Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:00:37 (11494): wrapper (7.7.26015): starting
06:00:37 (11494): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 06:00:37] Arguments: --nthreads 8
[2025-10-12 06:00:37] Threads: 8
[2025-10-12 06:00:37] Checking for CVMFS
[2025-10-12 06:00:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:00:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:00:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:00:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:00:38] 2.11.2.0 1598 216055 129884 151615 2 188 10234731 20275200 917 130560 1 221139446 99.992 11697877 11171 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 06:00:38] CVMFS is ok
[2025-10-12 06:00:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:00:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:00:38] Further information can be found at the LHC@home message board.
[2025-10-12 06:00:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:00:38] Checking for apptainer binary...
[2025-10-12 06:00:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:00:38] Running /usr/bin/apptainer --version
[2025-10-12 06:00:38] apptainer version 1.3.2-1.el7
[2025-10-12 06:00:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:00:38] c-205-36.aglt2.org
[2025-10-12 06:00:38] apptainer works
[2025-10-12 06:00:38] Set ATHENA_PROC_NUMBER=8
[2025-10-12 06:00:38] Set ATHENA_CORE_NUMBER=8
[2025-10-12 06:00:38] Starting ATLAS job with PandaID=6839385152
[2025-10-12 06:00:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:11:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:11:02]  replicas=None
[2025-10-12 07:11:02]  scope=mc23_13p6TeV
[2025-10-12 07:11:02]  status=None
[2025-10-12 07:11:02]  status_code=0
[2025-10-12 07:11:02]  storage_token=
[2025-10-12 07:11:02]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839385152/log.46676269._070396.job.log.tgz.1
[2025-10-12 07:11:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/e5/log.46676269._070396.job.log.tgz.1
[2025-10-12 07:11:02]  workdir=None
[2025-10-12 07:11:02] ]
[2025-10-12 07:11:02] 2025-10-12 11:09:49,581 | INFO     | transferring file log.46676269._070396.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839385152/log.46676269._070396.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 07:11:02] 2025-10-12 11:09:49,581 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839385152/log.46676269._070396.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._070396.job
[2025-10-12 07:11:02] 2025-10-12 11:09:49,603 | INFO     | adding to output.list: log.46676269._070396.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/e5/log.46676269._070396.job.log.tg
[2025-10-12 07:11:02] 2025-10-12 11:09:49,603 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 07:11:02] 2025-10-12 11:09:49,603 | INFO     | summary of transferred files:
[2025-10-12 07:11:02] 2025-10-12 11:09:49,603 | INFO     |  -- lfn=log.46676269._070396.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 07:11:02] 2025-10-12 11:09:49,604 | INFO     | stage-out finished correctly
[2025-10-12 07:11:02] 2025-10-12 11:09:50,785 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 07:11:02] 2025-10-12 11:09:50,871 | INFO     | job 6839385152 has state=finished
[2025-10-12 07:11:02] 2025-10-12 11:09:50,871 | INFO     | preparing for final server update for job 6839385152 in state='finished'
[2025-10-12 07:11:02] 2025-10-12 11:09:50,872 | INFO     | this job has now completed (state=finished)
[2025-10-12 07:11:02] 2025-10-12 11:09:50,872 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 07:11:02] 2025-10-12 11:09:50,872 | INFO     | log transfer has been attempted: DONE
[2025-10-12 07:11:02] 2025-10-12 11:09:50,873 | INFO     | job 6839385152 has finished - writing final server update
[2025-10-12 07:11:02] 2025-10-12 11:09:50,873 | INFO     | total number of processed events: 400 (read)
[2025-10-12 07:11:02] 2025-10-12 11:09:50,874 | INFO     | executing command: lscpu
[2025-10-12 07:11:02] 2025-10-12 11:09:50,906 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 07:11:02] 2025-10-12 11:09:51,362 | INFO     | time since job start (4141s) is within the limit (172800.0s)
[2025-10-12 07:11:02] 2025-10-12 11:09:53,368 | INFO     | time since job start (4143s) is within the limit (172800.0s)
[2025-10-12 07:11:02] 2025-10-12 11:09:54,520 | INFO     | PID=15163 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 07:11:02] 2025-10-12 11:09:54,521 | INFO     | .. there are 2 such processes running
[2025-10-12 07:11:02] 2025-10-12 11:09:55,120 | WARNING  | process 21596 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 07:11:02] 2025-10-12 11:09:55,121 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839385152/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,164 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 07:11:02] 2025-10-12 11:09:55,174 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2088.5005
[2025-10-12 07:11:02] 2025-10-12 11:09:55,178 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839385152/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,179 | INFO     | extracted standard info from prmon json
[2025-10-12 07:11:02] 2025-10-12 11:09:55,179 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:11:02] 2025-10-12 11:09:55,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:11:02] 2025-10-12 11:09:55,180 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:11:02] 2025-10-12 11:09:55,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:11:02] 2025-10-12 11:09:55,182 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:11:02] 2025-10-12 11:09:55,182 | INFO     | sum of square deviations: 70364110.0
[2025-10-12 07:11:02] 2025-10-12 11:09:55,183 | INFO     | sum of deviations: -428086714.99999994
[2025-10-12 07:11:02] 2025-10-12 11:09:55,183 | INFO     | mean x: 1760265411.0
[2025-10-12 07:11:02] 2025-10-12 11:09:55,183 | INFO     | mean y: 2529791.7377049183
[2025-10-12 07:11:02] 2025-10-12 11:09:55,184 | INFO     | -- intersect: 10711771155.312328
[2025-10-12 07:11:02] 2025-10-12 11:09:55,184 | INFO     | intersect: 10711771155.312328
[2025-10-12 07:11:02] 2025-10-12 11:09:55,184 | INFO     | chi2: 0.0029371212690959617
[2025-10-12 07:11:02] 2025-10-12 11:09:55,184 | INFO     | -- intersect: 10711771155.312328
[2025-10-12 07:11:02] 2025-10-12 11:09:55,185 | INFO     | current memory leak: -6.08 B/s (using 61 data points, chi2=0.00)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,185 | INFO     | could have reported an average CPU frequency of 2245 MHz (6 samples)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,185 | INFO     | ..............................
[2025-10-12 07:11:02] 2025-10-12 11:09:55,186 | INFO     | . Timing measurements:
[2025-10-12 07:11:02] 2025-10-12 11:09:55,186 | INFO     | . get job = 0 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,186 | INFO     | . initial setup = 2 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,186 | INFO     | . payload setup = 6 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,186 | INFO     | . stage-in = 0 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,186 | INFO     | . payload execution = 4113 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,187 | INFO     | . stage-out = 0 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,187 | INFO     | . log creation = 0 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,187 | INFO     | ..............................
[2025-10-12 07:11:02] 2025-10-12 11:09:55,266 | INFO     | 
[2025-10-12 07:11:02] 2025-10-12 11:09:55,266 | INFO     | job summary report
[2025-10-12 07:11:02] 2025-10-12 11:09:55,266 | INFO     | --------------------------------------------------
[2025-10-12 07:11:02] 2025-10-12 11:09:55,266 | INFO     | PanDA job id: 6839385152
[2025-10-12 07:11:02] 2025-10-12 11:09:55,267 | INFO     | task id: 46676269
[2025-10-12 07:11:02] 2025-10-12 11:09:55,267 | INFO     | errors: (none)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,267 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:11:02] 2025-10-12 11:09:55,267 | INFO     | pilot state: finished 
[2025-10-12 07:11:02] 2025-10-12 11:09:55,267 | INFO     | transexitcode: 0
[2025-10-12 07:11:02] 2025-10-12 11:09:55,268 | INFO     | exeerrorcode: 0
[2025-10-12 07:11:02] 2025-10-12 11:09:55,268 | INFO     | exeerrordiag: 
[2025-10-12 07:11:02] 2025-10-12 11:09:55,268 | INFO     | exitcode: 0
[2025-10-12 07:11:02] 2025-10-12 11:09:55,268 | INFO     | exitmsg: OK
[2025-10-12 07:11:02] 2025-10-12 11:09:55,268 | INFO     | cpuconsumptiontime: 30572 s
[2025-10-12 07:11:02] 2025-10-12 11:09:55,269 | INFO     | nevents: 400
[2025-10-12 07:11:02] 2025-10-12 11:09:55,269 | INFO     | neventsw: 0
[2025-10-12 07:11:02] 2025-10-12 11:09:55,269 | INFO     | pid: 21596
[2025-10-12 07:11:02] 2025-10-12 11:09:55,269 | INFO     | pgrp: 21596
[2025-10-12 07:11:02] 2025-10-12 11:09:55,269 | INFO     | corecount: 8
[2025-10-12 07:11:02] 2025-10-12 11:09:55,270 | INFO     | event service: False
[2025-10-12 07:11:02] 2025-10-12 11:09:55,270 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4123: 2384179, 4125: 2384179, 4129: 2384373}
[2025-10-12 07:11:02] 2025-10-12 11:09:55,270 | INFO     | --------------------------------------------------
[2025-10-12 07:11:02] 2025-10-12 11:09:55,270 | INFO     | 
[2025-10-12 07:11:02] 2025-10-12 11:09:55,271 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 07:11:02] 2025-10-12 11:09:55,294 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,295 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,295 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,295 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,295 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,297 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,297 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,297 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,297 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,297 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,298 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,298 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:11:02] 2025-10-12 11:09:55,299 | INFO     | job 6839385152 has completed (purged errors)
[2025-10-12 07:11:02] 2025-10-12 11:09:55,299 | INFO     | overall cleanup function is called
[2025-10-12 07:11:02] 2025-10-12 11:09:55,341 | INFO     | number of running child processes to parent process 21596: 1
[2025-10-12 07:11:02] 2025-10-12 11:09:55,342 | INFO     | maximum number of monitored processes: 6
[2025-10-12 07:11:02] 2025-10-12 11:09:55,342 | INFO     | aborting job monitoring since job object (job id=6839385152) has expired
[2025-10-12 07:11:02] 2025-10-12 11:09:56,308 | INFO     | --- collectZombieJob: --- 10, [21596]
[2025-10-12 07:11:02] 2025-10-12 11:09:56,309 | INFO     | zombie collector waiting for pid 21596
[2025-10-12 07:11:02] 2025-10-12 11:09:56,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:11:02] 2025-10-12 11:09:56,309 | INFO     | collected zombie processes
[2025-10-12 07:11:02] 2025-10-12 11:09:56,309 | INFO     | will attempt to kill all subprocesses of pid=21596
[2025-10-12 07:11:02] 2025-10-12 11:09:56,428 | INFO     | process IDs to be killed: [21596] (in reverse order)
[2025-10-12 07:11:02] 2025-10-12 11:09:56,488 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:11:02] 2025-10-12 11:09:56,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:11:02] 2025-10-12 11:09:56,493 | INFO     | did not find any defunct processes belonging to 21596
[2025-10-12 07:11:02] 2025-10-12 11:09:56,496 | INFO     | did not find any defunct processes belonging to 21596
[2025-10-12 07:11:02] 2025-10-12 11:09:56,496 | INFO     | ready for new job
[2025-10-12 07:11:02] 2025-10-12 11:09:56,497 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:11:02] 2025-10-12 11:09:56,499 | INFO     | ***************************************
[2025-10-12 07:11:02] 2025-10-12 11:09:56,499 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:11:02] 2025-10-12 11:09:56,500 | INFO     | ***************************************
[2025-10-12 07:11:02] 2025-10-12 11:09:56,500 | INFO     | 
[2025-10-12 07:11:02] 2025-10-12 11:09:56,501 | INFO     | architecture information:
[2025-10-12 07:11:02] 2025-10-12 11:09:56,501 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:11:02] 2025-10-12 11:09:56,518 | INFO     | cat /etc/os-release:
[2025-10-12 07:11:02] NAME="CentOS Linux"
[2025-10-12 07:11:02] VERSION="7 (Core)"
[2025-10-12 07:11:02] ID="centos"
[2025-10-12 07:11:02] ID_LIKE="rhel fedora"
[2025-10-12 07:11:02] VERSION_ID="7"
[2025-10-12 07:11:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:11:02] ANSI_COLOR="0;31"
[2025-10-12 07:11:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:11:02] HOME_URL="https://www.centos.org/"
[2025-10-12 07:11:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:11:02] 
[2025-10-12 07:11:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:11:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:11:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:11:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:11:02] 
[2025-10-12 07:11:02] 2025-10-12 11:09:56,518 | INFO     | ***************************************
[2025-10-12 07:11:02] 2025-10-12 11:09:57,021 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 07:11:02] 2025-10-12 11:09:57,040 | INFO     | sufficient remaining disk space (32745979904 B)
[2025-10-12 07:11:02] 2025-10-12 11:09:57,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:11:02] 2025-10-12 11:09:57,041 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:11:02] 2025-10-12 11:09:57,041 | INFO     | update_server=False
[2025-10-12 07:11:02] 2025-10-12 11:09:57,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:11:02] 2025-10-12 11:09:57,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:11:02] 2025-10-12 11:09:57,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:11:02] 2025-10-12 11:09:57,042 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:11:02] 2025-10-12 11:09:57,043 | INFO     | aborting loop
[2025-10-12 07:11:02] 2025-10-12 11:09:57,163 | INFO     | all payload control threads have been joined
[2025-10-12 07:11:02] 2025-10-12 11:09:57,622 | INFO     | all data control threads have been joined
[2025-10-12 07:11:02] 2025-10-12 11:09:57,665 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:11:02] 2025-10-12 11:09:58,043 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,047 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,048 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,169 | INFO     | [payload] control thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,175 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,418 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,596 | INFO     | all job control threads have been joined
[2025-10-12 07:11:02] 2025-10-12 11:09:58,628 | INFO     | [data] control thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:58,818 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:59,091 | INFO     | [job] validate thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:59,271 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:59,385 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:59,506 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:59,601 | INFO     | [job] control thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:09:59,671 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:10:01,049 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:10:07,399 | INFO     | job.realtimelogging is not enabled
[2025-10-12 07:11:02] 2025-10-12 11:10:08,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:11:02] 2025-10-12 11:10:26,749 | INFO     | PID=15163 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 07:11:02] 2025-10-12 11:10:26,749 | INFO     | .. there are 2 such processes running
[2025-10-12 07:11:02] 2025-10-12 11:10:26,749 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:11:02] 2025-10-12 11:10:26,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:11:02] 2025-10-12 11:10:26,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:11:02] 2025-10-12 11:10:56,866 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:11:02] 2025-10-12 11:10:57,190 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139954002335552)>', '<ExcThread(monitor, started 139953581319936)>']
[2025-10-12 07:11:02] 2025-10-12 11:10:57,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:11:02] 2025-10-12 11:10:57,895 | INFO     | [monitor] control thread has ended
[2025-10-12 07:11:02] 2025-10-12 11:11:02,215 | INFO     | all workflow threads have been joined
[2025-10-12 07:11:02] 2025-10-12 11:11:02,215 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:11:02] 2025-10-12 11:11:02,216 | INFO     | traces error code: 0
[2025-10-12 07:11:02] 2025-10-12 11:11:02,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:11:02] 2025-10-12 11:11:02,333 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:11:02] 2025-10-12 11:11:02,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:11:02] 2025-10-12 11:11:02,340 [wrapper] pilotpid: 15163
[2025-10-12 07:11:02] 2025-10-12 11:11:02,344 [wrapper] Pilot exit status: 0
[2025-10-12 07:11:02] 2025-10-12 11:11:02,356 [wrapper] pandaids: 6839385152
[2025-10-12 07:11:02] 2025-10-12 11:11:02,399 [wrapper] cleanup supervisor_pilot  1472 15164
[2025-10-12 07:11:02] 2025-10-12 11:11:02,403 [wrapper] Test setup, not cleaning
[2025-10-12 07:11:02] 2025-10-12 11:11:02,406 [wrapper] apfmon messages muted
[2025-10-12 07:11:02] 2025-10-12 11:11:02,410 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:11:02] 2025-10-12 11:11:02,413 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:11:02]  *** Error codes and diagnostics ***
[2025-10-12 07:11:02]     "exeErrorCode": 0,
[2025-10-12 07:11:02]     "exeErrorDiag": "",
[2025-10-12 07:11:02]     "pilotErrorCode": 0,
[2025-10-12 07:11:02]     "pilotErrorDiag": "",
[2025-10-12 07:11:02]  *** Listing of results directory ***
[2025-10-12 07:11:02] total 420752
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 23:35 pilot3.tar.gz
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:03 queuedata.json
[2025-10-12 07:11:02] -rwx------ 1 boincer umatlas     36292 Oct 12 00:03 runpilot2-wrapper.sh
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas       100 Oct 12 06:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:11:02] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 06:00 run_atlas
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas       105 Oct 12 06:00 job.xml
[2025-10-12 07:11:02] -rw-r--r-- 2 boincer umatlas 221715479 Oct 12 06:00 EVNT.46676267._003228.pool.root.1
[2025-10-12 07:11:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 06:00 start_atlas.sh
[2025-10-12 07:11:02] drwxrwx--x 2 boincer umatlas      4096 Oct 12 06:00 shared
[2025-10-12 07:11:02] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 06:00 input.tar.gz
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas         0 Oct 12 06:00 boinc_lockfile
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 06:00 pandaJob.out
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas    975536 Oct 12 06:00 agis_schedconf.cvmfs.json
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas   1560580 Oct 12 06:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:11:02] drwx------ 5 boincer umatlas      4096 Oct 12 06:00 pilot3
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 07:03 init_data.xml
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas 203341320 Oct 12 07:09 HITS.46676269._070396.pool.root.1
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas       529 Oct 12 07:09 boinc_task_state.xml
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas        95 Oct 12 07:09 pilot_heartbeat.json
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas      1048 Oct 12 07:09 memory_monitor_summary.json
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas    328765 Oct 12 07:09 log.46676269._070396.job.log.tgz.1
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas      7840 Oct 12 07:09 heartbeat.json
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas        27 Oct 12 07:10 wrapper_checkpoint.txt
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 07:10 boinc_mmap_file
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas      4893 Oct 12 07:11 pilotlog.txt
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas    619286 Oct 12 07:11 log.46676269._070396.job.log.1
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas       357 Oct 12 07:11 output.list
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas       620 Oct 12 07:11 runtime_log
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas    962560 Oct 12 07:11 result.tar.gz
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 07:11 runtime_log.err
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas       658 Oct 12 07:11 GX9NDmSU2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNViNDmXP9mNn.diag
[2025-10-12 07:11:02] -rw-r--r-- 1 boincer umatlas     21852 Oct 12 07:11 stderr.txt
[2025-10-12 07:11:02] HITS file was successfully produced:
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas 203341320 Oct 12 07:09 shared/HITS.pool.root.1
[2025-10-12 07:11:02]  *** Contents of shared directory: ***
[2025-10-12 07:11:02] total 416616
[2025-10-12 07:11:02] -rw-r--r-- 2 boincer umatlas 221715479 Oct 12 06:00 ATLAS.root_0
[2025-10-12 07:11:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 06:00 start_atlas.sh
[2025-10-12 07:11:02] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 06:00 input.tar.gz
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas 203341320 Oct 12 07:09 HITS.pool.root.1
[2025-10-12 07:11:02] -rw------- 1 boincer umatlas    962560 Oct 12 07:11 result.tar.gz
07:11:04 (11494): run_atlas exited; CPU time 30578.483395
07:11:04 (11494): called boinc_finish(0)

</stderr_txt>
]]>

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