Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:39:04 (810648): wrapper (7.7.26015): starting
07:39:04 (810648): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 07:39:04] Arguments: --nthreads 9
[2025-10-12 07:39:04] Threads: 9
[2025-10-12 07:39:04] Checking for CVMFS
[2025-10-12 07:39:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:39:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:39:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:39:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:39:05] 2.13.2.0 1615359 90633 441280 151619 0 130 20491975 40960000 17497 16776704 0 243111658 99.665 227793691 35386 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 07:39:05] CVMFS is ok
[2025-10-12 07:39:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:39:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:39:05] Further information can be found at the LHC@home message board.
[2025-10-12 07:39:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:39:05] Checking for apptainer binary...
[2025-10-12 07:39:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:39:05] Running /usr/bin/apptainer --version
[2025-10-12 07:39:05] apptainer version 1.4.3-1.el9
[2025-10-12 07:39:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:39:05] c-206-36.aglt2.org
[2025-10-12 07:39:05] apptainer works
[2025-10-12 07:39:05] Set ATHENA_PROC_NUMBER=9
[2025-10-12 07:39:05] Set ATHENA_CORE_NUMBER=9
[2025-10-12 07:39:05] Starting ATLAS job with PandaID=6839387449
[2025-10-12 07:39:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:18:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:18:42]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6839387449/log.46676269._071340.job.log.tgz.1
[2025-10-12 09:18:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/e8/log.46676269._071340.job.log.tgz.1
[2025-10-12 09:18:42]  workdir=None
[2025-10-12 09:18:42] ]
[2025-10-12 09:18:42] 2025-10-12 13:17:57,859 | INFO     | transferring file log.46676269._071340.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6839387449/log.46676269._071340.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 09:18:42] 2025-10-12 13:17:57,859 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6839387449/log.46676269._071340.job.log.tgz.1 /tmp/boinchome/slots/2/log.46676269._071340.job
[2025-10-12 09:18:42] 2025-10-12 13:17:57,928 | INFO     | adding to output.list: log.46676269._071340.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/e8/log.46676269._071340.job.log.tg
[2025-10-12 09:18:42] 2025-10-12 13:17:57,929 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 09:18:42] 2025-10-12 13:17:57,929 | INFO     | summary of transferred files:
[2025-10-12 09:18:42] 2025-10-12 13:17:57,929 | INFO     |  -- lfn=log.46676269._071340.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 09:18:42] 2025-10-12 13:17:57,929 | INFO     | stage-out finished correctly
[2025-10-12 09:18:42] 2025-10-12 13:17:58,842 | INFO     | time since job start (5921s) is within the limit (172800.0s)
[2025-10-12 09:18:42] 2025-10-12 13:17:58,842 | INFO     | 5924s have passed since pilot start - server update state is 'RUNNING'
[2025-10-12 09:18:42] 2025-10-12 13:18:00,319 | WARNING  | process 820695 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 09:18:42] 2025-10-12 13:18:00,320 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839387449/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:18:42] 2025-10-12 13:18:00,828 | INFO     | number of running child processes to parent process 820695: 1
[2025-10-12 09:18:42] 2025-10-12 13:18:00,829 | INFO     | maximum number of monitored processes: 6
[2025-10-12 09:18:42] 2025-10-12 13:18:00,850 | INFO     | time since job start (5923s) is within the limit (172800.0s)
[2025-10-12 09:18:42] 2025-10-12 13:18:01,490 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 09:18:42] 2025-10-12 13:18:01,594 | INFO     | job 6839387449 has state=finished
[2025-10-12 09:18:42] 2025-10-12 13:18:01,594 | INFO     | preparing for final server update for job 6839387449 in state='finished'
[2025-10-12 09:18:42] 2025-10-12 13:18:01,595 | INFO     | this job has now completed (state=finished)
[2025-10-12 09:18:42] 2025-10-12 13:18:01,595 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 09:18:42] 2025-10-12 13:18:01,595 | INFO     | log transfer has been attempted: DONE
[2025-10-12 09:18:42] 2025-10-12 13:18:01,596 | INFO     | job 6839387449 has finished - writing final server update
[2025-10-12 09:18:42] 2025-10-12 13:18:01,596 | INFO     | total number of processed events: 400 (read)
[2025-10-12 09:18:42] 2025-10-12 13:18:01,607 | INFO     | executing command: lscpu
[2025-10-12 09:18:42] 2025-10-12 13:18:01,671 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 09:18:42] 2025-10-12 13:18:02,857 | INFO     | time since job start (5925s) is within the limit (172800.0s)
[2025-10-12 09:18:42] 2025-10-12 13:18:03,342 | INFO     | monitor loop #411: job 0:6839387449 is in state 'finished'
[2025-10-12 09:18:42] 2025-10-12 13:18:03,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:18:42] 2025-10-12 13:18:04,868 | INFO     | time since job start (5927s) is within the limit (172800.0s)
[2025-10-12 09:18:42] 2025-10-12 13:18:05,847 | INFO     | monitor loop #412: job 0:6839387449 is in state 'finished'
[2025-10-12 09:18:42] 2025-10-12 13:18:05,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 09:18:42] 2025-10-12 13:18:06,875 | INFO     | time since job start (5929s) is within the limit (172800.0s)
[2025-10-12 09:18:42] 2025-10-12 13:18:07,716 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 09:18:42] 2025-10-12 13:18:07,720 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3228.179656249999
[2025-10-12 09:18:42] 2025-10-12 13:18:07,731 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839387449/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:18:42] 2025-10-12 13:18:07,732 | INFO     | extracted standard info from prmon json
[2025-10-12 09:18:42] 2025-10-12 13:18:07,732 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:18:42] 2025-10-12 13:18:07,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:18:42] 2025-10-12 13:18:07,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:18:42] 2025-10-12 13:18:07,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:18:42] 2025-10-12 13:18:07,734 | INFO     | fitting pss+swap vs Time
[2025-10-12 09:18:42] 2025-10-12 13:18:07,734 | INFO     | sum of square deviations: 226041639.38888887
[2025-10-12 09:18:42] 2025-10-12 13:18:07,773 | INFO     | sum of deviations: -18919622814.833324
[2025-10-12 09:18:42] 2025-10-12 13:18:07,773 | INFO     | mean x: 1760272204.6111112
[2025-10-12 09:18:42] 2025-10-12 13:18:07,773 | INFO     | mean y: 2689530.6333333333
[2025-10-12 09:18:42] 2025-10-12 13:18:07,774 | INFO     | -- intersect: 147336987108.34937
[2025-10-12 09:18:42] 2025-10-12 13:18:07,774 | INFO     | intersect: 147336987108.34937
[2025-10-12 09:18:42] 2025-10-12 13:18:07,774 | INFO     | chi2: 0.12687701548675917
[2025-10-12 09:18:42] 2025-10-12 13:18:07,774 | INFO     | -- intersect: 147336987108.34937
[2025-10-12 09:18:42] 2025-10-12 13:18:07,797 | INFO     | current memory leak: -83.70 B/s (using 90 data points, chi2=0.13)
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | could have reported an average CPU frequency of 3221 MHz (7 samples)
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | ..............................
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . Timing measurements:
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . get job = 0 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . initial setup = 2 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . payload setup = 5 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . stage-in = 0 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . payload execution = 5892 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . stage-out = 2 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | . log creation = 0 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,798 | INFO     | ..............................
[2025-10-12 09:18:42] 2025-10-12 13:18:07,925 | INFO     | 
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | job summary report
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | --------------------------------------------------
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | PanDA job id: 6839387449
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | task id: 46676269
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | errors: (none)
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:18:42] 2025-10-12 13:18:07,926 | INFO     | pilot state: finished 
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | transexitcode: 0
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | exeerrorcode: 0
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | exeerrordiag: 
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | exitcode: 0
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | exitmsg: OK
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | cpuconsumptiontime: 33726 s
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | nevents: 400
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | neventsw: 0
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | pid: 820695
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | pgrp: 820695
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | corecount: 9
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | event service: False
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 5901: 2375990, 5902: 2375989, 5905: 2385171, 5909: 2385227, 5915: 2385421}
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | --------------------------------------------------
[2025-10-12 09:18:42] 2025-10-12 13:18:07,927 | INFO     | 
[2025-10-12 09:18:42] 2025-10-12 13:18:07,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 09:18:42] 2025-10-12 13:18:07,999 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | job 6839387449 has completed (purged errors)
[2025-10-12 09:18:42] 2025-10-12 13:18:08,001 | INFO     | overall cleanup function is called
[2025-10-12 09:18:42] 2025-10-12 13:18:09,044 | INFO     | --- collectZombieJob: --- 10, [820695]
[2025-10-12 09:18:42] 2025-10-12 13:18:09,044 | INFO     | zombie collector waiting for pid 820695
[2025-10-12 09:18:42] 2025-10-12 13:18:09,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:18:42] 2025-10-12 13:18:09,045 | INFO     | collected zombie processes
[2025-10-12 09:18:42] 2025-10-12 13:18:09,045 | INFO     | will attempt to kill all subprocesses of pid=820695
[2025-10-12 09:18:42] 2025-10-12 13:18:09,528 | INFO     | process IDs to be killed: [820695] (in reverse order)
[2025-10-12 09:18:42] 2025-10-12 13:18:09,635 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:18:42] 2025-10-12 13:18:09,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:18:42] 2025-10-12 13:18:09,648 | INFO     | did not find any defunct processes belonging to 820695
[2025-10-12 09:18:42] 2025-10-12 13:18:09,662 | INFO     | did not find any defunct processes belonging to 820695
[2025-10-12 09:18:42] 2025-10-12 13:18:09,662 | INFO     | ready for new job
[2025-10-12 09:18:42] 2025-10-12 13:18:09,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:18:42] 2025-10-12 13:18:09,666 | INFO     | ***************************************
[2025-10-12 09:18:42] 2025-10-12 13:18:09,705 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:18:42] 2025-10-12 13:18:09,705 | INFO     | ***************************************
[2025-10-12 09:18:42] 2025-10-12 13:18:09,705 | INFO     | 
[2025-10-12 09:18:42] 2025-10-12 13:18:09,733 | INFO     | architecture information:
[2025-10-12 09:18:42] 2025-10-12 13:18:09,735 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:18:42] 2025-10-12 13:18:09,758 | INFO     | cat /etc/os-release:
[2025-10-12 09:18:42] NAME="CentOS Linux"
[2025-10-12 09:18:42] VERSION="7 (Core)"
[2025-10-12 09:18:42] ID="centos"
[2025-10-12 09:18:42] ID_LIKE="rhel fedora"
[2025-10-12 09:18:42] VERSION_ID="7"
[2025-10-12 09:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:18:42] ANSI_COLOR="0;31"
[2025-10-12 09:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:18:42] HOME_URL="https://www.centos.org/"
[2025-10-12 09:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:18:42] 
[2025-10-12 09:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:18:42] 
[2025-10-12 09:18:42] 2025-10-12 13:18:09,759 | INFO     | ***************************************
[2025-10-12 09:18:42] 2025-10-12 13:18:10,262 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 09:18:42] 2025-10-12 13:18:10,303 | INFO     | sufficient remaining disk space (85053145088 B)
[2025-10-12 09:18:42] 2025-10-12 13:18:10,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:18:42] 2025-10-12 13:18:10,304 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:18:42] 2025-10-12 13:18:10,304 | INFO     | update_server=False
[2025-10-12 09:18:42] 2025-10-12 13:18:10,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:18:42] 2025-10-12 13:18:10,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:18:42] 2025-10-12 13:18:10,304 | INFO     | aborting loop
[2025-10-12 09:18:42] 2025-10-12 13:18:10,653 | INFO     | all payload control threads have been joined
[2025-10-12 09:18:42] 2025-10-12 13:18:11,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:18:42] 2025-10-12 13:18:11,310 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:11,310 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:11,388 | INFO     | all data control threads have been joined
[2025-10-12 09:18:42] 2025-10-12 13:18:11,526 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:11,661 | INFO     | [payload] control thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:11,662 | INFO     | all job control threads have been joined
[2025-10-12 09:18:42] 2025-10-12 13:18:12,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:18:42] 2025-10-12 13:18:12,381 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,387 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,395 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,406 | INFO     | [data] control thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,409 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,427 | INFO     | [job] validate thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,455 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,667 | INFO     | [job] control thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:12,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:18:42] 2025-10-12 13:18:13,050 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:13,951 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:16,138 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:21,268 | INFO     | job.realtimelogging is not enabled
[2025-10-12 09:18:42] 2025-10-12 13:18:22,273 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:18:42] 2025-10-12 13:18:26,606 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:18:42] 2025-10-12 13:18:27,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139729801029440)>', '<ExcThread(monitor, started 139729160886016)>']
[2025-10-12 09:18:42] 2025-10-12 13:18:32,549 | INFO     | all workflow threads have been joined
[2025-10-12 09:18:42] 2025-10-12 13:18:32,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:18:42] 2025-10-12 13:18:32,549 | INFO     | traces error code: 0
[2025-10-12 09:18:42] 2025-10-12 13:18:32,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:18:42] 2025-10-12 13:18:40,894 | INFO     | PID=814301 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 09:18:42] 2025-10-12 13:18:40,895 | INFO     | .. there are 18 such processes running
[2025-10-12 09:18:42] 2025-10-12 13:18:40,895 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:18:42] 2025-10-12 13:18:40,895 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:18:42] 2025-10-12 13:18:40,895 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:18:42] 2025-10-12 13:18:40,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:18:42] 2025-10-12 13:18:40,895 | INFO     | [monitor] control thread has ended
[2025-10-12 09:18:42] 2025-10-12 13:18:41,835 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:18:42] 2025-10-12 13:18:41,838 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:18:42] 2025-10-12 13:18:41,841 [wrapper] pilotpid: 814301
[2025-10-12 09:18:42] 2025-10-12 13:18:41,844 [wrapper] Pilot exit status: 0
[2025-10-12 09:18:42] 2025-10-12 13:18:41,866 [wrapper] pandaids: 6839387449
[2025-10-12 09:18:42] 2025-10-12 13:18:41,939 [wrapper] cleanup supervisor_pilot 1078570 814302
[2025-10-12 09:18:42] 2025-10-12 13:18:41,944 [wrapper] Test setup, not cleaning
[2025-10-12 09:18:42] 2025-10-12 13:18:41,948 [wrapper] apfmon messages muted
[2025-10-12 09:18:42] 2025-10-12 13:18:41,952 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:18:42] 2025-10-12 13:18:41,956 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:18:42]  *** Error codes and diagnostics ***
[2025-10-12 09:18:42]     "exeErrorCode": 0,
[2025-10-12 09:18:42]     "exeErrorDiag": "",
[2025-10-12 09:18:42]     "pilotErrorCode": 0,
[2025-10-12 09:18:42]     "pilotErrorDiag": "",
[2025-10-12 09:18:42]  *** Listing of results directory ***
[2025-10-12 09:18:42] total 411892
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 00:38 pilot3.tar.gz
[2025-10-12 09:18:42] -rwx------. 1 boincer umatlas     36292 Oct 12 00:40 runpilot2-wrapper.sh
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 00:40 queuedata.json
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas       100 Oct 12 07:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:18:42] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 07:39 run_atlas
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas       105 Oct 12 07:39 job.xml
[2025-10-12 09:18:42] -rw-r--r--. 2 boincer umatlas 222319885 Oct 12 07:39 EVNT.46676267._004301.pool.root.1
[2025-10-12 09:18:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:39 start_atlas.sh
[2025-10-12 09:18:42] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 07:39 shared
[2025-10-12 09:18:42] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 07:39 input.tar.gz
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas         0 Oct 12 07:39 boinc_lockfile
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 07:39 pandaJob.out
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas    975520 Oct 12 07:39 agis_schedconf.cvmfs.json
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas   1560580 Oct 12 07:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:18:42] drwx------. 5 boincer umatlas      4096 Oct 12 07:39 pilot3
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas      6900 Oct 12 09:11 init_data.xml
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas 193151947 Oct 12 09:16 HITS.46676269._071340.pool.root.1
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas       529 Oct 12 09:16 boinc_task_state.xml
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas      1035 Oct 12 09:17 memory_monitor_summary.json
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas    361768 Oct 12 09:17 log.46676269._071340.job.log.tgz.1
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas        95 Oct 12 09:17 pilot_heartbeat.json
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas      7782 Oct 12 09:18 heartbeat.json
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 09:18 boinc_mmap_file
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas        27 Oct 12 09:18 wrapper_checkpoint.txt
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas       822 Oct 12 09:18 pilotlog.txt
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas    835674 Oct 12 09:18 log.46676269._071340.job.log.1
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas       357 Oct 12 09:18 output.list
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas       620 Oct 12 09:18 runtime_log
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas   1218560 Oct 12 09:18 result.tar.gz
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 09:18 runtime_log.err
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas       652 Oct 12 09:18 7mpKDm032R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8diNDm0RbdKm.diag
[2025-10-12 09:18:42] -rw-r--r--. 1 boincer umatlas     22305 Oct 12 09:18 stderr.txt
[2025-10-12 09:18:42] HITS file was successfully produced:
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas 193151947 Oct 12 09:16 shared/HITS.pool.root.1
[2025-10-12 09:18:42]  *** Contents of shared directory: ***
[2025-10-12 09:18:42] total 407516
[2025-10-12 09:18:42] -rw-r--r--. 2 boincer umatlas 222319885 Oct 12 07:39 ATLAS.root_0
[2025-10-12 09:18:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 07:39 start_atlas.sh
[2025-10-12 09:18:42] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 07:39 input.tar.gz
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas 193151947 Oct 12 09:16 HITS.pool.root.1
[2025-10-12 09:18:42] -rw-------. 1 boincer umatlas   1218560 Oct 12 09:18 result.tar.gz
09:18:43 (810648): run_atlas exited; CPU time 33700.872124
09:18:43 (810648): called boinc_finish(0)

</stderr_txt>
]]>

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