Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:21:04 (12432): wrapper (7.7.26015): starting
06:21:04 (12432): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 06:21:04] Arguments: --nthreads 12
[2025-10-12 06:21:04] Threads: 12
[2025-10-12 06:21:04] Checking for CVMFS
[2025-10-12 06:21:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:21:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:21:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:21:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:21:05] 2.11.2.0 14820 78099 86712 151617 3 56 14763272 20275200 1 130560 0 48622238 99.991 2492372 45559 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 06:21:05] CVMFS is ok
[2025-10-12 06:21:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:21:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:21:05] Further information can be found at the LHC@home message board.
[2025-10-12 06:21:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:21:05] Checking for apptainer binary...
[2025-10-12 06:21:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:21:05] Running /usr/bin/apptainer --version
[2025-10-12 06:21:05] apptainer version 1.3.2-1.el7
[2025-10-12 06:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:21:06] c-205-27.aglt2.org
[2025-10-12 06:21:06] apptainer works
[2025-10-12 06:21:06] Set ATHENA_PROC_NUMBER=12
[2025-10-12 06:21:06] Set ATHENA_CORE_NUMBER=12
[2025-10-12 06:21:06] Starting ATLAS job with PandaID=6839387432
[2025-10-12 06:21:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:30:35]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:30:35] 2025-10-12 11:29:51,370 | WARNING  | process 22604 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 07:30:35] 2025-10-12 11:29:51,370 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839387432/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,371 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839387432/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,372 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 07:30:35] 2025-10-12 11:29:51,372 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 07:30:35] 2025-10-12 11:29:51,372 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4559869 B
[2025-10-12 07:30:35] 2025-10-12 11:29:51,372 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15787 B
[2025-10-12 07:30:35] 2025-10-12 11:29:51,372 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 07:30:35] 2025-10-12 11:29:51,390 | INFO     | sufficient remaining disk space (29367468032 B)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,391 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,392 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6839387432: 4855948 B (within 2537553920 B limit)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,392 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6839387432/HITS.46676269._071323.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,392 | INFO     | total size of present files: 0 B (workdir size: 4855948 B)
[2025-10-12 07:30:35] 2025-10-12 11:29:51,392 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6839387432/HITS.46676269._071323.pool.root.1 since it does not exist
[2025-10-12 07:30:35] 2025-10-12 11:29:51,482 | INFO     | number of running child processes to parent process 22604: 1
[2025-10-12 07:30:35] 2025-10-12 11:29:51,482 | INFO     | maximum number of monitored processes: 6
[2025-10-12 07:30:35] 2025-10-12 11:29:52,545 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 07:30:35] 2025-10-12 11:29:53,126 | INFO     | time since job start (4112s) is within the limit (172800.0s)
[2025-10-12 07:30:35] 2025-10-12 11:29:53,984 | INFO     | monitor loop #305: job 0:6839387432 is in state 'finished'
[2025-10-12 07:30:35] 2025-10-12 11:29:53,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:30:35] 2025-10-12 11:29:55,132 | INFO     | time since job start (4114s) is within the limit (172800.0s)
[2025-10-12 07:30:35] 2025-10-12 11:29:55,459 | INFO     | job 6839387432 has state=finished
[2025-10-12 07:30:35] 2025-10-12 11:29:55,459 | INFO     | preparing for final server update for job 6839387432 in state='finished'
[2025-10-12 07:30:35] 2025-10-12 11:29:55,460 | INFO     | this job has now completed (state=finished)
[2025-10-12 07:30:35] 2025-10-12 11:29:55,460 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 07:30:35] 2025-10-12 11:29:55,460 | INFO     | log transfer has been attempted: DONE
[2025-10-12 07:30:35] 2025-10-12 11:29:55,460 | INFO     | job 6839387432 has finished - writing final server update
[2025-10-12 07:30:35] 2025-10-12 11:29:55,461 | INFO     | total number of processed events: 400 (read)
[2025-10-12 07:30:35] 2025-10-12 11:29:55,461 | INFO     | executing command: lscpu
[2025-10-12 07:30:35] 2025-10-12 11:29:55,486 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 07:30:35] 2025-10-12 11:29:56,487 | INFO     | monitor loop #306: job 0:6839387432 is in state 'finished'
[2025-10-12 07:30:35] 2025-10-12 11:29:56,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:30:35] 2025-10-12 11:29:57,134 | INFO     | time since job start (4116s) is within the limit (172800.0s)
[2025-10-12 07:30:35] 2025-10-12 11:29:58,990 | INFO     | monitor loop #307: job 0:6839387432 is in state 'finished'
[2025-10-12 07:30:35] 2025-10-12 11:29:58,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:30:35] 2025-10-12 11:29:59,140 | INFO     | time since job start (4118s) is within the limit (172800.0s)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,674 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 07:30:35] 2025-10-12 11:30:00,678 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 07:30:35] 2025-10-12 11:30:00,679 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839387432/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,680 | INFO     | extracted standard info from prmon json
[2025-10-12 07:30:35] 2025-10-12 11:30:00,680 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:30:35] 2025-10-12 11:30:00,680 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:30:35] 2025-10-12 11:30:00,680 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:30:35] 2025-10-12 11:30:00,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:30:35] 2025-10-12 11:30:00,682 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:30:35] 2025-10-12 11:30:00,682 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 07:30:35] 2025-10-12 11:30:00,682 | INFO     | sum of deviations: -6514268141.000001
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | mean x: 1760266614.5
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | mean y: 2853171.8333333335
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | -- intersect: 171253634731.36325
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | intersect: 171253634731.36325
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | chi2: 0.05495760265375719
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | -- intersect: 171253634731.36325
[2025-10-12 07:30:35] 2025-10-12 11:30:00,683 | INFO     | current memory leak: -97.29 B/s (using 60 data points, chi2=0.05)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | ..............................
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | . Timing measurements:
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | . get job = 0 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | . initial setup = 2 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | . payload setup = 7 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | . stage-in = 0 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,684 | INFO     | . payload execution = 4080 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,685 | INFO     | . stage-out = 0 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,685 | INFO     | . log creation = 0 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,685 | INFO     | ..............................
[2025-10-12 07:30:35] 2025-10-12 11:30:00,769 | INFO     | 
[2025-10-12 07:30:35] 2025-10-12 11:30:00,769 | INFO     | job summary report
[2025-10-12 07:30:35] 2025-10-12 11:30:00,769 | INFO     | --------------------------------------------------
[2025-10-12 07:30:35] 2025-10-12 11:30:00,769 | INFO     | PanDA job id: 6839387432
[2025-10-12 07:30:35] 2025-10-12 11:30:00,770 | INFO     | task id: 46676269
[2025-10-12 07:30:35] 2025-10-12 11:30:00,770 | INFO     | errors: (none)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:30:35] 2025-10-12 11:30:00,770 | INFO     | pilot state: finished 
[2025-10-12 07:30:35] 2025-10-12 11:30:00,770 | INFO     | transexitcode: 0
[2025-10-12 07:30:35] 2025-10-12 11:30:00,770 | INFO     | exeerrorcode: 0
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | exeerrordiag: 
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | exitcode: 0
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | exitmsg: OK
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | cpuconsumptiontime: 44961 s
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | nevents: 400
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | neventsw: 0
[2025-10-12 07:30:35] 2025-10-12 11:30:00,771 | INFO     | pid: 22604
[2025-10-12 07:30:35] 2025-10-12 11:30:00,772 | INFO     | pgrp: 22604
[2025-10-12 07:30:35] 2025-10-12 11:30:00,772 | INFO     | corecount: 12
[2025-10-12 07:30:35] 2025-10-12 11:30:00,772 | INFO     | event service: False
[2025-10-12 07:30:35] 2025-10-12 11:30:00,772 | INFO     | sizes: {0: 2348857, 1: 2348885, 6: 2349147, 11: 2349175, 4091: 2375044, 4092: 2384042, 4095: 2384254, 4103: 2384448}
[2025-10-12 07:30:35] 2025-10-12 11:30:00,772 | INFO     | --------------------------------------------------
[2025-10-12 07:30:35] 2025-10-12 11:30:00,772 | INFO     | 
[2025-10-12 07:30:35] 2025-10-12 11:30:00,773 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 07:30:35] 2025-10-12 11:30:00,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,800 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,800 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,800 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,800 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:30:35] 2025-10-12 11:30:00,801 | INFO     | job 6839387432 has completed (purged errors)
[2025-10-12 07:30:35] 2025-10-12 11:30:00,801 | INFO     | overall cleanup function is called
[2025-10-12 07:30:35] 2025-10-12 11:30:01,809 | INFO     | --- collectZombieJob: --- 10, [22604]
[2025-10-12 07:30:35] 2025-10-12 11:30:01,810 | INFO     | zombie collector waiting for pid 22604
[2025-10-12 07:30:35] 2025-10-12 11:30:01,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:30:35] 2025-10-12 11:30:01,810 | INFO     | collected zombie processes
[2025-10-12 07:30:35] 2025-10-12 11:30:01,810 | INFO     | will attempt to kill all subprocesses of pid=22604
[2025-10-12 07:30:35] 2025-10-12 11:30:01,899 | INFO     | process IDs to be killed: [22604] (in reverse order)
[2025-10-12 07:30:35] 2025-10-12 11:30:01,953 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:30:35] 2025-10-12 11:30:01,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:30:35] 2025-10-12 11:30:01,957 | INFO     | did not find any defunct processes belonging to 22604
[2025-10-12 07:30:35] 2025-10-12 11:30:01,959 | INFO     | did not find any defunct processes belonging to 22604
[2025-10-12 07:30:35] 2025-10-12 11:30:01,960 | INFO     | ready for new job
[2025-10-12 07:30:35] 2025-10-12 11:30:01,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:30:35] 2025-10-12 11:30:01,961 | INFO     | ***************************************
[2025-10-12 07:30:35] 2025-10-12 11:30:01,961 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:30:35] 2025-10-12 11:30:01,961 | INFO     | ***************************************
[2025-10-12 07:30:35] 2025-10-12 11:30:01,961 | INFO     | 
[2025-10-12 07:30:35] 2025-10-12 11:30:01,962 | INFO     | architecture information:
[2025-10-12 07:30:35] 2025-10-12 11:30:01,962 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:30:35] 2025-10-12 11:30:01,976 | INFO     | cat /etc/os-release:
[2025-10-12 07:30:35] NAME="CentOS Linux"
[2025-10-12 07:30:35] VERSION="7 (Core)"
[2025-10-12 07:30:35] ID="centos"
[2025-10-12 07:30:35] ID_LIKE="rhel fedora"
[2025-10-12 07:30:35] VERSION_ID="7"
[2025-10-12 07:30:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:30:35] ANSI_COLOR="0;31"
[2025-10-12 07:30:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:30:35] HOME_URL="https://www.centos.org/"
[2025-10-12 07:30:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:30:35] 
[2025-10-12 07:30:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:30:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:30:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:30:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:30:35] 
[2025-10-12 07:30:35] 2025-10-12 11:30:01,976 | INFO     | ***************************************
[2025-10-12 07:30:35] 2025-10-12 11:30:02,479 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 07:30:35] 2025-10-12 11:30:02,496 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-10-12 07:30:35] 2025-10-12 11:30:02,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:30:35] 2025-10-12 11:30:02,496 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:30:35] 2025-10-12 11:30:02,496 | INFO     | update_server=False
[2025-10-12 07:30:35] 2025-10-12 11:30:02,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:30:35] 2025-10-12 11:30:02,497 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:30:35] 2025-10-12 11:30:02,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:30:35] 2025-10-12 11:30:02,497 | INFO     | aborting loop
[2025-10-12 07:30:35] 2025-10-12 11:30:02,762 | INFO     | all data control threads have been joined
[2025-10-12 07:30:35] 2025-10-12 11:30:02,861 | INFO     | all job control threads have been joined
[2025-10-12 07:30:35] 2025-10-12 11:30:02,970 | INFO     | all payload control threads have been joined
[2025-10-12 07:30:35] 2025-10-12 11:30:03,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:30:35] 2025-10-12 11:30:03,137 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:30:35] 2025-10-12 11:30:03,499 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,502 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,502 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,543 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,710 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,767 | INFO     | [data] control thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,779 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,866 | INFO     | [job] control thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:03,976 | INFO     | [payload] control thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:04,080 | INFO     | [job] validate thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:04,347 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:04,584 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:04,695 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:05,131 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:07,143 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:13,285 | INFO     | job.realtimelogging is not enabled
[2025-10-12 07:30:35] 2025-10-12 11:30:14,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:30:35] 2025-10-12 11:30:27,710 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:30:35] 2025-10-12 11:30:29,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139792606426944)>', '<ExcThread(monitor, started 139791513413376)>']
[2025-10-12 07:30:35] 2025-10-12 11:30:32,336 | INFO     | PID=16236 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 07:30:35] 2025-10-12 11:30:32,337 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:30:35] 2025-10-12 11:30:32,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:30:35] 2025-10-12 11:30:32,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:30:35] 2025-10-12 11:30:32,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:30:35] 2025-10-12 11:30:32,337 | INFO     | [monitor] control thread has ended
[2025-10-12 07:30:35] 2025-10-12 11:30:34,845 | INFO     | all workflow threads have been joined
[2025-10-12 07:30:35] 2025-10-12 11:30:34,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:30:35] 2025-10-12 11:30:34,856 | INFO     | traces error code: 0
[2025-10-12 07:30:35] 2025-10-12 11:30:34,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:30:35] 2025-10-12 11:30:34,953 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:30:35] 2025-10-12 11:30:34,957 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:30:35] 2025-10-12 11:30:34,961 [wrapper] pilotpid: 16236
[2025-10-12 07:30:35] 2025-10-12 11:30:34,965 [wrapper] Pilot exit status: 0
[2025-10-12 07:30:35] 2025-10-12 11:30:34,980 [wrapper] pandaids: 6839387432
[2025-10-12 07:30:35] 2025-10-12 11:30:35,021 [wrapper] cleanup supervisor_pilot   534 16237
[2025-10-12 07:30:35] 2025-10-12 11:30:35,025 [wrapper] Test setup, not cleaning
[2025-10-12 07:30:35] 2025-10-12 11:30:35,029 [wrapper] apfmon messages muted
[2025-10-12 07:30:35] 2025-10-12 11:30:35,033 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:30:35] 2025-10-12 11:30:35,037 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:30:35]  *** Error codes and diagnostics ***
[2025-10-12 07:30:35]     "exeErrorCode": 0,
[2025-10-12 07:30:35]     "exeErrorDiag": "",
[2025-10-12 07:30:35]     "pilotErrorCode": 0,
[2025-10-12 07:30:35]     "pilotErrorDiag": "",
[2025-10-12 07:30:35]  *** Listing of results directory ***
[2025-10-12 07:30:35] total 407004
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:11 pilot3.tar.gz
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:34 queuedata.json
[2025-10-12 07:30:35] -rwx------ 1 boincer umatlas     36292 Oct 12 00:35 runpilot2-wrapper.sh
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas       100 Oct 12 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:30:35] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 06:21 run_atlas
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas       105 Oct 12 06:21 job.xml
[2025-10-12 07:30:35] -rw-r--r-- 2 boincer umatlas 219188485 Oct 12 06:21 EVNT.46676267._004300.pool.root.1
[2025-10-12 07:30:35] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 06:21 start_atlas.sh
[2025-10-12 07:30:35] drwxrwx--x 2 boincer umatlas      4096 Oct 12 06:21 shared
[2025-10-12 07:30:35] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 06:21 input.tar.gz
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas         0 Oct 12 06:21 boinc_lockfile
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 06:21 pandaJob.out
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas    975520 Oct 12 06:21 agis_schedconf.cvmfs.json
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas   1560580 Oct 12 06:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:30:35] drwx------ 5 boincer umatlas      4096 Oct 12 06:21 pilot3
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 07:28 init_data.xml
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas 191690931 Oct 12 07:29 HITS.46676269._071323.pool.root.1
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas       529 Oct 12 07:29 boinc_task_state.xml
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas      1049 Oct 12 07:29 memory_monitor_summary.json
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas    390698 Oct 12 07:29 log.46676269._071323.job.log.tgz.1
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas      7858 Oct 12 07:30 heartbeat.json
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 07:30 boinc_mmap_file
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas        27 Oct 12 07:30 wrapper_checkpoint.txt
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas        95 Oct 12 07:30 pilot_heartbeat.json
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas      4818 Oct 12 07:30 pilotlog.txt
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas    602310 Oct 12 07:30 log.46676269._071323.job.log.1
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas       357 Oct 12 07:30 output.list
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas       620 Oct 12 07:30 runtime_log
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas   1013760 Oct 12 07:30 result.tar.gz
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas       659 Oct 12 07:30 xYSLDmny2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrdiNDmrENYUm.diag
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 07:30 runtime_log.err
[2025-10-12 07:30:35] -rw-r--r-- 1 boincer umatlas     22422 Oct 12 07:30 stderr.txt
[2025-10-12 07:30:35] HITS file was successfully produced:
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas 191690931 Oct 12 07:29 shared/HITS.pool.root.1
[2025-10-12 07:30:35]  *** Contents of shared directory: ***
[2025-10-12 07:30:35] total 402824
[2025-10-12 07:30:35] -rw-r--r-- 2 boincer umatlas 219188485 Oct 12 06:21 ATLAS.root_0
[2025-10-12 07:30:35] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 06:21 start_atlas.sh
[2025-10-12 07:30:35] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 06:21 input.tar.gz
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas 191690931 Oct 12 07:29 HITS.pool.root.1
[2025-10-12 07:30:35] -rw------- 1 boincer umatlas   1013760 Oct 12 07:30 result.tar.gz
07:30:36 (12432): run_atlas exited; CPU time 44930.396137
07:30:36 (12432): called boinc_finish(0)

</stderr_txt>
]]>

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