Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:57:19 (3511922): wrapper (7.7.26015): starting
21:57:19 (3511922): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 21:57:19] Arguments: --nthreads 4
[2025-10-12 21:57:19] Threads: 4
[2025-10-12 21:57:19] Checking for CVMFS
[2025-10-12 21:57:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:57:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:57:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:57:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:57:19] 2.9.2.0 1879657 4679 97240 151635 3 57 26746771 36864001 0 130560 0 4255780 99.992 162948 873 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:57:19] CVMFS is ok
[2025-10-12 21:57:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:57:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:57:19] Further information can be found at the LHC@home message board.
[2025-10-12 21:57:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:57:19] Checking for apptainer binary...
[2025-10-12 21:57:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:57:19] Running /usr/bin/apptainer --version
[2025-10-12 21:57:19] apptainer version 1.4.1-1.1
[2025-10-12 21:57:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:57:20] iaxoA393
[2025-10-12 21:57:20] apptainer works
[2025-10-12 21:57:20] Set ATHENA_PROC_NUMBER=4
[2025-10-12 21:57:20] Set ATHENA_CORE_NUMBER=4
[2025-10-12 21:57:20] Starting ATLAS job with PandaID=6838989636
[2025-10-12 21:57:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:06:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:06:37] 2025-10-12 21:06:00,448 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:06:37] 2025-10-12 21:06:00,448 | INFO     | job 6838989636 has completed (purged errors)
[2025-10-12 23:06:37] 2025-10-12 21:06:00,448 | INFO     | overall cleanup function is called
[2025-10-12 23:06:37] 2025-10-12 21:06:00,460 | INFO     | PID=3515700 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:06:37] 2025-10-12 21:06:01,455 | INFO     | --- collectZombieJob: --- 10, [3522256]
[2025-10-12 23:06:37] 2025-10-12 21:06:01,456 | INFO     | zombie collector waiting for pid 3522256
[2025-10-12 23:06:37] 2025-10-12 21:06:01,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:06:37] 2025-10-12 21:06:01,456 | INFO     | collected zombie processes
[2025-10-12 23:06:37] 2025-10-12 21:06:01,456 | INFO     | will attempt to kill all subprocesses of pid=3522256
[2025-10-12 23:06:37] 2025-10-12 21:06:01,500 | INFO     | process IDs to be killed: [3522256] (in reverse order)
[2025-10-12 23:06:37] 2025-10-12 21:06:01,530 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:06:37] 2025-10-12 21:06:01,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:06:37] 2025-10-12 21:06:01,532 | INFO     | did not find any defunct processes belonging to 3522256
[2025-10-12 23:06:37] 2025-10-12 21:06:01,533 | INFO     | did not find any defunct processes belonging to 3522256
[2025-10-12 23:06:37] 2025-10-12 21:06:01,533 | INFO     | ready for new job
[2025-10-12 23:06:37] 2025-10-12 21:06:01,533 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:06:37] 2025-10-12 21:06:01,534 | INFO     | ***************************************
[2025-10-12 23:06:37] 2025-10-12 21:06:01,534 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:06:37] 2025-10-12 21:06:01,534 | INFO     | ***************************************
[2025-10-12 23:06:37] 2025-10-12 21:06:01,534 | INFO     | 
[2025-10-12 23:06:37] 2025-10-12 21:06:01,535 | INFO     | architecture information:
[2025-10-12 23:06:37] 2025-10-12 21:06:01,535 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:06:37] 2025-10-12 21:06:01,548 | INFO     | cat /etc/os-release:
[2025-10-12 23:06:37] NAME="CentOS Linux"
[2025-10-12 23:06:37] VERSION="7 (Core)"
[2025-10-12 23:06:37] ID="centos"
[2025-10-12 23:06:37] ID_LIKE="rhel fedora"
[2025-10-12 23:06:37] VERSION_ID="7"
[2025-10-12 23:06:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:06:37] ANSI_COLOR="0;31"
[2025-10-12 23:06:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:06:37] HOME_URL="https://www.centos.org/"
[2025-10-12 23:06:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:06:37] 
[2025-10-12 23:06:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:06:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:06:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:06:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:06:37] 
[2025-10-12 23:06:37] 2025-10-12 21:06:01,548 | INFO     | ***************************************
[2025-10-12 23:06:37] 2025-10-12 21:06:02,051 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:06:37] 2025-10-12 21:06:02,067 | INFO     | sufficient remaining disk space (332928122880 B)
[2025-10-12 23:06:37] 2025-10-12 21:06:02,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | INFO     | update_server=False
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:06:37] 2025-10-12 21:06:02,068 | INFO     | aborting loop
[2025-10-12 23:06:37] 2025-10-12 21:06:02,311 | INFO     | all data control threads have been joined
[2025-10-12 23:06:37] 2025-10-12 21:06:02,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:06:37] 2025-10-12 21:06:03,027 | INFO     | all payload control threads have been joined
[2025-10-12 23:06:37] 2025-10-12 21:06:03,073 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,074 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,074 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,094 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,162 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,203 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,317 | INFO     | [data] control thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,332 | INFO     | all job control threads have been joined
[2025-10-12 23:06:37] 2025-10-12 21:06:03,388 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,395 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:03,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:04,032 | INFO     | [payload] control thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:04,074 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:04,162 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:04,338 | INFO     | [job] control thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:04,502 | INFO     | [job] validate thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:06,353 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:06:37] 2025-10-12 21:06:31,534 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:06:37] 2025-10-12 21:06:32,201 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757687920448)>', '<ExcThread(monitor, started 139756591625984)>']
[2025-10-12 23:06:37] 2025-10-12 21:06:32,578 | INFO     | PID=3515700 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:06:37] 2025-10-12 21:06:32,578 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:06:37] 2025-10-12 21:06:32,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:06:37] 2025-10-12 21:06:32,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:06:37] 2025-10-12 21:06:32,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:06:37] 2025-10-12 21:06:32,579 | INFO     | [monitor] control thread has ended
[2025-10-12 23:06:37] 2025-10-12 21:06:37,211 | INFO     | all workflow threads have been joined
[2025-10-12 23:06:37] 2025-10-12 21:06:37,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:06:37] 2025-10-12 21:06:37,211 | INFO     | traces error code: 0
[2025-10-12 23:06:37] 2025-10-12 21:06:37,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:06:37] 2025-10-12 21:06:37,278 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:06:37] 2025-10-12 21:06:37,281 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:06:37] 2025-10-12 21:06:37,286 [wrapper] pilotpid: 3515700
[2025-10-12 23:06:37] 2025-10-12 21:06:37,289 [wrapper] Pilot exit status: 0
[2025-10-12 23:06:37] 2025-10-12 21:06:37,299 [wrapper] pandaids: 6838989636
[2025-10-12 23:06:37] 2025-10-12 21:06:37,319 [wrapper] cleanup supervisor_pilot 3532621 3515701
[2025-10-12 23:06:37] 2025-10-12 21:06:37,323 [wrapper] Test setup, not cleaning
[2025-10-12 23:06:37] 2025-10-12 21:06:37,326 [wrapper] apfmon messages muted
[2025-10-12 23:06:37] 2025-10-12 21:06:37,329 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:06:37] 2025-10-12 21:06:37,333 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:06:37]  *** Error codes and diagnostics ***
[2025-10-12 23:06:37]     "exeErrorCode": 0,
[2025-10-12 23:06:37]     "exeErrorDiag": "",
[2025-10-12 23:06:37]     "pilotErrorCode": 0,
[2025-10-12 23:06:37]     "pilotErrorDiag": "",
[2025-10-12 23:06:37]  *** Listing of results directory ***
[2025-10-12 23:06:37] total 406140
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc    557409 Oct 11 23:39 pilot3.tar.gz
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc      5112 Oct 11 23:54 queuedata.json
[2025-10-12 23:06:37] -rwx------ 1 boinc boinc     36292 Oct 11 23:55 runpilot2-wrapper.sh
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:06:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:57 run_atlas
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:57 job.xml
[2025-10-12 23:06:37] -rw-r--r-- 2 boinc boinc 220132895 Oct 12 21:57 EVNT.46676267._002633.pool.root.1
[2025-10-12 23:06:37] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:57 shared
[2025-10-12 23:06:37] -rw-r--r-- 2 boinc boinc    569681 Oct 12 21:57 input.tar.gz
[2025-10-12 23:06:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:57 start_atlas.sh
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:57 boinc_setup_complete
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc      6372 Oct 12 21:57 init_data.xml
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:57 boinc_lockfile
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:57 pandaJob.out
[2025-10-12 23:06:37] -rw------- 1 boinc boinc    975536 Oct 12 21:57 agis_schedconf.cvmfs.json
[2025-10-12 23:06:37] -rw------- 1 boinc boinc   1560580 Oct 12 21:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:06:37] drwx------ 5 boinc boinc      4096 Oct 12 21:57 pilot3
[2025-10-12 23:06:37] -rw------- 1 boinc boinc 190117982 Oct 12 23:05 HITS.46676269._065544.pool.root.1
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:05 boinc_task_state.xml
[2025-10-12 23:06:37] -rw------- 1 boinc boinc        95 Oct 12 23:05 pilot_heartbeat.json
[2025-10-12 23:06:37] -rw------- 1 boinc boinc      1025 Oct 12 23:05 memory_monitor_summary.json
[2025-10-12 23:06:37] -rw------- 1 boinc boinc    254321 Oct 12 23:05 log.46676269._065544.job.log.tgz.1
[2025-10-12 23:06:37] -rw------- 1 boinc boinc      7772 Oct 12 23:06 heartbeat.json
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:06 boinc_mmap_file
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:06 wrapper_checkpoint.txt
[2025-10-12 23:06:37] -rw------- 1 boinc boinc      4752 Oct 12 23:06 pilotlog.txt
[2025-10-12 23:06:37] -rw------- 1 boinc boinc    614367 Oct 12 23:06 log.46676269._065544.job.log.1
[2025-10-12 23:06:37] -rw------- 1 boinc boinc       357 Oct 12 23:06 output.list
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:06 runtime_log
[2025-10-12 23:06:37] -rw------- 1 boinc boinc    890880 Oct 12 23:06 result.tar.gz
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc      8787 Oct 12 23:06 runtime_log.err
[2025-10-12 23:06:37] -rw------- 1 boinc boinc       660 Oct 12 23:06 VMLKDmijwR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfihNDmgoLrGn.diag
[2025-10-12 23:06:37] -rw-r--r-- 1 boinc boinc     11132 Oct 12 23:06 stderr.txt
[2025-10-12 23:06:37] HITS file was successfully produced:
[2025-10-12 23:06:37] -rw------- 1 boinc boinc 190117982 Oct 12 23:05 shared/HITS.pool.root.1
[2025-10-12 23:06:37]  *** Contents of shared directory: ***
[2025-10-12 23:06:37] total 402096
[2025-10-12 23:06:37] -rw-r--r-- 2 boinc boinc 220132895 Oct 12 21:57 ATLAS.root_0
[2025-10-12 23:06:37] -rw-r--r-- 2 boinc boinc    569681 Oct 12 21:57 input.tar.gz
[2025-10-12 23:06:37] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:57 start_atlas.sh
[2025-10-12 23:06:37] -rw------- 1 boinc boinc 190117982 Oct 12 23:05 HITS.pool.root.1
[2025-10-12 23:06:37] -rw------- 1 boinc boinc    890880 Oct 12 23:06 result.tar.gz
23:06:38 (3511922): run_atlas exited; CPU time 15384.313504
23:06:38 (3511922): called boinc_finish(0)

</stderr_txt>
]]>

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