Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:36:19 (3311090): wrapper (7.7.26015): starting
21:36:19 (3311090): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 21:36:19] Arguments: --nthreads 4
[2025-10-12 21:36:19] Threads: 4
[2025-10-12 21:36:19] Checking for CVMFS
[2025-10-12 21:36:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:36:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:36:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:36:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:36:19] 2.9.2.0 1748675 4575 97020 151635 1 56 29235913 36864000 0 130560 0 4066569 99.992 163953 883 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:36:19] CVMFS is ok
[2025-10-12 21:36:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:36:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:36:19] Further information can be found at the LHC@home message board.
[2025-10-12 21:36:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:36:19] Checking for apptainer binary...
[2025-10-12 21:36:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:36:19] Running /usr/bin/apptainer --version
[2025-10-12 21:36:19] apptainer version 1.4.1-1.1
[2025-10-12 21:36:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:36:19] thA375a
[2025-10-12 21:36:19] apptainer works
[2025-10-12 21:36:19] Set ATHENA_PROC_NUMBER=4
[2025-10-12 21:36:19] Set ATHENA_CORE_NUMBER=4
[2025-10-12 21:36:19] Starting ATLAS job with PandaID=6839475097
[2025-10-12 21:36:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:56:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,461 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:56:02] 2025-10-12 20:55:30,461 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,461 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:56:02] 2025-10-12 20:55:30,461 | INFO     | job 6839475097 has completed (purged errors)
[2025-10-12 22:56:02] 2025-10-12 20:55:30,461 | INFO     | overall cleanup function is called
[2025-10-12 22:56:02] 2025-10-12 20:55:31,467 | INFO     | --- collectZombieJob: --- 10, [3321445]
[2025-10-12 22:56:02] 2025-10-12 20:55:31,468 | INFO     | zombie collector waiting for pid 3321445
[2025-10-12 22:56:02] 2025-10-12 20:55:31,468 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:56:02] 2025-10-12 20:55:31,468 | INFO     | collected zombie processes
[2025-10-12 22:56:02] 2025-10-12 20:55:31,468 | INFO     | will attempt to kill all subprocesses of pid=3321445
[2025-10-12 22:56:02] 2025-10-12 20:55:31,513 | INFO     | process IDs to be killed: [3321445] (in reverse order)
[2025-10-12 22:56:02] 2025-10-12 20:55:31,546 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:56:02] 2025-10-12 20:55:31,546 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:56:02] 2025-10-12 20:55:31,548 | INFO     | did not find any defunct processes belonging to 3321445
[2025-10-12 22:56:02] 2025-10-12 20:55:31,549 | INFO     | did not find any defunct processes belonging to 3321445
[2025-10-12 22:56:02] 2025-10-12 20:55:31,549 | INFO     | ready for new job
[2025-10-12 22:56:02] 2025-10-12 20:55:31,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:56:02] 2025-10-12 20:55:31,550 | INFO     | ***************************************
[2025-10-12 22:56:02] 2025-10-12 20:55:31,550 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:56:02] 2025-10-12 20:55:31,550 | INFO     | ***************************************
[2025-10-12 22:56:02] 2025-10-12 20:55:31,550 | INFO     | 
[2025-10-12 22:56:02] 2025-10-12 20:55:31,551 | INFO     | architecture information:
[2025-10-12 22:56:02] 2025-10-12 20:55:31,551 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:56:02] 2025-10-12 20:55:31,565 | INFO     | cat /etc/os-release:
[2025-10-12 22:56:02] NAME="CentOS Linux"
[2025-10-12 22:56:02] VERSION="7 (Core)"
[2025-10-12 22:56:02] ID="centos"
[2025-10-12 22:56:02] ID_LIKE="rhel fedora"
[2025-10-12 22:56:02] VERSION_ID="7"
[2025-10-12 22:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:56:02] ANSI_COLOR="0;31"
[2025-10-12 22:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:56:02] HOME_URL="https://www.centos.org/"
[2025-10-12 22:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:56:02] 
[2025-10-12 22:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:56:02] 
[2025-10-12 22:56:02] 2025-10-12 20:55:31,565 | INFO     | ***************************************
[2025-10-12 22:56:02] 2025-10-12 20:55:32,068 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:56:02] 2025-10-12 20:55:32,086 | INFO     | sufficient remaining disk space (229828984832 B)
[2025-10-12 22:56:02] 2025-10-12 20:55:32,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:56:02] 2025-10-12 20:55:32,086 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:56:02] 2025-10-12 20:55:32,086 | INFO     | update_server=False
[2025-10-12 22:56:02] 2025-10-12 20:55:32,087 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:56:02] 2025-10-12 20:55:32,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:56:02] 2025-10-12 20:55:32,258 | INFO     | all data control threads have been joined
[2025-10-12 22:56:02] 2025-10-12 20:55:32,334 | INFO     | all job control threads have been joined
[2025-10-12 22:56:02] 2025-10-12 20:55:32,388 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:56:02] 2025-10-12 20:55:32,389 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:56:02] 2025-10-12 20:55:32,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:56:02] 2025-10-12 20:55:32,389 | INFO     | will abort loop
[2025-10-12 22:56:02] 2025-10-12 20:55:32,420 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:56:02] 2025-10-12 20:55:33,088 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,089 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,136 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:56:02] 2025-10-12 20:55:33,162 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,264 | INFO     | [data] control thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,340 | INFO     | [job] control thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,395 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,443 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,512 | INFO     | all payload control threads have been joined
[2025-10-12 22:56:02] 2025-10-12 20:55:33,536 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:56:02] 2025-10-12 20:55:33,711 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,744 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:33,957 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:34,426 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:34,468 | INFO     | [job] validate thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:34,495 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:34,518 | INFO     | [payload] control thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:34,582 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:37,143 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:56:02] 2025-10-12 20:55:38,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843919492928)>', '<ExcThread(monitor, started 139842977519360)>']
[2025-10-12 22:56:02] 2025-10-12 20:55:43,463 | INFO     | all workflow threads have been joined
[2025-10-12 22:56:02] 2025-10-12 20:55:43,464 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:56:02] 2025-10-12 20:55:43,464 | INFO     | traces error code: 0
[2025-10-12 22:56:02] 2025-10-12 20:55:43,464 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:56:02] 2025-10-12 20:56:02,793 | INFO     | PID=3314887 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:56:02] 2025-10-12 20:56:02,794 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:56:02] 2025-10-12 20:56:02,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:56:02] 2025-10-12 20:56:02,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:56:02] 2025-10-12 20:56:02,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:56:02] 2025-10-12 20:56:02,794 | INFO     | [monitor] control thread has ended
[2025-10-12 22:56:02] 2025-10-12 20:56:02,871 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:56:02] 2025-10-12 20:56:02,875 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:56:02] 2025-10-12 20:56:02,879 [wrapper] pilotpid: 3314887
[2025-10-12 22:56:02] 2025-10-12 20:56:02,883 [wrapper] Pilot exit status: 0
[2025-10-12 22:56:02] 2025-10-12 20:56:02,896 [wrapper] pandaids: 6839475097
[2025-10-12 22:56:02] 2025-10-12 20:56:02,919 [wrapper] cleanup supervisor_pilot 3334189 3314888
[2025-10-12 22:56:02] 2025-10-12 20:56:02,923 [wrapper] Test setup, not cleaning
[2025-10-12 22:56:02] 2025-10-12 20:56:02,927 [wrapper] apfmon messages muted
[2025-10-12 22:56:02] 2025-10-12 20:56:02,931 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:56:02] 2025-10-12 20:56:02,935 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:56:02]  *** Error codes and diagnostics ***
[2025-10-12 22:56:02]     "exeErrorCode": 65,
[2025-10-12 22:56:02]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-12 22:56:02]     "pilotErrorCode": 1305,
[2025-10-12 22:56:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-12 22:56:02]  *** Listing of results directory ***
[2025-10-12 22:56:02] total 220820
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:21 queuedata.json
[2025-10-12 22:56:02] -rwx------ 1 boinc boinc     36292 Oct 12 07:21 runpilot2-wrapper.sh
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:56:02] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:36 run_atlas
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:36 job.xml
[2025-10-12 22:56:02] -rw-r--r-- 2 boinc boinc 220303957 Oct 12 21:36 EVNT.46676267._004318.pool.root.1
[2025-10-12 22:56:02] -rw-r--r-- 2 boinc boinc    569679 Oct 12 21:36 input.tar.gz
[2025-10-12 22:56:02] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:36 start_atlas.sh
[2025-10-12 22:56:02] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:36 shared
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:36 boinc_setup_complete
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc      6378 Oct 12 21:36 init_data.xml
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:36 boinc_lockfile
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:36 pandaJob.out
[2025-10-12 22:56:02] -rw------- 1 boinc boinc    975536 Oct 12 21:36 agis_schedconf.cvmfs.json
[2025-10-12 22:56:02] -rw------- 1 boinc boinc   1560580 Oct 12 21:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:56:02] drwx------ 5 boinc boinc      4096 Oct 12 21:36 pilot3
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc       530 Oct 12 22:53 boinc_task_state.xml
[2025-10-12 22:56:02] -rw------- 1 boinc boinc      1025 Oct 12 22:53 memory_monitor_summary.json
[2025-10-12 22:56:02] -rw------- 1 boinc boinc    257885 Oct 12 22:53 log.46676269._071831.job.log.tgz.1
[2025-10-12 22:56:02] -rw------- 1 boinc boinc      9852 Oct 12 22:55 heartbeat.json
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:55 wrapper_checkpoint.txt
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:55 boinc_mmap_file
[2025-10-12 22:56:02] -rw------- 1 boinc boinc       747 Oct 12 22:56 pilotlog.txt
[2025-10-12 22:56:02] -rw------- 1 boinc boinc        95 Oct 12 22:56 pilot_heartbeat.json
[2025-10-12 22:56:02] -rw------- 1 boinc boinc    703452 Oct 12 22:56 log.46676269._071831.job.log.1
[2025-10-12 22:56:02] -rw------- 1 boinc boinc       188 Oct 12 22:56 output.list
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:56 runtime_log
[2025-10-12 22:56:02] -rw------- 1 boinc boinc    983040 Oct 12 22:56 result.tar.gz
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc      8630 Oct 12 22:56 runtime_log.err
[2025-10-12 22:56:02] -rw------- 1 boinc boinc       660 Oct 12 22:56 OsxNDmwh3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuiiNDmAUH9tm.diag
[2025-10-12 22:56:02] -rw-r--r-- 1 boinc boinc     12495 Oct 12 22:56 stderr.txt
[2025-10-12 22:56:03] No HITS result produced
[2025-10-12 22:56:03]  *** Contents of shared directory: ***
[2025-10-12 22:56:03] total 216684
[2025-10-12 22:56:03] -rw-r--r-- 2 boinc boinc 220303957 Oct 12 21:36 ATLAS.root_0
[2025-10-12 22:56:03] -rw-r--r-- 2 boinc boinc    569679 Oct 12 21:36 input.tar.gz
[2025-10-12 22:56:03] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:36 start_atlas.sh
[2025-10-12 22:56:03] -rw------- 1 boinc boinc    983040 Oct 12 22:56 result.tar.gz
22:56:04 (3311090): run_atlas exited; CPU time 16560.359153
22:56:04 (3311090): called boinc_finish(0)

</stderr_txt>
]]>

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