Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:53:47 (3049139): wrapper (7.7.26015): starting
20:53:47 (3049139): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 20:53:47] Arguments: --nthreads 3
[2025-10-12 20:53:47] Threads: 3
[2025-10-12 20:53:47] Checking for CVMFS
[2025-10-12 20:53:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:53:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:53:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:53:47] 2.9.2.0 1670520 4522 82156 151633 3 57 30135719 36864000 0 130560 0 3610797 99.991 162653 868 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 20:53:47] CVMFS is ok
[2025-10-12 20:53:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:53:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:53:47] Further information can be found at the LHC@home message board.
[2025-10-12 20:53:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:53:47] Checking for apptainer binary...
[2025-10-12 20:53:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:53:47] Running /usr/bin/apptainer --version
[2025-10-12 20:53:48] apptainer version 1.4.1-1.1
[2025-10-12 20:53:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:53:48] magicA246
[2025-10-12 20:53:48] apptainer works
[2025-10-12 20:53:48] Set ATHENA_PROC_NUMBER=3
[2025-10-12 20:53:48] Set ATHENA_CORE_NUMBER=3
[2025-10-12 20:53:48] Starting ATLAS job with PandaID=6839474233
[2025-10-12 20:53:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:14:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | job 6839474233 has completed (purged errors)
[2025-10-12 22:14:07] 2025-10-12 20:13:35,834 | INFO     | overall cleanup function is called
[2025-10-12 22:14:07] 2025-10-12 20:13:36,840 | INFO     | --- collectZombieJob: --- 10, [3059303]
[2025-10-12 22:14:07] 2025-10-12 20:13:36,841 | INFO     | zombie collector waiting for pid 3059303
[2025-10-12 22:14:07] 2025-10-12 20:13:36,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:14:07] 2025-10-12 20:13:36,841 | INFO     | collected zombie processes
[2025-10-12 22:14:07] 2025-10-12 20:13:36,841 | INFO     | will attempt to kill all subprocesses of pid=3059303
[2025-10-12 22:14:07] 2025-10-12 20:13:36,883 | INFO     | process IDs to be killed: [3059303] (in reverse order)
[2025-10-12 22:14:07] 2025-10-12 20:13:36,908 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:14:07] 2025-10-12 20:13:36,909 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:14:07] 2025-10-12 20:13:36,910 | INFO     | did not find any defunct processes belonging to 3059303
[2025-10-12 22:14:07] 2025-10-12 20:13:36,911 | INFO     | did not find any defunct processes belonging to 3059303
[2025-10-12 22:14:07] 2025-10-12 20:13:36,911 | INFO     | ready for new job
[2025-10-12 22:14:07] 2025-10-12 20:13:36,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:14:07] 2025-10-12 20:13:36,912 | INFO     | ***************************************
[2025-10-12 22:14:07] 2025-10-12 20:13:36,912 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:14:07] 2025-10-12 20:13:36,912 | INFO     | ***************************************
[2025-10-12 22:14:07] 2025-10-12 20:13:36,912 | INFO     | 
[2025-10-12 22:14:07] 2025-10-12 20:13:36,912 | INFO     | architecture information:
[2025-10-12 22:14:07] 2025-10-12 20:13:36,912 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:14:07] 2025-10-12 20:13:36,921 | INFO     | cat /etc/os-release:
[2025-10-12 22:14:07] NAME="CentOS Linux"
[2025-10-12 22:14:07] VERSION="7 (Core)"
[2025-10-12 22:14:07] ID="centos"
[2025-10-12 22:14:07] ID_LIKE="rhel fedora"
[2025-10-12 22:14:07] VERSION_ID="7"
[2025-10-12 22:14:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:14:07] ANSI_COLOR="0;31"
[2025-10-12 22:14:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:14:07] HOME_URL="https://www.centos.org/"
[2025-10-12 22:14:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:14:07] 
[2025-10-12 22:14:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:14:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:14:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:14:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:14:07] 
[2025-10-12 22:14:07] 2025-10-12 20:13:36,921 | INFO     | ***************************************
[2025-10-12 22:14:07] 2025-10-12 20:13:37,425 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:14:07] 2025-10-12 20:13:37,438 | INFO     | sufficient remaining disk space (374757916672 B)
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | INFO     | update_server=False
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:14:07] 2025-10-12 20:13:37,439 | INFO     | aborting loop
[2025-10-12 22:14:07] 2025-10-12 20:13:37,500 | INFO     | all data control threads have been joined
[2025-10-12 22:14:07] 2025-10-12 20:13:38,095 | INFO     | all payload control threads have been joined
[2025-10-12 22:14:07] 2025-10-12 20:13:38,445 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,445 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,445 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,501 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,505 | INFO     | [data] control thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,594 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,607 | INFO     | all job control threads have been joined
[2025-10-12 22:14:07] 2025-10-12 20:13:38,700 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:38,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:14:07] 2025-10-12 20:13:39,100 | INFO     | [payload] control thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:39,467 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:39,613 | INFO     | [job] control thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:39,627 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:39,850 | INFO     | [job] validate thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:39,895 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:40,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:14:07] 2025-10-12 20:13:40,926 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:44,072 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:13:48,244 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:14:07] 2025-10-12 20:13:49,249 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:14:07] 2025-10-12 20:14:00,186 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:14:07] 2025-10-12 20:14:02,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241831982912)>', '<ExcThread(monitor, started 140241193125632)>']
[2025-10-12 22:14:07] 2025-10-12 20:14:07,187 | INFO     | all workflow threads have been joined
[2025-10-12 22:14:07] 2025-10-12 20:14:07,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:14:07] 2025-10-12 20:14:07,187 | INFO     | traces error code: 0
[2025-10-12 22:14:07] 2025-10-12 20:14:07,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:14:07] 2025-10-12 20:14:07,741 | INFO     | PID=3052859 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:14:07] 2025-10-12 20:14:07,741 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:14:07] 2025-10-12 20:14:07,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:14:07] 2025-10-12 20:14:07,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:14:07] 2025-10-12 20:14:07,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:14:07] 2025-10-12 20:14:07,741 | INFO     | [monitor] control thread has ended
[2025-10-12 22:14:07] 2025-10-12 20:14:07,792 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:14:07] 2025-10-12 20:14:07,794 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:14:07] 2025-10-12 20:14:07,797 [wrapper] pilotpid: 3052859
[2025-10-12 22:14:07] 2025-10-12 20:14:07,800 [wrapper] Pilot exit status: 0
[2025-10-12 22:14:07] 2025-10-12 20:14:07,807 [wrapper] pandaids: 6839474233
[2025-10-12 22:14:07] 2025-10-12 20:14:07,824 [wrapper] cleanup supervisor_pilot 3071073 3052860
[2025-10-12 22:14:07] 2025-10-12 20:14:07,827 [wrapper] Test setup, not cleaning
[2025-10-12 22:14:07] 2025-10-12 20:14:07,830 [wrapper] apfmon messages muted
[2025-10-12 22:14:07] 2025-10-12 20:14:07,832 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:14:07] 2025-10-12 20:14:07,834 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:14:07]  *** Error codes and diagnostics ***
[2025-10-12 22:14:07]     "exeErrorCode": 0,
[2025-10-12 22:14:07]     "exeErrorDiag": "",
[2025-10-12 22:14:07]     "pilotErrorCode": 0,
[2025-10-12 22:14:07]     "pilotErrorDiag": "",
[2025-10-12 22:14:07]  *** Listing of results directory ***
[2025-10-12 22:14:07] total 411072
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:07 queuedata.json
[2025-10-12 22:14:07] -rwx------ 1 boinc boinc     36292 Oct 12 07:08 runpilot2-wrapper.sh
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:14:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:53 run_atlas
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:53 job.xml
[2025-10-12 22:14:07] -rw-r--r-- 2 boinc boinc 218880837 Oct 12 20:53 EVNT.46676267._001559.pool.root.1
[2025-10-12 22:14:07] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:53 shared
[2025-10-12 22:14:07] -rw-r--r-- 2 boinc boinc    569690 Oct 12 20:53 input.tar.gz
[2025-10-12 22:14:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:53 start_atlas.sh
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:53 boinc_setup_complete
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc      6448 Oct 12 20:53 init_data.xml
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:53 boinc_lockfile
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc      2550 Oct 12 20:53 pandaJob.out
[2025-10-12 22:14:07] -rw------- 1 boinc boinc    975528 Oct 12 20:53 agis_schedconf.cvmfs.json
[2025-10-12 22:14:07] -rw------- 1 boinc boinc   1560580 Oct 12 20:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:14:07] drwx------ 5 boinc boinc      4096 Oct 12 20:53 pilot3
[2025-10-12 22:14:07] -rw------- 1 boinc boinc 196222827 Oct 12 22:13 HITS.46676269._071599.pool.root.1
[2025-10-12 22:14:07] -rw------- 1 boinc boinc        95 Oct 12 22:13 pilot_heartbeat.json
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:13 boinc_task_state.xml
[2025-10-12 22:14:07] -rw------- 1 boinc boinc      1027 Oct 12 22:13 memory_monitor_summary.json
[2025-10-12 22:14:07] -rw------- 1 boinc boinc    267277 Oct 12 22:13 log.46676269._071599.job.log.tgz.1
[2025-10-12 22:14:07] -rw------- 1 boinc boinc      7756 Oct 12 22:13 heartbeat.json
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:13 boinc_mmap_file
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:13 wrapper_checkpoint.txt
[2025-10-12 22:14:07] -rw------- 1 boinc boinc       747 Oct 12 22:14 pilotlog.txt
[2025-10-12 22:14:07] -rw------- 1 boinc boinc    703934 Oct 12 22:14 log.46676269._071599.job.log.1
[2025-10-12 22:14:07] -rw------- 1 boinc boinc       357 Oct 12 22:14 output.list
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:14 runtime_log
[2025-10-12 22:14:07] -rw------- 1 boinc boinc    993280 Oct 12 22:14 result.tar.gz
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc      8792 Oct 12 22:14 runtime_log.err
[2025-10-12 22:14:07] -rw------- 1 boinc boinc       661 Oct 12 22:14 BpCODm4U3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIhiNDmK77Wom.diag
[2025-10-12 22:14:07] -rw-r--r-- 1 boinc boinc     11412 Oct 12 22:14 stderr.txt
[2025-10-12 22:14:07] HITS file was successfully produced:
[2025-10-12 22:14:07] -rw------- 1 boinc boinc 196222827 Oct 12 22:13 shared/HITS.pool.root.1
[2025-10-12 22:14:07]  *** Contents of shared directory: ***
[2025-10-12 22:14:07] total 406932
[2025-10-12 22:14:07] -rw-r--r-- 2 boinc boinc 218880837 Oct 12 20:53 ATLAS.root_0
[2025-10-12 22:14:07] -rw-r--r-- 2 boinc boinc    569690 Oct 12 20:53 input.tar.gz
[2025-10-12 22:14:07] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:53 start_atlas.sh
[2025-10-12 22:14:07] -rw------- 1 boinc boinc 196222827 Oct 12 22:13 HITS.pool.root.1
[2025-10-12 22:14:07] -rw------- 1 boinc boinc    993280 Oct 12 22:14 result.tar.gz
22:14:09 (3049139): run_atlas exited; CPU time 13718.083659
22:14:09 (3049139): called boinc_finish(0)

</stderr_txt>
]]>

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