Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:36:47 (337308): wrapper (7.7.26015): starting
03:36:47 (337308): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 03:36:47] Arguments: --nthreads 8
[2025-10-12 03:36:47] Threads: 8
[2025-10-12 03:36:47] Checking for CVMFS
[2025-10-12 03:36:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 03:36:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 03:36:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 03:36:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 03:36:48] 2.11.3.0 1870 31333 190140 151617 2 219 30089004 45568000 17969 130560 0 185617546 99.862 77720162 25591 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 03:36:48] CVMFS is ok
[2025-10-12 03:36:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 03:36:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 03:36:48] Further information can be found at the LHC@home message board.
[2025-10-12 03:36:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 03:36:48] Checking for apptainer binary...
[2025-10-12 03:36:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 03:36:48] Running /usr/bin/apptainer --version
[2025-10-12 03:36:48] apptainer version 1.4.1-1.el9
[2025-10-12 03:36:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 03:36:48] wns0015.triumf.lcg
[2025-10-12 03:36:48] apptainer works
[2025-10-12 03:36:49] Set ATHENA_PROC_NUMBER=8
[2025-10-12 03:36:49] Set ATHENA_CORE_NUMBER=8
[2025-10-12 03:36:49] Starting ATLAS job with PandaID=6837328890
[2025-10-12 03:36:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:42:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | wrong length of table data, x=[1760265528.0], y=[1650.0] (must be same and length>=4)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,179 | INFO     | ..............................
[2025-10-12 03:42:45] 2025-10-12 10:42:10,179 | INFO     | . Timing measurements:
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . get job = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . initial setup = 5 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . payload setup = 29 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . stage-in = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . payload execution = 68 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . stage-out = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | . log creation = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | ..............................
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837328890/pilotlog.txt
[2025-10-12 03:42:45] 2025-10-12 10:42:10,446 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 03:42:45] - Log from pilotlog.txt -
[2025-10-12 03:42:45] 2025-10-12 10:42:10,176 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837328890/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,177 | INFO     | extracted standard info from prmon json
[2025-10-12 03:42:45] 2025-10-12 10:42:10,177 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:42:45] 2025-10-12 10:42:10,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | wrong length of table data, x=[1760265528.0], y=[1650.0] (must be same and length>=4)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,179 | INFO     | ..............................
[2025-10-12 03:42:45] 2025-10-12 10:42:10,179 | INFO     | . Timing measurements:
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . get job = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . initial setup = 5 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . payload setup = 29 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . stage-in = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . payload execution = 68 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . stage-out = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | . log creation = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | ..............................
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837328890/pilotlog.txt
[2025-10-12 03:42:45] 2025-10-12 10:42:10,447 | WARNING  | 
[2025-10-12 03:42:45] [begin log extracts]
[2025-10-12 03:42:45] - Log from pilotlog.txt -
[2025-10-12 03:42:45] 2025-10-12 10:42:10,176 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837328890/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,177 | INFO     | extracted standard info from prmon json
[2025-10-12 03:42:45] 2025-10-12 10:42:10,177 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:42:45] 2025-10-12 10:42:10,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | WARNING  | wrong length of table data, x=[1760265528.0], y=[1650.0] (must be same and length>=4)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,178 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,179 | INFO     | ..............................
[2025-10-12 03:42:45] 2025-10-12 10:42:10,179 | INFO     | . Timing measurements:
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . get job = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . initial setup = 5 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . payload setup = 29 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . stage-in = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . payload execution = 68 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,192 | INFO     | . stage-out = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | . log creation = 0 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | ..............................
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 03:42:45] 2025-10-12 10:42:10,193 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837328890/pilotlog.txt
[2025-10-12 03:42:45] [end log extracts]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,447 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,448 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 03:42:45] 2025-10-12 10:42:10,674 | INFO     | 
[2025-10-12 03:42:45] 2025-10-12 10:42:10,674 | INFO     | job summary report
[2025-10-12 03:42:45] 2025-10-12 10:42:10,674 | INFO     | --------------------------------------------------
[2025-10-12 03:42:45] 2025-10-12 10:42:10,674 | INFO     | PanDA job id: 6837328890
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | task id: 46676269
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 03:39:32,856 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | pilot state: failed 
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | transexitcode: 65
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | exeerrorcode: 65
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | exitcode: 65
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | cpuconsumptiontime: 19 s
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | nevents: 0
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | neventsw: 0
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | pid: 347855
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | pgrp: 347855
[2025-10-12 03:42:45] 2025-10-12 10:42:10,675 | INFO     | corecount: 8
[2025-10-12 03:42:45] 2025-10-12 10:42:10,676 | INFO     | event service: False
[2025-10-12 03:42:45] 2025-10-12 10:42:10,676 | INFO     | sizes: {0: 2348681, 1: 2348880, 12: 2348880, 14: 2349170, 22: 2349198, 102: 2372522, 104: 2376814, 107: 2376842, 248: 2377008}
[2025-10-12 03:42:45] 2025-10-12 10:42:10,676 | INFO     | --------------------------------------------------
[2025-10-12 03:42:45] 2025-10-12 10:42:10,676 | INFO     | 
[2025-10-12 03:42:45] 2025-10-12 10:42:10,676 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,865 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:42:45] 2025-10-12 10:42:10,866 | INFO     | job 6837328890 has completed (purged errors)
[2025-10-12 03:42:45] 2025-10-12 10:42:10,866 | INFO     | overall cleanup function is called
[2025-10-12 03:42:45] 2025-10-12 10:42:11,888 | INFO     | --- collectZombieJob: --- 10, [347855]
[2025-10-12 03:42:45] 2025-10-12 10:42:11,888 | INFO     | zombie collector waiting for pid 347855
[2025-10-12 03:42:45] 2025-10-12 10:42:11,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:42:45] 2025-10-12 10:42:11,889 | INFO     | collected zombie processes
[2025-10-12 03:42:45] 2025-10-12 10:42:11,889 | INFO     | will attempt to kill all subprocesses of pid=347855
[2025-10-12 03:42:45] 2025-10-12 10:42:12,414 | INFO     | process IDs to be killed: [347855] (in reverse order)
[2025-10-12 03:42:45] 2025-10-12 10:42:12,488 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:42:45] 2025-10-12 10:42:12,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:42:45] 2025-10-12 10:42:12,500 | INFO     | did not find any defunct processes belonging to 347855
[2025-10-12 03:42:45] 2025-10-12 10:42:12,510 | INFO     | did not find any defunct processes belonging to 347855
[2025-10-12 03:42:45] 2025-10-12 10:42:12,510 | INFO     | ready for new job
[2025-10-12 03:42:45] 2025-10-12 10:42:12,510 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:42:45] 2025-10-12 10:42:12,513 | INFO     | ***************************************
[2025-10-12 03:42:45] 2025-10-12 10:42:12,513 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:42:45] 2025-10-12 10:42:12,513 | INFO     | ***************************************
[2025-10-12 03:42:45] 2025-10-12 10:42:12,514 | INFO     | 
[2025-10-12 03:42:45] 2025-10-12 10:42:12,515 | INFO     | architecture information:
[2025-10-12 03:42:45] 2025-10-12 10:42:12,516 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:42:45] 2025-10-12 10:42:12,565 | INFO     | cat /etc/os-release:
[2025-10-12 03:42:45] NAME="CentOS Linux"
[2025-10-12 03:42:45] VERSION="7 (Core)"
[2025-10-12 03:42:45] ID="centos"
[2025-10-12 03:42:45] ID_LIKE="rhel fedora"
[2025-10-12 03:42:45] VERSION_ID="7"
[2025-10-12 03:42:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:42:45] ANSI_COLOR="0;31"
[2025-10-12 03:42:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:42:45] HOME_URL="https://www.centos.org/"
[2025-10-12 03:42:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:42:45] 
[2025-10-12 03:42:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:42:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:42:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:42:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:42:45] 
[2025-10-12 03:42:45] 2025-10-12 10:42:12,566 | INFO     | ***************************************
[2025-10-12 03:42:45] 2025-10-12 10:42:13,069 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 03:42:45] 2025-10-12 10:42:13,232 | INFO     | sufficient remaining disk space (1158876758016 B)
[2025-10-12 03:42:45] 2025-10-12 10:42:13,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:42:45] 2025-10-12 10:42:13,232 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:42:45] 2025-10-12 10:42:13,232 | INFO     | update_server=False
[2025-10-12 03:42:45] 2025-10-12 10:42:13,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:42:45] 2025-10-12 10:42:13,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:42:45] 2025-10-12 10:42:13,595 | INFO     | all data control threads have been joined
[2025-10-12 03:42:45] 2025-10-12 10:42:14,144 | INFO     | all payload control threads have been joined
[2025-10-12 03:42:45] 2025-10-12 10:42:14,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:42:45] 2025-10-12 10:42:14,167 | INFO     | aborting loop
[2025-10-12 03:42:45] 2025-10-12 10:42:14,238 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:14,409 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:14,412 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:14,451 | INFO     | all job control threads have been joined
[2025-10-12 03:42:45] 2025-10-12 10:42:14,501 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:14,601 | INFO     | [data] control thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:14,658 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:14,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,150 | INFO     | [payload] control thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,176 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,257 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,457 | INFO     | [job] control thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,663 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,699 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:42:45] 2025-10-12 10:42:15,718 | INFO     | [job] validate thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,753 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:15,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:42:45] 2025-10-12 10:42:16,710 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:19,899 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:42:45] 2025-10-12 10:42:22,927 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:42:45] 2025-10-12 10:42:24,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911068030784)>', '<ExcThread(monitor, started 139910304495360)>']
[2025-10-12 03:42:45] 2025-10-12 10:42:29,328 | INFO     | all workflow threads have been joined
[2025-10-12 03:42:45] 2025-10-12 10:42:29,328 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:42:45] 2025-10-12 10:42:29,329 | INFO     | traces error code: 0
[2025-10-12 03:42:45] 2025-10-12 10:42:29,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:42:45] 2025-10-12 10:42:43,189 | INFO     | PID=341083 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 03:42:45] 2025-10-12 10:42:43,189 | INFO     | .. there are 33 such processes running
[2025-10-12 03:42:45] 2025-10-12 10:42:43,191 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:42:45] 2025-10-12 10:42:43,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:42:45] 2025-10-12 10:42:43,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:42:45] 2025-10-12 10:42:43,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:42:45] 2025-10-12 10:42:43,192 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 03:42:45] 2025-10-12 10:42:43,192 | INFO     | [monitor] control thread has ended
[2025-10-12 03:42:45] 2025-10-12 10:42:43,700 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:42:45] 2025-10-12 10:42:43,717 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:42:45] 2025-10-12 10:42:43,737 [wrapper] pilotpid: 341083
[2025-10-12 03:42:45] 2025-10-12 10:42:43,757 [wrapper] Pilot exit status: 0
[2025-10-12 03:42:45] 2025-10-12 10:42:43,888 [wrapper] pandaids: 6837328890
[2025-10-12 03:42:45] 2025-10-12 10:42:44,288 [wrapper] cleanup supervisor_pilot  341089 341084
[2025-10-12 03:42:45] 2025-10-12 10:42:44,311 [wrapper] Test setup, not cleaning
[2025-10-12 03:42:45] 2025-10-12 10:42:44,352 [wrapper] apfmon messages muted
[2025-10-12 03:42:45] 2025-10-12 10:42:44,390 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:42:45] 2025-10-12 10:42:44,450 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:42:45]  *** Error codes and diagnostics ***
[2025-10-12 03:42:45]     "exeErrorCode": 65,
[2025-10-12 03:42:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 03:42:45]     "pilotErrorCode": 1305,
[2025-10-12 03:42:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 03:42:45]  *** Listing of results directory ***
[2025-10-12 03:42:45] total 217540
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc      5112 Oct  9 03:51 queuedata.json
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc    557409 Oct  9 03:52 pilot3.tar.gz
[2025-10-12 03:42:45] -rwx------. 1 boinc boinc     36292 Oct  9 03:54 runpilot2-wrapper.sh
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc       100 Oct 12 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:42:45] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 03:36 run_atlas
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc       105 Oct 12 03:36 job.xml
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc      6444 Oct 12 03:36 init_data.xml
[2025-10-12 03:42:45] -rw-r--r--. 2 boinc boinc 218616742 Oct 12 03:36 EVNT.46676267._000580.pool.root.1
[2025-10-12 03:42:45] -rw-r--r--. 2 boinc boinc     15120 Oct 12 03:36 start_atlas.sh
[2025-10-12 03:42:45] drwxrwx--x. 2 boinc boinc      4096 Oct 12 03:36 shared
[2025-10-12 03:42:45] -rw-r--r--. 2 boinc boinc    569678 Oct 12 03:36 input.tar.gz
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc         0 Oct 12 03:36 boinc_lockfile
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc      2549 Oct 12 03:36 pandaJob.out
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc    975520 Oct 12 03:37 agis_schedconf.cvmfs.json
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc   1560580 Oct 12 03:37 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:42:45] drwx------. 5 boinc boinc      4096 Oct 12 03:37 pilot3
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc       524 Oct 12 03:39 boinc_task_state.xml
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc       949 Oct 12 03:39 memory_monitor_summary.json
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc     22388 Oct 12 03:39 log.46676269._014136.job.log.tgz.1
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc      8377 Oct 12 03:42 heartbeat.json
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc        23 Oct 12 03:42 wrapper_checkpoint.txt
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc      8192 Oct 12 03:42 boinc_mmap_file
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc        95 Oct 12 03:42 pilot_heartbeat.json
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc       892 Oct 12 03:42 pilotlog.txt
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc     96640 Oct 12 03:42 log.46676269._014136.job.log.1
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc       188 Oct 12 03:42 output.list
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc       620 Oct 12 03:42 runtime_log
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc    143360 Oct 12 03:42 result.tar.gz
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc      8526 Oct 12 03:42 runtime_log.err
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc       645 Oct 12 03:42 KjRMDmeT3Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1ZNMDmqb2gFo.diag
[2025-10-12 03:42:45] -rw-r--r--. 1 boinc boinc     21780 Oct 12 03:42 stderr.txt
[2025-10-12 03:42:45] No HITS result produced
[2025-10-12 03:42:45]  *** Contents of shared directory: ***
[2025-10-12 03:42:45] total 214216
[2025-10-12 03:42:45] -rw-r--r--. 2 boinc boinc 218616742 Oct 12 03:36 ATLAS.root_0
[2025-10-12 03:42:45] -rw-r--r--. 2 boinc boinc     15120 Oct 12 03:36 start_atlas.sh
[2025-10-12 03:42:45] -rw-r--r--. 2 boinc boinc    569678 Oct 12 03:36 input.tar.gz
[2025-10-12 03:42:45] -rw-------. 1 boinc boinc    143360 Oct 12 03:42 result.tar.gz
03:42:46 (337308): run_atlas exited; CPU time 30.190839
03:42:46 (337308): called boinc_finish(0)

</stderr_txt>
]]>

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