Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:04:26 (2944624): wrapper (7.7.26015): starting
22:04:26 (2944624): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 22:04:26] Arguments: --nthreads 3
[2025-10-12 22:04:26] Threads: 3
[2025-10-12 22:04:26] Checking for CVMFS
[2025-10-12 22:04:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:04:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:04:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:04:26] 2.9.2.0 1494257 4826 81504 151635 2 57 24137279 36864000 0 130560 0 3813716 99.991 165282 931 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 22:04:26] CVMFS is ok
[2025-10-12 22:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:04:26] Further information can be found at the LHC@home message board.
[2025-10-12 22:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:04:26] Checking for apptainer binary...
[2025-10-12 22:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:04:26] Running /usr/bin/apptainer --version
[2025-10-12 22:04:26] apptainer version 1.4.1-1.1
[2025-10-12 22:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:04:26] thA331a
[2025-10-12 22:04:26] apptainer works
[2025-10-12 22:04:26] Set ATHENA_PROC_NUMBER=3
[2025-10-12 22:04:26] Set ATHENA_CORE_NUMBER=3
[2025-10-12 22:04:26] Starting ATLAS job with PandaID=6839474914
[2025-10-12 22:04:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:24:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:24:46] 2025-10-12 21:24:14,873 | INFO     | --- collectZombieJob: --- 10, [2954773]
[2025-10-12 23:24:46] 2025-10-12 21:24:14,873 | INFO     | zombie collector waiting for pid 2954773
[2025-10-12 23:24:46] 2025-10-12 21:24:14,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:24:46] 2025-10-12 21:24:14,874 | INFO     | collected zombie processes
[2025-10-12 23:24:46] 2025-10-12 21:24:14,874 | INFO     | will attempt to kill all subprocesses of pid=2954773
[2025-10-12 23:24:46] 2025-10-12 21:24:14,917 | INFO     | process IDs to be killed: [2954773] (in reverse order)
[2025-10-12 23:24:46] 2025-10-12 21:24:14,941 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:24:46] 2025-10-12 21:24:14,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:24:46] 2025-10-12 21:24:14,942 | INFO     | did not find any defunct processes belonging to 2954773
[2025-10-12 23:24:46] 2025-10-12 21:24:14,943 | INFO     | did not find any defunct processes belonging to 2954773
[2025-10-12 23:24:46] 2025-10-12 21:24:14,944 | INFO     | ready for new job
[2025-10-12 23:24:46] 2025-10-12 21:24:14,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:24:46] 2025-10-12 21:24:14,944 | INFO     | ***************************************
[2025-10-12 23:24:46] 2025-10-12 21:24:14,944 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:24:46] 2025-10-12 21:24:14,944 | INFO     | ***************************************
[2025-10-12 23:24:46] 2025-10-12 21:24:14,944 | INFO     | 
[2025-10-12 23:24:46] 2025-10-12 21:24:14,945 | INFO     | architecture information:
[2025-10-12 23:24:46] 2025-10-12 21:24:14,945 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:24:46] 2025-10-12 21:24:14,953 | INFO     | cat /etc/os-release:
[2025-10-12 23:24:46] NAME="CentOS Linux"
[2025-10-12 23:24:46] VERSION="7 (Core)"
[2025-10-12 23:24:46] ID="centos"
[2025-10-12 23:24:46] ID_LIKE="rhel fedora"
[2025-10-12 23:24:46] VERSION_ID="7"
[2025-10-12 23:24:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:24:46] ANSI_COLOR="0;31"
[2025-10-12 23:24:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:24:46] HOME_URL="https://www.centos.org/"
[2025-10-12 23:24:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:24:46] 
[2025-10-12 23:24:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:24:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:24:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:24:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:24:46] 
[2025-10-12 23:24:46] 2025-10-12 21:24:14,953 | INFO     | ***************************************
[2025-10-12 23:24:46] 2025-10-12 21:24:15,456 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | INFO     | sufficient remaining disk space (335819046912 B)
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | INFO     | update_server=False
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:24:46] 2025-10-12 21:24:15,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:24:46] 2025-10-12 21:24:15,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:24:46] 2025-10-12 21:24:15,972 | INFO     | aborting loop
[2025-10-12 23:24:46] 2025-10-12 21:24:16,054 | INFO     | all data control threads have been joined
[2025-10-12 23:24:46] 2025-10-12 21:24:16,062 | INFO     | all job control threads have been joined
[2025-10-12 23:24:46] 2025-10-12 21:24:16,473 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:16,473 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:16,849 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:16,954 | INFO     | all payload control threads have been joined
[2025-10-12 23:24:46] 2025-10-12 21:24:16,976 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,050 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,060 | INFO     | [data] control thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,068 | INFO     | [job] control thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,473 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,576 | INFO     | [job] validate thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,598 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,642 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,683 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:17,959 | INFO     | [payload] control thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:18,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:24:46] 2025-10-12 21:24:18,016 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:22,023 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:26,273 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:24:46] 2025-10-12 21:24:27,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:24:46] 2025-10-12 21:24:37,494 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:24:46] 2025-10-12 21:24:38,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525678503744)>', '<ExcThread(monitor, started 140524744861440)>']
[2025-10-12 23:24:46] 2025-10-12 21:24:43,073 | INFO     | all workflow threads have been joined
[2025-10-12 23:24:46] 2025-10-12 21:24:43,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:24:46] 2025-10-12 21:24:43,073 | INFO     | traces error code: 0
[2025-10-12 23:24:46] 2025-10-12 21:24:43,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:24:46] 2025-10-12 21:24:45,903 | INFO     | PID=2948344 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:24:46] 2025-10-12 21:24:45,903 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:24:46] 2025-10-12 21:24:45,903 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:24:46] 2025-10-12 21:24:45,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:24:46] 2025-10-12 21:24:45,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:24:46] 2025-10-12 21:24:45,903 | INFO     | [monitor] control thread has ended
[2025-10-12 23:24:46] 2025-10-12 21:24:45,950 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:24:46] 2025-10-12 21:24:45,952 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:24:46] 2025-10-12 21:24:45,954 [wrapper] pilotpid: 2948344
[2025-10-12 23:24:46] 2025-10-12 21:24:45,956 [wrapper] Pilot exit status: 0
[2025-10-12 23:24:46] 2025-10-12 21:24:45,963 [wrapper] pandaids: 6839474914
[2025-10-12 23:24:46] 2025-10-12 21:24:45,979 [wrapper] cleanup supervisor_pilot 2967009 2948345
[2025-10-12 23:24:46] 2025-10-12 21:24:45,981 [wrapper] Test setup, not cleaning
[2025-10-12 23:24:46] 2025-10-12 21:24:45,983 [wrapper] apfmon messages muted
[2025-10-12 23:24:46] 2025-10-12 21:24:45,985 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:24:46] 2025-10-12 21:24:45,987 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:24:46]  *** Error codes and diagnostics ***
[2025-10-12 23:24:46]     "exeErrorCode": 0,
[2025-10-12 23:24:46]     "exeErrorDiag": "",
[2025-10-12 23:24:46]     "pilotErrorCode": 0,
[2025-10-12 23:24:46]     "pilotErrorDiag": "",
[2025-10-12 23:24:46]  *** Listing of results directory ***
[2025-10-12 23:24:46] total 406128
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 23:24:46] -rwx------ 1 boinc boinc     36292 Oct 12 07:15 runpilot2-wrapper.sh
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:15 queuedata.json
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:24:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:04 run_atlas
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:04 job.xml
[2025-10-12 23:24:46] -rw-r--r-- 2 boinc boinc 221794550 Oct 12 22:04 EVNT.46676267._004311.pool.root.1
[2025-10-12 23:24:46] -rw-r--r-- 2 boinc boinc    569679 Oct 12 22:04 input.tar.gz
[2025-10-12 23:24:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:04 start_atlas.sh
[2025-10-12 23:24:46] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:04 shared
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:04 boinc_setup_complete
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc      6440 Oct 12 22:04 init_data.xml
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:04 boinc_lockfile
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:04 pandaJob.out
[2025-10-12 23:24:46] -rw------- 1 boinc boinc    975536 Oct 12 22:04 agis_schedconf.cvmfs.json
[2025-10-12 23:24:46] -rw------- 1 boinc boinc   1560580 Oct 12 22:04 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:24:46] drwx------ 5 boinc boinc      4096 Oct 12 22:04 pilot3
[2025-10-12 23:24:46] -rw------- 1 boinc boinc 188245084 Oct 12 23:23 HITS.46676269._071672.pool.root.1
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:23 boinc_task_state.xml
[2025-10-12 23:24:46] -rw------- 1 boinc boinc        95 Oct 12 23:23 pilot_heartbeat.json
[2025-10-12 23:24:46] -rw------- 1 boinc boinc      1033 Oct 12 23:24 memory_monitor_summary.json
[2025-10-12 23:24:46] -rw------- 1 boinc boinc    265331 Oct 12 23:24 log.46676269._071672.job.log.tgz.1
[2025-10-12 23:24:46] -rw------- 1 boinc boinc      7763 Oct 12 23:24 heartbeat.json
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:24 boinc_mmap_file
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:24 wrapper_checkpoint.txt
[2025-10-12 23:24:46] -rw------- 1 boinc boinc       747 Oct 12 23:24 pilotlog.txt
[2025-10-12 23:24:46] -rw------- 1 boinc boinc    704475 Oct 12 23:24 log.46676269._071672.job.log.1
[2025-10-12 23:24:46] -rw------- 1 boinc boinc       357 Oct 12 23:24 output.list
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:24 runtime_log
[2025-10-12 23:24:46] -rw------- 1 boinc boinc    993280 Oct 12 23:24 result.tar.gz
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc      8782 Oct 12 23:24 runtime_log.err
[2025-10-12 23:24:46] -rw------- 1 boinc boinc       659 Oct 12 23:24 VNXMDm4b3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3GTMDmhNSygn.diag
[2025-10-12 23:24:46] -rw-r--r-- 1 boinc boinc     10708 Oct 12 23:24 stderr.txt
[2025-10-12 23:24:46] HITS file was successfully produced:
[2025-10-12 23:24:46] -rw------- 1 boinc boinc 188245084 Oct 12 23:23 shared/HITS.pool.root.1
[2025-10-12 23:24:46]  *** Contents of shared directory: ***
[2025-10-12 23:24:46] total 401992
[2025-10-12 23:24:46] -rw-r--r-- 2 boinc boinc 221794550 Oct 12 22:04 ATLAS.root_0
[2025-10-12 23:24:46] -rw-r--r-- 2 boinc boinc    569679 Oct 12 22:04 input.tar.gz
[2025-10-12 23:24:46] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:04 start_atlas.sh
[2025-10-12 23:24:46] -rw------- 1 boinc boinc 188245084 Oct 12 23:23 HITS.pool.root.1
[2025-10-12 23:24:46] -rw------- 1 boinc boinc    993280 Oct 12 23:24 result.tar.gz
23:24:47 (2944624): run_atlas exited; CPU time 13683.075148
23:24:47 (2944624): called boinc_finish(0)

</stderr_txt>
]]>

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