Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:37 (2231229): wrapper (7.7.26015): starting
13:36:37 (2231229): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 13:36:37] Arguments: --nthreads 3
[2025-10-12 13:36:37] Threads: 3
[2025-10-12 13:36:37] Checking for CVMFS
[2025-10-12 13:36:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:36:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:36:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:36:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:36:37] 2.9.2.0 962579 4191 84268 151619 3 57 2768086 36864000 0 130560 0 3347873 99.991 142904 802 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 13:36:37] CVMFS is ok
[2025-10-12 13:36:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:36:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:36:37] Further information can be found at the LHC@home message board.
[2025-10-12 13:36:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:36:37] Checking for apptainer binary...
[2025-10-12 13:36:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:36:37] Running /usr/bin/apptainer --version
[2025-10-12 13:36:37] apptainer version 1.4.1-1.1
[2025-10-12 13:36:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:36:37] thA330b
[2025-10-12 13:36:37] apptainer works
[2025-10-12 13:36:37] Set ATHENA_PROC_NUMBER=3
[2025-10-12 13:36:37] Set ATHENA_CORE_NUMBER=3
[2025-10-12 13:36:37] Starting ATLAS job with PandaID=6839588842
[2025-10-12 13:36:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:57:54]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:57:54] 2025-10-12 12:57:00,477 | INFO     | aborting job monitoring since job object (job id=6839588842) has expired
[2025-10-12 14:57:54] 2025-10-12 12:57:00,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:57:54] 2025-10-12 12:57:00,477 | INFO     | will abort loop
[2025-10-12 14:57:54] 2025-10-12 12:57:01,191 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,191 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,195 | INFO     | [job] control thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,217 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,394 | INFO     | [data] control thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,480 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,482 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:01,662 | INFO     | all payload control threads have been joined
[2025-10-12 14:57:54] 2025-10-12 12:57:02,057 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:02,185 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:02,191 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:02,555 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:02,584 | INFO     | [job] validate thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:02,667 | INFO     | [payload] control thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:02,685 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:04,405 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:10,958 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:57:54] 2025-10-12 12:57:11,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:57:54] 2025-10-12 12:57:48,047 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:57:54] 2025-10-12 12:57:49,020 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140029246375744)>', '<ExcThread(monitor, started 140028449634048)>']
[2025-10-12 14:57:54] 2025-10-12 12:57:49,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:57:54] 2025-10-12 12:57:49,415 | INFO     | [monitor] control thread has ended
[2025-10-12 14:57:54] 2025-10-12 12:57:54,045 | INFO     | all workflow threads have been joined
[2025-10-12 14:57:54] 2025-10-12 12:57:54,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:57:54] 2025-10-12 12:57:54,046 | INFO     | traces error code: 0
[2025-10-12 14:57:54] 2025-10-12 12:57:54,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:57:54] 2025-10-12 12:57:54,096 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:57:54] 2025-10-12 12:57:54,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:57:54] 2025-10-12 12:57:54,101 [wrapper] pilotpid: 2234954
[2025-10-12 14:57:54] 2025-10-12 12:57:54,103 [wrapper] Pilot exit status: 0
[2025-10-12 14:57:54] 2025-10-12 12:57:54,111 [wrapper] pandaids: 6839588842
[2025-10-12 14:57:54] 2025-10-12 12:57:54,128 [wrapper] cleanup supervisor_pilot 2253309 2234955
[2025-10-12 14:57:54] 2025-10-12 12:57:54,130 [wrapper] Test setup, not cleaning
[2025-10-12 14:57:54] 2025-10-12 12:57:54,133 [wrapper] apfmon messages muted
[2025-10-12 14:57:54] 2025-10-12 12:57:54,135 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:57:54] 2025-10-12 12:57:54,138 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:57:54]  *** Error codes and diagnostics ***
[2025-10-12 14:57:54]     "exeErrorCode": 0,
[2025-10-12 14:57:54]     "exeErrorDiag": "",
[2025-10-12 14:57:54]     "pilotErrorCode": 0,
[2025-10-12 14:57:54]     "pilotErrorDiag": "",
[2025-10-12 14:57:54]  *** Listing of results directory ***
[2025-10-12 14:57:54] total 407928
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc    557409 Oct 12 07:26 pilot3.tar.gz
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:31 queuedata.json
[2025-10-12 14:57:54] -rwx------ 1 boinc boinc     36292 Oct 12 07:31 runpilot2-wrapper.sh
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc       100 Oct 12 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:57:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 13:36 run_atlas
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc       105 Oct 12 13:36 job.xml
[2025-10-12 14:57:54] -rw-r--r-- 2 boinc boinc 218820376 Oct 12 13:36 EVNT.46676267._004324.pool.root.1
[2025-10-12 14:57:54] -rw-r--r-- 2 boinc boinc    569684 Oct 12 13:36 input.tar.gz
[2025-10-12 14:57:54] -rw-r--r-- 2 boinc boinc     15120 Oct 12 13:36 start_atlas.sh
[2025-10-12 14:57:54] drwxrwx--x 2 boinc boinc      4096 Oct 12 13:36 shared
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc         0 Oct 12 13:36 boinc_setup_complete
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc      6439 Oct 12 13:36 init_data.xml
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc         0 Oct 12 13:36 boinc_lockfile
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc      2550 Oct 12 13:36 pandaJob.out
[2025-10-12 14:57:54] -rw------- 1 boinc boinc    975520 Oct 12 13:36 agis_schedconf.cvmfs.json
[2025-10-12 14:57:54] -rw------- 1 boinc boinc   1560580 Oct 12 13:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:57:54] drwx------ 5 boinc boinc      4096 Oct 12 13:36 pilot3
[2025-10-12 14:57:54] -rw------- 1 boinc boinc        95 Oct 12 14:56 pilot_heartbeat.json
[2025-10-12 14:57:54] -rw------- 1 boinc boinc 193081113 Oct 12 14:56 HITS.46676269._072034.pool.root.1
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc       530 Oct 12 14:56 boinc_task_state.xml
[2025-10-12 14:57:54] -rw------- 1 boinc boinc      1020 Oct 12 14:56 memory_monitor_summary.json
[2025-10-12 14:57:54] -rw------- 1 boinc boinc    255916 Oct 12 14:56 log.46676269._072034.job.log.tgz.1
[2025-10-12 14:57:54] -rw------- 1 boinc boinc      7767 Oct 12 14:56 heartbeat.json
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc        27 Oct 12 14:57 wrapper_checkpoint.txt
[2025-10-12 14:57:54] -rw------- 1 boinc boinc      6129 Oct 12 14:57 pilotlog.txt
[2025-10-12 14:57:54] -rw------- 1 boinc boinc    708997 Oct 12 14:57 log.46676269._072034.job.log.1
[2025-10-12 14:57:54] -rw------- 1 boinc boinc       357 Oct 12 14:57 output.list
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc       620 Oct 12 14:57 runtime_log
[2025-10-12 14:57:54] -rw------- 1 boinc boinc    983040 Oct 12 14:57 result.tar.gz
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc      8192 Oct 12 14:57 boinc_mmap_file
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc      8782 Oct 12 14:57 runtime_log.err
[2025-10-12 14:57:54] -rw------- 1 boinc boinc       659 Oct 12 14:57 6NYKDm4q3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmIJTMDmxo5EYm.diag
[2025-10-12 14:57:54] -rw-r--r-- 1 boinc boinc      6274 Oct 12 14:57 stderr.txt
[2025-10-12 14:57:54] HITS file was successfully produced:
[2025-10-12 14:57:54] -rw------- 1 boinc boinc 193081113 Oct 12 14:56 shared/HITS.pool.root.1
[2025-10-12 14:57:54]  *** Contents of shared directory: ***
[2025-10-12 14:57:54] total 403792
[2025-10-12 14:57:54] -rw-r--r-- 2 boinc boinc 218820376 Oct 12 13:36 ATLAS.root_0
[2025-10-12 14:57:54] -rw-r--r-- 2 boinc boinc    569684 Oct 12 13:36 input.tar.gz
[2025-10-12 14:57:54] -rw-r--r-- 2 boinc boinc     15120 Oct 12 13:36 start_atlas.sh
[2025-10-12 14:57:54] -rw------- 1 boinc boinc 193081113 Oct 12 14:56 HITS.pool.root.1
[2025-10-12 14:57:54] -rw------- 1 boinc boinc    983040 Oct 12 14:57 result.tar.gz
14:58:16 (2231229): run_atlas exited; CPU time 13769.158485
14:58:16 (2231229): called boinc_finish(0)

</stderr_txt>
]]>

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