Arguments: --nthreads 3
[2025-10-12 21:14:28] Threads: 3
[2025-10-12 21:14:28] Checking for CVMFS
[2025-10-12 21:14:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:14:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:14:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:14:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:14:29] 2.9.2.0 1859496 4391 81796 151633 1 57 29710038 36864000 0 130560 0 3544272 99.991 155689 905 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:14:29] CVMFS is ok
[2025-10-12 21:14:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:14:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:14:29] Further information can be found at the LHC@home message board.
[2025-10-12 21:14:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:14:29] Checking for apptainer binary...
[2025-10-12 21:14:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:14:29] Running /usr/bin/apptainer --version
[2025-10-12 21:14:29] apptainer version 1.4.1-1.1
[2025-10-12 21:14:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:14:29] atlasA228b
[2025-10-12 21:14:29] apptainer works
[2025-10-12 21:14:29] Set ATHENA_PROC_NUMBER=3
[2025-10-12 21:14:29] Set ATHENA_CORE_NUMBER=3
[2025-10-12 21:14:29] Starting ATLAS job with PandaID=6839474999
[2025-10-12 21:14:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:33:51]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:33:51] 2025-10-12 20:33:19,606 | INFO     | overall cleanup function is called
[2025-10-12 22:33:51] 2025-10-12 20:33:20,613 | INFO     | --- collectZombieJob: --- 10, [3220381]
[2025-10-12 22:33:51] 2025-10-12 20:33:20,613 | INFO     | zombie collector waiting for pid 3220381
[2025-10-12 22:33:51] 2025-10-12 20:33:20,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:33:51] 2025-10-12 20:33:20,613 | INFO     | collected zombie processes
[2025-10-12 22:33:51] 2025-10-12 20:33:20,613 | INFO     | will attempt to kill all subprocesses of pid=3220381
[2025-10-12 22:33:51] 2025-10-12 20:33:20,658 | INFO     | process IDs to be killed: [3220381] (in reverse order)
[2025-10-12 22:33:51] 2025-10-12 20:33:20,684 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:33:51] 2025-10-12 20:33:20,684 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:33:51] 2025-10-12 20:33:20,685 | INFO     | did not find any defunct processes belonging to 3220381
[2025-10-12 22:33:51] 2025-10-12 20:33:20,686 | INFO     | did not find any defunct processes belonging to 3220381
[2025-10-12 22:33:51] 2025-10-12 20:33:20,686 | INFO     | ready for new job
[2025-10-12 22:33:51] 2025-10-12 20:33:20,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:33:51] 2025-10-12 20:33:20,687 | INFO     | ***************************************
[2025-10-12 22:33:51] 2025-10-12 20:33:20,687 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:33:51] 2025-10-12 20:33:20,687 | INFO     | ***************************************
[2025-10-12 22:33:51] 2025-10-12 20:33:20,687 | INFO     | 
[2025-10-12 22:33:51] 2025-10-12 20:33:20,687 | INFO     | architecture information:
[2025-10-12 22:33:51] 2025-10-12 20:33:20,688 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:33:51] 2025-10-12 20:33:20,697 | INFO     | cat /etc/os-release:
[2025-10-12 22:33:51] NAME="CentOS Linux"
[2025-10-12 22:33:51] VERSION="7 (Core)"
[2025-10-12 22:33:51] ID="centos"
[2025-10-12 22:33:51] ID_LIKE="rhel fedora"
[2025-10-12 22:33:51] VERSION_ID="7"
[2025-10-12 22:33:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:33:51] ANSI_COLOR="0;31"
[2025-10-12 22:33:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:33:51] HOME_URL="https://www.centos.org/"
[2025-10-12 22:33:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:33:51] 
[2025-10-12 22:33:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:33:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:33:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:33:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:33:51] 
[2025-10-12 22:33:51] 2025-10-12 20:33:20,697 | INFO     | ***************************************
[2025-10-12 22:33:51] 2025-10-12 20:33:21,200 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:33:51] 2025-10-12 20:33:21,214 | INFO     | sufficient remaining disk space (274852741120 B)
[2025-10-12 22:33:51] 2025-10-12 20:33:21,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:33:51] 2025-10-12 20:33:21,215 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:33:51] 2025-10-12 20:33:21,215 | INFO     | update_server=False
[2025-10-12 22:33:51] 2025-10-12 20:33:21,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:33:51] 2025-10-12 20:33:21,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:33:51] 2025-10-12 20:33:21,215 | INFO     | aborting loop
[2025-10-12 22:33:51] 2025-10-12 20:33:21,309 | INFO     | all job control threads have been joined
[2025-10-12 22:33:51] 2025-10-12 20:33:21,608 | INFO     | all payload control threads have been joined
[2025-10-12 22:33:51] 2025-10-12 20:33:21,903 | INFO     | all data control threads have been joined
[2025-10-12 22:33:51] 2025-10-12 20:33:22,220 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,221 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,238 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,270 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,286 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:33:51] 2025-10-12 20:33:22,315 | INFO     | [job] control thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:33:51] 2025-10-12 20:33:22,512 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,614 | INFO     | [payload] control thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,909 | INFO     | [data] control thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:22,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:23,285 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:23,325 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:23,479 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:23,652 | INFO     | [job] validate thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:24,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:33:51] 2025-10-12 20:33:24,292 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:25,195 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:26,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:33:51] 2025-10-12 20:33:41,043 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:33:51] 2025-10-12 20:33:41,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666813536064)>', '<ExcThread(monitor, started 139666070161152)>']
[2025-10-12 22:33:51] 2025-10-12 20:33:46,149 | INFO     | all workflow threads have been joined
[2025-10-12 22:33:51] 2025-10-12 20:33:46,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:33:51] 2025-10-12 20:33:46,149 | INFO     | traces error code: 0
[2025-10-12 22:33:51] 2025-10-12 20:33:46,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:33:51] 2025-10-12 20:33:51,044 | INFO     | PID=3213950 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:33:51] 2025-10-12 20:33:51,044 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:33:51] 2025-10-12 20:33:51,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:33:51] 2025-10-12 20:33:51,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:33:51] 2025-10-12 20:33:51,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:33:51] 2025-10-12 20:33:51,045 | INFO     | [monitor] control thread has ended
[2025-10-12 22:33:51] 2025-10-12 20:33:51,093 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:33:51] 2025-10-12 20:33:51,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:33:51] 2025-10-12 20:33:51,098 [wrapper] pilotpid: 3213950
[2025-10-12 22:33:51] 2025-10-12 20:33:51,100 [wrapper] Pilot exit status: 0
[2025-10-12 22:33:51] 2025-10-12 20:33:51,108 [wrapper] pandaids: 6839474999
[2025-10-12 22:33:51] 2025-10-12 20:33:51,126 [wrapper] cleanup supervisor_pilot 3232164 3213951
[2025-10-12 22:33:51] 2025-10-12 20:33:51,129 [wrapper] Test setup, not cleaning
[2025-10-12 22:33:51] 2025-10-12 20:33:51,131 [wrapper] apfmon messages muted
[2025-10-12 22:33:51] 2025-10-12 20:33:51,134 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:33:51] 2025-10-12 20:33:51,136 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:33:51]  *** Error codes and diagnostics ***
[2025-10-12 22:33:51]     "exeErrorCode": 0,
[2025-10-12 22:33:51]     "exeErrorDiag": "",
[2025-10-12 22:33:51]     "pilotErrorCode": 0,
[2025-10-12 22:33:51]     "pilotErrorDiag": "",
[2025-10-12 22:33:51]  *** Listing of results directory ***
[2025-10-12 22:33:51] total 411168
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 22:33:51] -rwx------ 1 boinc boinc     36292 Oct 12 07:20 runpilot2-wrapper.sh
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:20 queuedata.json
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:33:51] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:14 run_atlas
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:14 job.xml
[2025-10-12 22:33:51] -rw-r--r-- 2 boinc boinc 222190551 Oct 12 21:14 EVNT.46676267._004315.pool.root.1
[2025-10-12 22:33:51] -rw-r--r-- 2 boinc boinc    569677 Oct 12 21:14 input.tar.gz
[2025-10-12 22:33:51] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:14 start_atlas.sh
[2025-10-12 22:33:51] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:14 shared
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:14 boinc_setup_complete
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc      6449 Oct 12 21:14 init_data.xml
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:14 boinc_lockfile
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:14 pandaJob.out
[2025-10-12 22:33:51] -rw------- 1 boinc boinc    975528 Oct 12 21:14 agis_schedconf.cvmfs.json
[2025-10-12 22:33:51] -rw------- 1 boinc boinc   1560580 Oct 12 21:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:33:51] drwx------ 5 boinc boinc      4096 Oct 12 21:14 pilot3
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:32 boinc_task_state.xml
[2025-10-12 22:33:51] -rw------- 1 boinc boinc 193076023 Oct 12 22:32 HITS.46676269._071757.pool.root.1
[2025-10-12 22:33:51] -rw------- 1 boinc boinc        95 Oct 12 22:32 pilot_heartbeat.json
[2025-10-12 22:33:51] -rw------- 1 boinc boinc      1017 Oct 12 22:33 memory_monitor_summary.json
[2025-10-12 22:33:51] -rw------- 1 boinc boinc    245453 Oct 12 22:33 log.46676269._071757.job.log.tgz.1
[2025-10-12 22:33:51] -rw------- 1 boinc boinc      7753 Oct 12 22:33 heartbeat.json
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:33 boinc_mmap_file
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:33 wrapper_checkpoint.txt
[2025-10-12 22:33:51] -rw------- 1 boinc boinc       747 Oct 12 22:33 pilotlog.txt
[2025-10-12 22:33:51] -rw------- 1 boinc boinc    696272 Oct 12 22:33 log.46676269._071757.job.log.1
[2025-10-12 22:33:51] -rw------- 1 boinc boinc       357 Oct 12 22:33 output.list
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:33 runtime_log
[2025-10-12 22:33:51] -rw------- 1 boinc boinc    962560 Oct 12 22:33 result.tar.gz
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc      8797 Oct 12 22:33 runtime_log.err
[2025-10-12 22:33:51] -rw------- 1 boinc boinc       662 Oct 12 22:33 pU9LDmxg3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNiiNDmDY8WTo.diag
[2025-10-12 22:33:51] -rw-r--r-- 1 boinc boinc     10711 Oct 12 22:33 stderr.txt
[2025-10-12 22:33:51] HITS file was successfully produced:
[2025-10-12 22:33:51] -rw------- 1 boinc boinc 193076023 Oct 12 22:32 shared/HITS.pool.root.1
[2025-10-12 22:33:51]  *** Contents of shared directory: ***
[2025-10-12 22:33:51] total 407060
[2025-10-12 22:33:51] -rw-r--r-- 2 boinc boinc 222190551 Oct 12 21:14 ATLAS.root_0
[2025-10-12 22:33:51] -rw-r--r-- 2 boinc boinc    569677 Oct 12 21:14 input.tar.gz
[2025-10-12 22:33:51] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:14 start_atlas.sh
[2025-10-12 22:33:51] -rw------- 1 boinc boinc 193076023 Oct 12 22:32 HITS.pool.root.1
[2025-10-12 22:33:51] -rw------- 1 boinc boinc    962560 Oct 12 22:33 result.tar.gz
22:33:52 (3210235): run_atlas exited; CPU time 13533.769158
22:33:52 (3210235): called boinc_finish(0)

</stderr_txt>
]]>

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