Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:53:10 (3443380): wrapper (7.7.26015): starting
21:53:10 (3443380): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 21:53:10] Arguments: --nthreads 4
[2025-10-12 21:53:10] Threads: 4
[2025-10-12 21:53:10] Checking for CVMFS
[2025-10-12 21:53:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:53:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:53:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:53:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:53:11] 2.9.2.0 1857307 4587 96992 151635 2 57 29746053 36864000 0 130560 0 4125521 99.992 160145 925 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:53:11] CVMFS is ok
[2025-10-12 21:53:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:53:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:53:11] Further information can be found at the LHC@home message board.
[2025-10-12 21:53:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:53:11] Checking for apptainer binary...
[2025-10-12 21:53:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:53:11] Running /usr/bin/apptainer --version
[2025-10-12 21:53:11] apptainer version 1.4.1-1.1
[2025-10-12 21:53:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:53:11] thA319a
[2025-10-12 21:53:11] apptainer works
[2025-10-12 21:53:11] Set ATHENA_PROC_NUMBER=4
[2025-10-12 21:53:11] Set ATHENA_CORE_NUMBER=4
[2025-10-12 21:53:11] Starting ATLAS job with PandaID=6839387498
[2025-10-12 21:53:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:02:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:02:30] 2025-10-12 21:01:59,510 | INFO     | will attempt to kill all subprocesses of pid=3453724
[2025-10-12 23:02:30] 2025-10-12 21:01:59,555 | INFO     | process IDs to be killed: [3453724] (in reverse order)
[2025-10-12 23:02:30] 2025-10-12 21:01:59,588 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:02:30] 2025-10-12 21:01:59,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:02:30] 2025-10-12 21:01:59,590 | INFO     | did not find any defunct processes belonging to 3453724
[2025-10-12 23:02:30] 2025-10-12 21:01:59,592 | INFO     | did not find any defunct processes belonging to 3453724
[2025-10-12 23:02:30] 2025-10-12 21:01:59,592 | INFO     | ready for new job
[2025-10-12 23:02:30] 2025-10-12 21:01:59,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:02:30] 2025-10-12 21:01:59,592 | INFO     | ***************************************
[2025-10-12 23:02:30] 2025-10-12 21:01:59,593 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:02:30] 2025-10-12 21:01:59,593 | INFO     | ***************************************
[2025-10-12 23:02:30] 2025-10-12 21:01:59,593 | INFO     | 
[2025-10-12 23:02:30] 2025-10-12 21:01:59,593 | INFO     | architecture information:
[2025-10-12 23:02:30] 2025-10-12 21:01:59,593 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:02:30] 2025-10-12 21:01:59,607 | INFO     | cat /etc/os-release:
[2025-10-12 23:02:30] NAME="CentOS Linux"
[2025-10-12 23:02:30] VERSION="7 (Core)"
[2025-10-12 23:02:30] ID="centos"
[2025-10-12 23:02:30] ID_LIKE="rhel fedora"
[2025-10-12 23:02:30] VERSION_ID="7"
[2025-10-12 23:02:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:02:30] ANSI_COLOR="0;31"
[2025-10-12 23:02:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:02:30] HOME_URL="https://www.centos.org/"
[2025-10-12 23:02:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:02:30] 
[2025-10-12 23:02:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:02:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:02:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:02:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:02:30] 
[2025-10-12 23:02:30] 2025-10-12 21:01:59,607 | INFO     | ***************************************
[2025-10-12 23:02:30] 2025-10-12 21:02:00,111 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 23:02:30] 2025-10-12 21:02:00,128 | INFO     | sufficient remaining disk space (329864183808 B)
[2025-10-12 23:02:30] 2025-10-12 21:02:00,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:02:30] 2025-10-12 21:02:00,129 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:02:30] 2025-10-12 21:02:00,129 | INFO     | update_server=False
[2025-10-12 23:02:30] 2025-10-12 21:02:00,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:02:30] 2025-10-12 21:02:00,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:02:30] 2025-10-12 21:02:00,335 | INFO     | all data control threads have been joined
[2025-10-12 23:02:30] 2025-10-12 21:02:00,368 | INFO     | all job control threads have been joined
[2025-10-12 23:02:30] 2025-10-12 21:02:00,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:02:30] 2025-10-12 21:02:00,483 | INFO     | aborting loop
[2025-10-12 23:02:30] 2025-10-12 21:02:00,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:02:30] 2025-10-12 21:02:01,082 | INFO     | all payload control threads have been joined
[2025-10-12 23:02:30] 2025-10-12 21:02:01,134 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,135 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,340 | INFO     | [data] control thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,342 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,366 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,374 | INFO     | [job] control thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,488 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:01,633 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:02,087 | INFO     | [payload] control thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:02,177 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:02,215 | INFO     | [job] validate thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:02,247 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:02,350 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:02,864 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:03,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:02:30] 2025-10-12 21:02:07,054 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:10,569 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:02:30] 2025-10-12 21:02:11,575 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:02:30] 2025-10-12 21:02:24,072 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:02:30] 2025-10-12 21:02:24,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140271568471872)>', '<ExcThread(monitor, started 140270930745088)>']
[2025-10-12 23:02:30] 2025-10-12 21:02:29,977 | INFO     | all workflow threads have been joined
[2025-10-12 23:02:30] 2025-10-12 21:02:29,977 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:02:30] 2025-10-12 21:02:29,977 | INFO     | traces error code: 0
[2025-10-12 23:02:30] 2025-10-12 21:02:29,977 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:02:30] 2025-10-12 21:02:30,434 | INFO     | PID=3447162 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:02:30] 2025-10-12 21:02:30,434 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:02:30] 2025-10-12 21:02:30,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:02:30] 2025-10-12 21:02:30,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:02:30] 2025-10-12 21:02:30,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:02:30] 2025-10-12 21:02:30,434 | INFO     | [monitor] control thread has ended
[2025-10-12 23:02:30] 2025-10-12 21:02:30,510 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:02:30] 2025-10-12 21:02:30,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:02:30] 2025-10-12 21:02:30,518 [wrapper] pilotpid: 3447162
[2025-10-12 23:02:30] 2025-10-12 21:02:30,522 [wrapper] Pilot exit status: 0
[2025-10-12 23:02:30] 2025-10-12 21:02:30,535 [wrapper] pandaids: 6839387498
[2025-10-12 23:02:30] 2025-10-12 21:02:30,556 [wrapper] cleanup supervisor_pilot 3463440 3447163
[2025-10-12 23:02:30] 2025-10-12 21:02:30,560 [wrapper] Test setup, not cleaning
[2025-10-12 23:02:30] 2025-10-12 21:02:30,564 [wrapper] apfmon messages muted
[2025-10-12 23:02:30] 2025-10-12 21:02:30,568 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:02:30] 2025-10-12 21:02:30,572 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:02:30]  *** Error codes and diagnostics ***
[2025-10-12 23:02:30]     "exeErrorCode": 0,
[2025-10-12 23:02:30]     "exeErrorDiag": "",
[2025-10-12 23:02:30]     "pilotErrorCode": 0,
[2025-10-12 23:02:30]     "pilotErrorDiag": "",
[2025-10-12 23:02:30]  *** Listing of results directory ***
[2025-10-12 23:02:30] total 407216
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 23:02:30] -rwx------ 1 boinc boinc     36292 Oct 12 06:48 runpilot2-wrapper.sh
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:48 queuedata.json
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:02:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:53 run_atlas
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:53 job.xml
[2025-10-12 23:02:30] -rw-r--r-- 2 boinc boinc 222029285 Oct 12 21:53 EVNT.46676267._004303.pool.root.1
[2025-10-12 23:02:30] -rw-r--r-- 2 boinc boinc    569676 Oct 12 21:53 input.tar.gz
[2025-10-12 23:02:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:53 start_atlas.sh
[2025-10-12 23:02:30] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:53 shared
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:53 boinc_setup_complete
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc      6367 Oct 12 21:53 init_data.xml
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:53 boinc_lockfile
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:53 pandaJob.out
[2025-10-12 23:02:30] -rw------- 1 boinc boinc    975536 Oct 12 21:53 agis_schedconf.cvmfs.json
[2025-10-12 23:02:30] -rw------- 1 boinc boinc   1560580 Oct 12 21:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:02:30] drwx------ 5 boinc boinc      4096 Oct 12 21:53 pilot3
[2025-10-12 23:02:30] -rw------- 1 boinc boinc 189324828 Oct 12 23:01 HITS.46676269._071389.pool.root.1
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:01 boinc_task_state.xml
[2025-10-12 23:02:30] -rw------- 1 boinc boinc        95 Oct 12 23:01 pilot_heartbeat.json
[2025-10-12 23:02:30] -rw------- 1 boinc boinc      1022 Oct 12 23:01 memory_monitor_summary.json
[2025-10-12 23:02:30] -rw------- 1 boinc boinc    257239 Oct 12 23:01 log.46676269._071389.job.log.tgz.1
[2025-10-12 23:02:30] -rw------- 1 boinc boinc      7766 Oct 12 23:01 heartbeat.json
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:02 wrapper_checkpoint.txt
[2025-10-12 23:02:30] -rw------- 1 boinc boinc       747 Oct 12 23:02 pilotlog.txt
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:02 boinc_mmap_file
[2025-10-12 23:02:30] -rw------- 1 boinc boinc    614544 Oct 12 23:02 log.46676269._071389.job.log.1
[2025-10-12 23:02:30] -rw------- 1 boinc boinc       357 Oct 12 23:02 output.list
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:02 runtime_log
[2025-10-12 23:02:30] -rw------- 1 boinc boinc    890880 Oct 12 23:02 result.tar.gz
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc      8782 Oct 12 23:02 runtime_log.err
[2025-10-12 23:02:30] -rw------- 1 boinc boinc       659 Oct 12 23:02 KhAMDmzB3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdeiNDmn2d6lm.diag
[2025-10-12 23:02:30] -rw-r--r-- 1 boinc boinc     10290 Oct 12 23:02 stderr.txt
[2025-10-12 23:02:30] HITS file was successfully produced:
[2025-10-12 23:02:30] -rw------- 1 boinc boinc 189324828 Oct 12 23:01 shared/HITS.pool.root.1
[2025-10-12 23:02:30]  *** Contents of shared directory: ***
[2025-10-12 23:02:30] total 403172
[2025-10-12 23:02:30] -rw-r--r-- 2 boinc boinc 222029285 Oct 12 21:53 ATLAS.root_0
[2025-10-12 23:02:30] -rw-r--r-- 2 boinc boinc    569676 Oct 12 21:53 input.tar.gz
[2025-10-12 23:02:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:53 start_atlas.sh
[2025-10-12 23:02:30] -rw------- 1 boinc boinc 189324828 Oct 12 23:01 HITS.pool.root.1
[2025-10-12 23:02:30] -rw------- 1 boinc boinc    890880 Oct 12 23:02 result.tar.gz
23:02:32 (3443380): run_atlas exited; CPU time 15505.795883
23:02:32 (3443380): called boinc_finish(0)

</stderr_txt>
]]>

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