Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:22:49 (2250494): wrapper (7.7.26015): starting
21:22:49 (2250494): wrapper: running run_atlas (--nthreads 2)
[2025-10-12 21:22:49] Arguments: --nthreads 2
[2025-10-12 21:22:49] Threads: 2
[2025-10-12 21:22:49] Checking for CVMFS
[2025-10-12 21:22:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:22:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:22:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:22:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:22:49] 2.9.2.0 1188606 4628 62828 151633 0 57 34498130 36864001 0 130560 0 2792204 99.988 159610 754 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:22:49] CVMFS is ok
[2025-10-12 21:22:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:22:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:22:49] Further information can be found at the LHC@home message board.
[2025-10-12 21:22:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:22:49] Checking for apptainer binary...
[2025-10-12 21:22:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:22:49] Running /usr/bin/apptainer --version
[2025-10-12 21:22:49] apptainer version 1.4.1-1.1
[2025-10-12 21:22:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:22:49] magicA244
[2025-10-12 21:22:49] apptainer works
[2025-10-12 21:22:49] Set ATHENA_PROC_NUMBER=2
[2025-10-12 21:22:49] Set ATHENA_CORE_NUMBER=2
[2025-10-12 21:22:49] Starting ATLAS job with PandaID=6839660591
[2025-10-12 21:22:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:26:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | job 6839660591 has completed (purged errors)
[2025-10-12 23:26:27] 2025-10-12 21:25:55,392 | INFO     | overall cleanup function is called
[2025-10-12 23:26:27] 2025-10-12 21:25:56,398 | INFO     | --- collectZombieJob: --- 10, [2260610]
[2025-10-12 23:26:27] 2025-10-12 21:25:56,398 | INFO     | zombie collector waiting for pid 2260610
[2025-10-12 23:26:27] 2025-10-12 21:25:56,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:26:27] 2025-10-12 21:25:56,399 | INFO     | collected zombie processes
[2025-10-12 23:26:27] 2025-10-12 21:25:56,399 | INFO     | will attempt to kill all subprocesses of pid=2260610
[2025-10-12 23:26:27] 2025-10-12 21:25:56,431 | INFO     | process IDs to be killed: [2260610] (in reverse order)
[2025-10-12 23:26:27] 2025-10-12 21:25:56,452 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:26:27] 2025-10-12 21:25:56,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:26:27] 2025-10-12 21:25:56,453 | INFO     | did not find any defunct processes belonging to 2260610
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | did not find any defunct processes belonging to 2260610
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | ready for new job
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | ***************************************
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | ***************************************
[2025-10-12 23:26:27] 2025-10-12 21:25:56,454 | INFO     | 
[2025-10-12 23:26:27] 2025-10-12 21:25:56,455 | INFO     | architecture information:
[2025-10-12 23:26:27] 2025-10-12 21:25:56,455 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:26:27] 2025-10-12 21:25:56,463 | INFO     | cat /etc/os-release:
[2025-10-12 23:26:27] NAME="CentOS Linux"
[2025-10-12 23:26:27] VERSION="7 (Core)"
[2025-10-12 23:26:27] ID="centos"
[2025-10-12 23:26:27] ID_LIKE="rhel fedora"
[2025-10-12 23:26:27] VERSION_ID="7"
[2025-10-12 23:26:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:26:27] ANSI_COLOR="0;31"
[2025-10-12 23:26:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:26:27] HOME_URL="https://www.centos.org/"
[2025-10-12 23:26:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:26:27] 
[2025-10-12 23:26:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:26:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:26:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:26:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:26:27] 
[2025-10-12 23:26:27] 2025-10-12 21:25:56,463 | INFO     | ***************************************
[2025-10-12 23:26:27] 2025-10-12 21:25:56,967 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:26:27] 2025-10-12 21:25:56,979 | INFO     | sufficient remaining disk space (489370419200 B)
[2025-10-12 23:26:27] 2025-10-12 21:25:56,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:26:27] 2025-10-12 21:25:56,979 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:26:27] 2025-10-12 21:25:56,979 | INFO     | update_server=False
[2025-10-12 23:26:27] 2025-10-12 21:25:56,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:26:27] 2025-10-12 21:25:56,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:26:27] 2025-10-12 21:25:57,178 | INFO     | all data control threads have been joined
[2025-10-12 23:26:27] 2025-10-12 21:25:57,406 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:26:27] 2025-10-12 21:25:57,407 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:26:27] 2025-10-12 21:25:57,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:26:27] 2025-10-12 21:25:57,407 | INFO     | will abort loop
[2025-10-12 23:26:27] 2025-10-12 21:25:57,904 | INFO     | all payload control threads have been joined
[2025-10-12 23:26:27] 2025-10-12 21:25:57,985 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:57,986 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:58,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:26:27] 2025-10-12 21:25:58,180 | INFO     | all job control threads have been joined
[2025-10-12 23:26:27] 2025-10-12 21:25:58,184 | INFO     | [data] control thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:58,353 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:58,413 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:58,519 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:58,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:26:27] 2025-10-12 21:25:58,792 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:58,910 | INFO     | [payload] control thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:59,025 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:59,186 | INFO     | [job] control thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:59,251 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:59,315 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:25:59,318 | INFO     | [job] validate thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:26:00,118 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:26:02,672 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:26:07,791 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:26:27] 2025-10-12 21:26:08,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:26:27] 2025-10-12 21:26:14,211 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:26:27] 2025-10-12 21:26:15,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140716882642752)>', '<ExcThread(monitor, started 140716390991616)>']
[2025-10-12 23:26:27] 2025-10-12 21:26:20,520 | INFO     | all workflow threads have been joined
[2025-10-12 23:26:27] 2025-10-12 21:26:20,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:26:27] 2025-10-12 21:26:20,521 | INFO     | traces error code: 0
[2025-10-12 23:26:27] 2025-10-12 21:26:20,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:26:27] 2025-10-12 21:26:27,702 | INFO     | PID=2254199 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:26:27] 2025-10-12 21:26:27,702 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:26:27] 2025-10-12 21:26:27,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:26:27] 2025-10-12 21:26:27,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:26:27] 2025-10-12 21:26:27,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:26:27] 2025-10-12 21:26:27,702 | INFO     | [monitor] control thread has ended
[2025-10-12 23:26:27] 2025-10-12 21:26:27,741 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:26:27] 2025-10-12 21:26:27,744 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:26:27] 2025-10-12 21:26:27,746 [wrapper] pilotpid: 2254199
[2025-10-12 23:26:27] 2025-10-12 21:26:27,748 [wrapper] Pilot exit status: 0
[2025-10-12 23:26:27] 2025-10-12 21:26:27,754 [wrapper] pandaids: 6839660591
[2025-10-12 23:26:27] 2025-10-12 21:26:27,766 [wrapper] cleanup supervisor_pilot 2275087 2254200
[2025-10-12 23:26:27] 2025-10-12 21:26:27,768 [wrapper] Test setup, not cleaning
[2025-10-12 23:26:27] 2025-10-12 21:26:27,770 [wrapper] apfmon messages muted
[2025-10-12 23:26:27] 2025-10-12 21:26:27,772 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:26:27] 2025-10-12 21:26:27,774 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:26:27]  *** Error codes and diagnostics ***
[2025-10-12 23:26:27]     "exeErrorCode": 0,
[2025-10-12 23:26:27]     "exeErrorDiag": "",
[2025-10-12 23:26:27]     "pilotErrorCode": 0,
[2025-10-12 23:26:27]     "pilotErrorDiag": "",
[2025-10-12 23:26:27]  *** Listing of results directory ***
[2025-10-12 23:26:27] total 411784
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc    557409 Oct 12 09:58 pilot3.tar.gz
[2025-10-12 23:26:27] -rwx------ 1 boinc boinc     36292 Oct 12 09:58 runpilot2-wrapper.sh
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:58 queuedata.json
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:26:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:22 run_atlas
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:22 job.xml
[2025-10-12 23:26:27] -rw-r--r-- 2 boinc boinc 222685196 Oct 12 21:22 EVNT.46676267._003525.pool.root.1
[2025-10-12 23:26:27] -rw-r--r-- 2 boinc boinc    569675 Oct 12 21:22 input.tar.gz
[2025-10-12 23:26:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:22 start_atlas.sh
[2025-10-12 23:26:27] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:22 shared
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:22 boinc_setup_complete
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc      6209 Oct 12 21:22 init_data.xml
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:22 boinc_lockfile
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc      2549 Oct 12 21:22 pandaJob.out
[2025-10-12 23:26:27] -rw------- 1 boinc boinc    975536 Oct 12 21:23 agis_schedconf.cvmfs.json
[2025-10-12 23:26:27] -rw------- 1 boinc boinc   1560580 Oct 12 21:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:26:27] drwx------ 5 boinc boinc      4096 Oct 12 21:23 pilot3
[2025-10-12 23:26:27] -rw------- 1 boinc boinc 192408676 Oct 12 23:25 HITS.46676269._074082.pool.root.1
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:25 boinc_task_state.xml
[2025-10-12 23:26:27] -rw------- 1 boinc boinc      1017 Oct 12 23:25 memory_monitor_summary.json
[2025-10-12 23:26:27] -rw------- 1 boinc boinc        95 Oct 12 23:25 pilot_heartbeat.json
[2025-10-12 23:26:27] -rw------- 1 boinc boinc    281245 Oct 12 23:25 log.46676269._074082.job.log.tgz.1
[2025-10-12 23:26:27] -rw------- 1 boinc boinc      7765 Oct 12 23:25 heartbeat.json
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:26 boinc_mmap_file
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:26 wrapper_checkpoint.txt
[2025-10-12 23:26:27] -rw------- 1 boinc boinc       747 Oct 12 23:26 pilotlog.txt
[2025-10-12 23:26:27] -rw------- 1 boinc boinc   1064169 Oct 12 23:26 log.46676269._074082.job.log.1
[2025-10-12 23:26:27] -rw------- 1 boinc boinc       357 Oct 12 23:26 output.list
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:26 runtime_log
[2025-10-12 23:26:27] -rw------- 1 boinc boinc   1361920 Oct 12 23:26 result.tar.gz
[2025-10-12 23:26:27] -rw------- 1 boinc boinc       662 Oct 12 23:26 z3ZLDmt95R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGUTMDmgKhNum.diag
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc      8792 Oct 12 23:26 runtime_log.err
[2025-10-12 23:26:27] -rw-r--r-- 1 boinc boinc     11744 Oct 12 23:26 stderr.txt
[2025-10-12 23:26:27] HITS file was successfully produced:
[2025-10-12 23:26:27] -rw------- 1 boinc boinc 192408676 Oct 12 23:25 shared/HITS.pool.root.1
[2025-10-12 23:26:27]  *** Contents of shared directory: ***
[2025-10-12 23:26:27] total 407280
[2025-10-12 23:26:27] -rw-r--r-- 2 boinc boinc 222685196 Oct 12 21:22 ATLAS.root_0
[2025-10-12 23:26:27] -rw-r--r-- 2 boinc boinc    569675 Oct 12 21:22 input.tar.gz
[2025-10-12 23:26:27] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:22 start_atlas.sh
[2025-10-12 23:26:27] -rw------- 1 boinc boinc 192408676 Oct 12 23:25 HITS.pool.root.1
[2025-10-12 23:26:27] -rw------- 1 boinc boinc   1361920 Oct 12 23:26 result.tar.gz
23:26:29 (2250494): run_atlas exited; CPU time 14296.758029
23:26:29 (2250494): called boinc_finish(0)

</stderr_txt>
]]>

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