Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:01:10 (2598214): wrapper (7.7.26015): starting
02:01:10 (2598214): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 02:01:10] Arguments: --nthreads 3
[2025-10-13 02:01:10] Threads: 3
[2025-10-13 02:01:10] Checking for CVMFS
[2025-10-13 02:01:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:01:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:01:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:01:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:01:11] 2.9.2.0 1053818 5015 88988 151641 1 57 4073378 36864000 0 130560 0 4069292 99.991 169601 931 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 02:01:11] CVMFS is ok
[2025-10-13 02:01:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:01:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:01:11] Further information can be found at the LHC@home message board.
[2025-10-13 02:01:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:01:11] Checking for apptainer binary...
[2025-10-13 02:01:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:01:11] Running /usr/bin/apptainer --version
[2025-10-13 02:01:11] apptainer version 1.4.1-1.1
[2025-10-13 02:01:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:01:11] thA373
[2025-10-13 02:01:11] apptainer works
[2025-10-13 02:01:11] Set ATHENA_PROC_NUMBER=3
[2025-10-13 02:01:11] Set ATHENA_CORE_NUMBER=3
[2025-10-13 02:01:11] Starting ATLAS job with PandaID=6839220982
[2025-10-13 02:01:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:19:27]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | job 6839220982 has completed (purged errors)
[2025-10-13 03:19:27] 2025-10-13 01:18:47,437 | INFO     | overall cleanup function is called
[2025-10-13 03:19:27] 2025-10-13 01:18:48,444 | INFO     | --- collectZombieJob: --- 10, [2608362]
[2025-10-13 03:19:27] 2025-10-13 01:18:48,444 | INFO     | zombie collector waiting for pid 2608362
[2025-10-13 03:19:27] 2025-10-13 01:18:48,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:19:27] 2025-10-13 01:18:48,444 | INFO     | collected zombie processes
[2025-10-13 03:19:27] 2025-10-13 01:18:48,444 | INFO     | will attempt to kill all subprocesses of pid=2608362
[2025-10-13 03:19:27] 2025-10-13 01:18:48,487 | INFO     | process IDs to be killed: [2608362] (in reverse order)
[2025-10-13 03:19:27] 2025-10-13 01:18:48,511 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:19:27] 2025-10-13 01:18:48,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:19:27] 2025-10-13 01:18:48,513 | INFO     | did not find any defunct processes belonging to 2608362
[2025-10-13 03:19:27] 2025-10-13 01:18:48,514 | INFO     | did not find any defunct processes belonging to 2608362
[2025-10-13 03:19:27] 2025-10-13 01:18:48,514 | INFO     | ready for new job
[2025-10-13 03:19:27] 2025-10-13 01:18:48,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:19:27] 2025-10-13 01:18:48,514 | INFO     | ***************************************
[2025-10-13 03:19:27] 2025-10-13 01:18:48,515 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:19:27] 2025-10-13 01:18:48,515 | INFO     | ***************************************
[2025-10-13 03:19:27] 2025-10-13 01:18:48,515 | INFO     | 
[2025-10-13 03:19:27] 2025-10-13 01:18:48,515 | INFO     | architecture information:
[2025-10-13 03:19:27] 2025-10-13 01:18:48,515 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:19:27] 2025-10-13 01:18:48,523 | INFO     | cat /etc/os-release:
[2025-10-13 03:19:27] NAME="CentOS Linux"
[2025-10-13 03:19:27] VERSION="7 (Core)"
[2025-10-13 03:19:27] ID="centos"
[2025-10-13 03:19:27] ID_LIKE="rhel fedora"
[2025-10-13 03:19:27] VERSION_ID="7"
[2025-10-13 03:19:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:19:27] ANSI_COLOR="0;31"
[2025-10-13 03:19:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:19:27] HOME_URL="https://www.centos.org/"
[2025-10-13 03:19:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:19:27] 
[2025-10-13 03:19:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:19:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:19:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:19:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:19:27] 
[2025-10-13 03:19:27] 2025-10-13 01:18:48,523 | INFO     | ***************************************
[2025-10-13 03:19:27] 2025-10-13 01:18:49,027 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:19:27] 2025-10-13 01:18:49,039 | INFO     | sufficient remaining disk space (255422627840 B)
[2025-10-13 03:19:27] 2025-10-13 01:18:49,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:19:27] 2025-10-13 01:18:49,039 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:19:27] 2025-10-13 01:18:49,039 | INFO     | update_server=False
[2025-10-13 03:19:27] 2025-10-13 01:18:49,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:19:27] 2025-10-13 01:18:49,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:19:27] 2025-10-13 01:18:49,106 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:19:27] 2025-10-13 01:18:49,106 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:19:27] 2025-10-13 01:18:49,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:19:27] 2025-10-13 01:18:49,106 | INFO     | will abort loop
[2025-10-13 03:19:27] 2025-10-13 01:18:49,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:19:27] 2025-10-13 01:18:49,986 | INFO     | all data control threads have been joined
[2025-10-13 03:19:27] 2025-10-13 01:18:50,045 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:50,045 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:50,112 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:50,147 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:50,151 | INFO     | all payload control threads have been joined
[2025-10-13 03:19:27] 2025-10-13 01:18:50,601 | INFO     | all job control threads have been joined
[2025-10-13 03:19:27] 2025-10-13 01:18:50,784 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:50,876 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:50,992 | INFO     | [data] control thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,008 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,157 | INFO     | [payload] control thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,305 | INFO     | [job] validate thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,404 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,404 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,511 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,607 | INFO     | [job] control thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:51,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:19:27] 2025-10-13 01:18:55,739 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:18:59,931 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:19:27] 2025-10-13 01:19:00,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:19:27] 2025-10-13 01:19:18,842 | INFO     | PID=2601930 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:19:27] 2025-10-13 01:19:18,842 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:19:27] 2025-10-13 01:19:18,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:19:27] 2025-10-13 01:19:18,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:19:27] 2025-10-13 01:19:21,640 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:19:27] 2025-10-13 01:19:22,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108153358144)>', '<ExcThread(monitor, started 140107529053952)>']
[2025-10-13 03:19:27] 2025-10-13 01:19:22,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:19:27] 2025-10-13 01:19:22,864 | INFO     | [monitor] control thread has ended
[2025-10-13 03:19:27] 2025-10-13 01:19:27,558 | INFO     | all workflow threads have been joined
[2025-10-13 03:19:27] 2025-10-13 01:19:27,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:19:27] 2025-10-13 01:19:27,560 | INFO     | traces error code: 0
[2025-10-13 03:19:27] 2025-10-13 01:19:27,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:19:27] 2025-10-13 01:19:27,609 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:19:27] 2025-10-13 01:19:27,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:19:27] 2025-10-13 01:19:27,614 [wrapper] pilotpid: 2601930
[2025-10-13 03:19:27] 2025-10-13 01:19:27,616 [wrapper] Pilot exit status: 0
[2025-10-13 03:19:27] 2025-10-13 01:19:27,623 [wrapper] pandaids: 6839220982
[2025-10-13 03:19:27] 2025-10-13 01:19:27,639 [wrapper] cleanup supervisor_pilot 2620316 2601931
[2025-10-13 03:19:27] 2025-10-13 01:19:27,641 [wrapper] Test setup, not cleaning
[2025-10-13 03:19:27] 2025-10-13 01:19:27,644 [wrapper] apfmon messages muted
[2025-10-13 03:19:27] 2025-10-13 01:19:27,646 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:19:27] 2025-10-13 01:19:27,648 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:19:27]  *** Error codes and diagnostics ***
[2025-10-13 03:19:27]     "exeErrorCode": 0,
[2025-10-13 03:19:27]     "exeErrorDiag": "",
[2025-10-13 03:19:27]     "pilotErrorCode": 0,
[2025-10-13 03:19:27]     "pilotErrorDiag": "",
[2025-10-13 03:19:27]  *** Listing of results directory ***
[2025-10-13 03:19:27] total 406988
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc    557409 Oct 12 03:02 pilot3.tar.gz
[2025-10-13 03:19:27] -rwx------ 1 boinc boinc     36292 Oct 12 03:23 runpilot2-wrapper.sh
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc      5112 Oct 12 03:23 queuedata.json
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:19:27] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:01 run_atlas
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:01 job.xml
[2025-10-13 03:19:27] -rw-r--r-- 2 boinc boinc 221129290 Oct 13 02:01 EVNT.46676267._001416.pool.root.1
[2025-10-13 03:19:27] -rw-r--r-- 2 boinc boinc    569680 Oct 13 02:01 input.tar.gz
[2025-10-13 03:19:27] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:01 start_atlas.sh
[2025-10-13 03:19:27] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:01 shared
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:01 boinc_setup_complete
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc      6437 Oct 13 02:01 init_data.xml
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:01 boinc_lockfile
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:01 pandaJob.out
[2025-10-13 03:19:27] -rw------- 1 boinc boinc    975603 Oct 13 02:01 agis_schedconf.cvmfs.json
[2025-10-13 03:19:27] -rw------- 1 boinc boinc   1560580 Oct 13 02:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:19:27] drwx------ 5 boinc boinc      4096 Oct 13 02:01 pilot3
[2025-10-13 03:19:27] -rw------- 1 boinc boinc 189849402 Oct 13 03:18 HITS.46676269._068308.pool.root.1
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:18 boinc_task_state.xml
[2025-10-13 03:19:27] -rw------- 1 boinc boinc      1021 Oct 13 03:18 memory_monitor_summary.json
[2025-10-13 03:19:27] -rw------- 1 boinc boinc        95 Oct 13 03:18 pilot_heartbeat.json
[2025-10-13 03:19:27] -rw------- 1 boinc boinc    252984 Oct 13 03:18 log.46676269._068308.job.log.tgz.1
[2025-10-13 03:19:27] -rw------- 1 boinc boinc      7768 Oct 13 03:18 heartbeat.json
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:19 wrapper_checkpoint.txt
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:19 boinc_mmap_file
[2025-10-13 03:19:27] -rw------- 1 boinc boinc      5010 Oct 13 03:19 pilotlog.txt
[2025-10-13 03:19:27] -rw------- 1 boinc boinc    686677 Oct 13 03:19 log.46676269._068308.job.log.1
[2025-10-13 03:19:27] -rw------- 1 boinc boinc       357 Oct 13 03:19 output.list
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:19 runtime_log
[2025-10-13 03:19:27] -rw------- 1 boinc boinc    962560 Oct 13 03:19 result.tar.gz
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc      8777 Oct 13 03:19 runtime_log.err
[2025-10-13 03:19:27] -rw------- 1 boinc boinc       658 Oct 13 03:19 lTbLDmGzzR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyAiNDm6dwNEm.diag
[2025-10-13 03:19:27] -rw-r--r-- 1 boinc boinc     12571 Oct 13 03:19 stderr.txt
[2025-10-13 03:19:27] HITS file was successfully produced:
[2025-10-13 03:19:27] -rw------- 1 boinc boinc 189849402 Oct 13 03:18 shared/HITS.pool.root.1
[2025-10-13 03:19:27]  *** Contents of shared directory: ***
[2025-10-13 03:19:27] total 402872
[2025-10-13 03:19:27] -rw-r--r-- 2 boinc boinc 221129290 Oct 13 02:01 ATLAS.root_0
[2025-10-13 03:19:27] -rw-r--r-- 2 boinc boinc    569680 Oct 13 02:01 input.tar.gz
[2025-10-13 03:19:27] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:01 start_atlas.sh
[2025-10-13 03:19:27] -rw------- 1 boinc boinc 189849402 Oct 13 03:18 HITS.pool.root.1
[2025-10-13 03:19:27] -rw------- 1 boinc boinc    962560 Oct 13 03:19 result.tar.gz
03:19:29 (2598214): run_atlas exited; CPU time 13320.968346
03:19:29 (2598214): called boinc_finish(0)

</stderr_txt>
]]>

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