Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:50:19 (17170): wrapper (7.7.26015): starting
05:50:19 (17170): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 05:50:19] Arguments: --nthreads 12
[2025-10-12 05:50:19] Threads: 12
[2025-10-12 05:50:19] Checking for CVMFS
[2025-10-12 05:50:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:50:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:50:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:50:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:50:19] 2.11.2.0 2998 222677 101308 151615 1 57 14909705 20275201 1 130560 1 108685346 99.984 13366509 12691 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:50:19] CVMFS is ok
[2025-10-12 05:50:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:50:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:50:19] Further information can be found at the LHC@home message board.
[2025-10-12 05:50:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:50:19] Checking for apptainer binary...
[2025-10-12 05:50:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:50:19] Running /usr/bin/apptainer --version
[2025-10-12 05:50:19] apptainer version 1.3.2-1.el7
[2025-10-12 05:50:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:50:21] c-205-25.aglt2.org
[2025-10-12 05:50:21] apptainer works
[2025-10-12 05:50:21] Set ATHENA_PROC_NUMBER=12
[2025-10-12 05:50:21] Set ATHENA_CORE_NUMBER=12
[2025-10-12 05:50:21] Starting ATLAS job with PandaID=6839316614
[2025-10-12 05:50:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:06:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:06:48]  scope=mc23_13p6TeV
[2025-10-12 07:06:48]  status=None
[2025-10-12 07:06:48]  status_code=0
[2025-10-12 07:06:48]  storage_token=
[2025-10-12 07:06:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839316614/log.46676269._069284.job.log.tgz.1
[2025-10-12 07:06:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/0d/log.46676269._069284.job.log.tgz.1
[2025-10-12 07:06:48]  workdir=None
[2025-10-12 07:06:48] ]
[2025-10-12 07:06:48] 2025-10-12 11:05:37,677 | INFO     | transferring file log.46676269._069284.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839316614/log.46676269._069284.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 07:06:48] 2025-10-12 11:05:37,677 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839316614/log.46676269._069284.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._069284.job
[2025-10-12 07:06:48] 2025-10-12 11:05:37,697 | INFO     | adding to output.list: log.46676269._069284.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/0d/log.46676269._069284.job.log.tg
[2025-10-12 07:06:48] 2025-10-12 11:05:37,697 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 07:06:48] 2025-10-12 11:05:37,697 | INFO     | summary of transferred files:
[2025-10-12 07:06:48] 2025-10-12 11:05:37,698 | INFO     |  -- lfn=log.46676269._069284.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 07:06:48] 2025-10-12 11:05:37,698 | INFO     | stage-out finished correctly
[2025-10-12 07:06:48] 2025-10-12 11:05:37,821 | INFO     | monitor loop #336: job 0:6839316614 is in state 'finished'
[2025-10-12 07:06:48] 2025-10-12 11:05:37,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:06:48] 2025-10-12 11:05:38,564 | INFO     | time since job start (4503s) is within the limit (172800.0s)
[2025-10-12 07:06:48] 2025-10-12 11:05:38,718 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 07:06:48] 2025-10-12 11:05:38,800 | INFO     | job 6839316614 has state=finished
[2025-10-12 07:06:48] 2025-10-12 11:05:38,800 | INFO     | preparing for final server update for job 6839316614 in state='finished'
[2025-10-12 07:06:48] 2025-10-12 11:05:38,800 | INFO     | this job has now completed (state=finished)
[2025-10-12 07:06:48] 2025-10-12 11:05:38,801 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 07:06:48] 2025-10-12 11:05:38,801 | INFO     | log transfer has been attempted: DONE
[2025-10-12 07:06:48] 2025-10-12 11:05:38,801 | INFO     | job 6839316614 has finished - writing final server update
[2025-10-12 07:06:48] 2025-10-12 11:05:38,801 | INFO     | total number of processed events: 400 (read)
[2025-10-12 07:06:48] 2025-10-12 11:05:38,802 | INFO     | executing command: lscpu
[2025-10-12 07:06:48] 2025-10-12 11:05:38,829 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 07:06:48] 2025-10-12 11:05:40,325 | INFO     | monitor loop #337: job 0:6839316614 is in state 'finished'
[2025-10-12 07:06:48] 2025-10-12 11:05:40,325 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:06:48] 2025-10-12 11:05:40,570 | INFO     | time since job start (4505s) is within the limit (172800.0s)
[2025-10-12 07:06:48] 2025-10-12 11:05:42,576 | INFO     | time since job start (4507s) is within the limit (172800.0s)
[2025-10-12 07:06:48] 2025-10-12 11:05:42,828 | INFO     | monitor loop #338: job 0:6839316614 is in state 'finished'
[2025-10-12 07:06:48] 2025-10-12 11:05:42,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,536 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 07:06:48] 2025-10-12 11:05:43,540 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 07:06:48] 2025-10-12 11:05:43,543 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839316614/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,544 | INFO     | extracted standard info from prmon json
[2025-10-12 07:06:48] 2025-10-12 11:05:43,544 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:06:48] 2025-10-12 11:05:43,544 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:06:48] 2025-10-12 11:05:43,545 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:06:48] 2025-10-12 11:05:43,545 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:06:48] 2025-10-12 11:05:43,546 | INFO     | fitting pss+swap vs Time
[2025-10-12 07:06:48] 2025-10-12 11:05:43,547 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,547 | INFO     | sum of deviations: -1777520479.9999998
[2025-10-12 07:06:48] 2025-10-12 11:05:43,547 | INFO     | mean x: 1760264982.0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,547 | INFO     | mean y: 2695722.0447761193
[2025-10-12 07:06:48] 2025-10-12 11:05:43,547 | INFO     | -- intersect: 33559963052.45184
[2025-10-12 07:06:48] 2025-10-12 11:05:43,547 | INFO     | intersect: 33559963052.45184
[2025-10-12 07:06:48] 2025-10-12 11:05:43,548 | INFO     | chi2: 0.054908912316513805
[2025-10-12 07:06:48] 2025-10-12 11:05:43,548 | INFO     | -- intersect: 33559963052.45184
[2025-10-12 07:06:48] 2025-10-12 11:05:43,548 | INFO     | current memory leak: -19.06 B/s (using 67 data points, chi2=0.05)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,548 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,548 | INFO     | ..............................
[2025-10-12 07:06:48] 2025-10-12 11:05:43,548 | INFO     | . Timing measurements:
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . get job = 0 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . initial setup = 2 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . payload setup = 6 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . stage-in = 0 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . payload execution = 4474 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . stage-out = 0 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | . log creation = 0 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,549 | INFO     | ..............................
[2025-10-12 07:06:48] 2025-10-12 11:05:43,632 | INFO     | 
[2025-10-12 07:06:48] 2025-10-12 11:05:43,632 | INFO     | job summary report
[2025-10-12 07:06:48] 2025-10-12 11:05:43,633 | INFO     | --------------------------------------------------
[2025-10-12 07:06:48] 2025-10-12 11:05:43,633 | INFO     | PanDA job id: 6839316614
[2025-10-12 07:06:48] 2025-10-12 11:05:43,633 | INFO     | task id: 46676269
[2025-10-12 07:06:48] 2025-10-12 11:05:43,633 | INFO     | errors: (none)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:06:48] 2025-10-12 11:05:43,634 | INFO     | pilot state: finished 
[2025-10-12 07:06:48] 2025-10-12 11:05:43,634 | INFO     | transexitcode: 0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,634 | INFO     | exeerrorcode: 0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,634 | INFO     | exeerrordiag: 
[2025-10-12 07:06:48] 2025-10-12 11:05:43,634 | INFO     | exitcode: 0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,634 | INFO     | exitmsg: OK
[2025-10-12 07:06:48] 2025-10-12 11:05:43,635 | INFO     | cpuconsumptiontime: 48093 s
[2025-10-12 07:06:48] 2025-10-12 11:05:43,635 | INFO     | nevents: 400
[2025-10-12 07:06:48] 2025-10-12 11:05:43,636 | INFO     | neventsw: 0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,636 | INFO     | pid: 27231
[2025-10-12 07:06:48] 2025-10-12 11:05:43,636 | INFO     | pgrp: 27231
[2025-10-12 07:06:48] 2025-10-12 11:05:43,637 | INFO     | corecount: 12
[2025-10-12 07:06:48] 2025-10-12 11:05:43,637 | INFO     | event service: False
[2025-10-12 07:06:48] 2025-10-12 11:05:43,637 | INFO     | sizes: {0: 2348683, 1: 2348882, 5: 2349144, 11: 2349200, 4485: 2375276, 4486: 2384274, 4487: 2384458, 4492: 2384652}
[2025-10-12 07:06:48] 2025-10-12 11:05:43,637 | INFO     | --------------------------------------------------
[2025-10-12 07:06:48] 2025-10-12 11:05:43,637 | INFO     | 
[2025-10-12 07:06:48] 2025-10-12 11:05:43,638 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 07:06:48] 2025-10-12 11:05:43,659 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,661 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,661 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,661 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,662 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,662 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,662 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,662 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,662 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,664 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,664 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:06:48] 2025-10-12 11:05:43,664 | INFO     | job 6839316614 has completed (purged errors)
[2025-10-12 07:06:48] 2025-10-12 11:05:43,664 | INFO     | overall cleanup function is called
[2025-10-12 07:06:48] 2025-10-12 11:05:43,763 | INFO     | PID=20860 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 07:06:48] 2025-10-12 11:05:44,673 | INFO     | --- collectZombieJob: --- 10, [27231]
[2025-10-12 07:06:48] 2025-10-12 11:05:44,673 | INFO     | zombie collector waiting for pid 27231
[2025-10-12 07:06:48] 2025-10-12 11:05:44,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:06:48] 2025-10-12 11:05:44,673 | INFO     | collected zombie processes
[2025-10-12 07:06:48] 2025-10-12 11:05:44,674 | INFO     | will attempt to kill all subprocesses of pid=27231
[2025-10-12 07:06:48] 2025-10-12 11:05:44,766 | INFO     | process IDs to be killed: [27231] (in reverse order)
[2025-10-12 07:06:48] 2025-10-12 11:05:44,816 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:06:48] 2025-10-12 11:05:44,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:06:48] 2025-10-12 11:05:44,820 | INFO     | did not find any defunct processes belonging to 27231
[2025-10-12 07:06:48] 2025-10-12 11:05:44,824 | INFO     | did not find any defunct processes belonging to 27231
[2025-10-12 07:06:48] 2025-10-12 11:05:44,824 | INFO     | ready for new job
[2025-10-12 07:06:48] 2025-10-12 11:05:44,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:06:48] 2025-10-12 11:05:44,825 | INFO     | ***************************************
[2025-10-12 07:06:48] 2025-10-12 11:05:44,826 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:06:48] 2025-10-12 11:05:44,826 | INFO     | ***************************************
[2025-10-12 07:06:48] 2025-10-12 11:05:44,826 | INFO     | 
[2025-10-12 07:06:48] 2025-10-12 11:05:44,826 | INFO     | architecture information:
[2025-10-12 07:06:48] 2025-10-12 11:05:44,827 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:06:48] 2025-10-12 11:05:44,840 | INFO     | cat /etc/os-release:
[2025-10-12 07:06:48] NAME="CentOS Linux"
[2025-10-12 07:06:48] VERSION="7 (Core)"
[2025-10-12 07:06:48] ID="centos"
[2025-10-12 07:06:48] ID_LIKE="rhel fedora"
[2025-10-12 07:06:48] VERSION_ID="7"
[2025-10-12 07:06:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:06:48] ANSI_COLOR="0;31"
[2025-10-12 07:06:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:06:48] HOME_URL="https://www.centos.org/"
[2025-10-12 07:06:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:06:48] 
[2025-10-12 07:06:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:06:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:06:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:06:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:06:48] 
[2025-10-12 07:06:48] 2025-10-12 11:05:44,840 | INFO     | ***************************************
[2025-10-12 07:06:48] 2025-10-12 11:05:45,343 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 07:06:48] 2025-10-12 11:05:45,360 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-10-12 07:06:48] 2025-10-12 11:05:45,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:06:48] 2025-10-12 11:05:45,361 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:06:48] 2025-10-12 11:05:45,361 | INFO     | update_server=False
[2025-10-12 07:06:48] 2025-10-12 11:05:45,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:06:48] 2025-10-12 11:05:45,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:06:48] 2025-10-12 11:05:45,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:06:48] 2025-10-12 11:05:45,792 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:06:48] 2025-10-12 11:05:46,071 | INFO     | all data control threads have been joined
[2025-10-12 07:06:48] 2025-10-12 11:05:46,275 | INFO     | all payload control threads have been joined
[2025-10-12 07:06:48] 2025-10-12 11:05:46,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:06:48] 2025-10-12 11:05:46,338 | INFO     | aborting loop
[2025-10-12 07:06:48] 2025-10-12 11:05:46,366 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:46,367 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:46,439 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:46,461 | INFO     | all job control threads have been joined
[2025-10-12 07:06:48] 2025-10-12 11:05:46,513 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:46,567 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:46,864 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,028 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,077 | INFO     | [data] control thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,279 | INFO     | [payload] control thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,343 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,466 | INFO     | [job] control thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,545 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,675 | INFO     | [job] validate thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:47,797 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:49,364 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:05:55,642 | INFO     | job.realtimelogging is not enabled
[2025-10-12 07:06:48] 2025-10-12 11:05:56,647 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:06:48] 2025-10-12 11:06:14,838 | INFO     | 4511s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 07:06:48] 2025-10-12 11:06:15,958 | INFO     | PID=20860 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 07:06:48] 2025-10-12 11:06:15,959 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:06:48] 2025-10-12 11:06:15,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:06:48] 2025-10-12 11:06:15,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:06:48] 2025-10-12 11:06:42,591 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:06:48] 2025-10-12 11:06:43,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140674690615104)>', '<ExcThread(monitor, started 140673659430656)>']
[2025-10-12 07:06:48] 2025-10-12 11:06:43,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:06:48] 2025-10-12 11:06:43,095 | INFO     | [monitor] control thread has ended
[2025-10-12 07:06:48] 2025-10-12 11:06:48,076 | INFO     | all workflow threads have been joined
[2025-10-12 07:06:48] 2025-10-12 11:06:48,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:06:48] 2025-10-12 11:06:48,076 | INFO     | traces error code: 0
[2025-10-12 07:06:48] 2025-10-12 11:06:48,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:06:48] 2025-10-12 11:06:48,169 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:06:48] 2025-10-12 11:06:48,173 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:06:48] 2025-10-12 11:06:48,177 [wrapper] pilotpid: 20860
[2025-10-12 07:06:48] 2025-10-12 11:06:48,180 [wrapper] Pilot exit status: 0
[2025-10-12 07:06:48] 2025-10-12 11:06:48,195 [wrapper] pandaids: 6839316614
[2025-10-12 07:06:48] 2025-10-12 11:06:48,240 [wrapper] cleanup supervisor_pilot 16464 20861
[2025-10-12 07:06:48] 2025-10-12 11:06:48,244 [wrapper] Test setup, not cleaning
[2025-10-12 07:06:48] 2025-10-12 11:06:48,248 [wrapper] apfmon messages muted
[2025-10-12 07:06:48] 2025-10-12 11:06:48,251 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:06:48] 2025-10-12 11:06:48,255 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:06:48]  *** Error codes and diagnostics ***
[2025-10-12 07:06:48]     "exeErrorCode": 0,
[2025-10-12 07:06:48]     "exeErrorDiag": "",
[2025-10-12 07:06:48]     "pilotErrorCode": 0,
[2025-10-12 07:06:48]     "pilotErrorDiag": "",
[2025-10-12 07:06:48]  *** Listing of results directory ***
[2025-10-12 07:06:48] total 415836
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 21:53 pilot3.tar.gz
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 22:22 queuedata.json
[2025-10-12 07:06:48] -rwx------ 1 boincer umatlas     36292 Oct 11 22:22 runpilot2-wrapper.sh
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas       100 Oct 12 05:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:06:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 05:50 run_atlas
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas       105 Oct 12 05:50 job.xml
[2025-10-12 07:06:48] -rw-r--r-- 2 boincer umatlas 222213548 Oct 12 05:50 EVNT.46676267._003180.pool.root.1
[2025-10-12 07:06:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 05:50 start_atlas.sh
[2025-10-12 07:06:48] drwxrwx--x 2 boincer umatlas      4096 Oct 12 05:50 shared
[2025-10-12 07:06:48] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 05:50 input.tar.gz
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas         0 Oct 12 05:50 boinc_lockfile
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas      2548 Oct 12 05:50 pandaJob.out
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas    975536 Oct 12 05:50 agis_schedconf.cvmfs.json
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas   1560580 Oct 12 05:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:06:48] drwx------ 5 boincer umatlas      4096 Oct 12 05:50 pilot3
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 07:04 init_data.xml
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas 197647949 Oct 12 07:05 HITS.46676269._069284.pool.root.1
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas       529 Oct 12 07:05 boinc_task_state.xml
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas      1052 Oct 12 07:05 memory_monitor_summary.json
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas        95 Oct 12 07:05 pilot_heartbeat.json
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas    374790 Oct 12 07:05 log.46676269._069284.job.log.tgz.1
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas      7850 Oct 12 07:05 heartbeat.json
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 07:06 boinc_mmap_file
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas        27 Oct 12 07:06 wrapper_checkpoint.txt
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas      4933 Oct 12 07:06 pilotlog.txt
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas    653645 Oct 12 07:06 log.46676269._069284.job.log.1
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas       357 Oct 12 07:06 output.list
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas       620 Oct 12 07:06 runtime_log
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas   1044480 Oct 12 07:06 result.tar.gz
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas       659 Oct 12 07:06 XEBMDm6t0R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyKiNDmXuJNOo.diag
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 07:06 runtime_log.err
[2025-10-12 07:06:48] -rw-r--r-- 1 boincer umatlas     22037 Oct 12 07:06 stderr.txt
[2025-10-12 07:06:48] HITS file was successfully produced:
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas 197647949 Oct 12 07:05 shared/HITS.pool.root.1
[2025-10-12 07:06:48]  *** Contents of shared directory: ***
[2025-10-12 07:06:48] total 411624
[2025-10-12 07:06:48] -rw-r--r-- 2 boincer umatlas 222213548 Oct 12 05:50 ATLAS.root_0
[2025-10-12 07:06:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 05:50 start_atlas.sh
[2025-10-12 07:06:48] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 05:50 input.tar.gz
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas 197647949 Oct 12 07:05 HITS.pool.root.1
[2025-10-12 07:06:48] -rw------- 1 boincer umatlas   1044480 Oct 12 07:06 result.tar.gz
07:06:49 (17170): run_atlas exited; CPU time 48061.112477
07:06:49 (17170): called boinc_finish(0)

</stderr_txt>
]]>

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