Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:02:23 (4023511): wrapper (7.7.26015): starting
02:02:23 (4023511): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 02:02:23] Arguments: --nthreads 3
[2025-10-13 02:02:23] Threads: 3
[2025-10-13 02:02:23] Checking for CVMFS
[2025-10-13 02:02:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:02:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:02:24] 2.9.2.0 2497006 5083 86332 151641 2 57 29107137 36864000 0 130560 0 4005403 99.991 174644 991 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 02:02:24] CVMFS is ok
[2025-10-13 02:02:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:02:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:02:24] Further information can be found at the LHC@home message board.
[2025-10-13 02:02:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:02:24] Checking for apptainer binary...
[2025-10-13 02:02:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:02:24] Running /usr/bin/apptainer --version
[2025-10-13 02:02:24] apptainer version 1.4.1-1.1
[2025-10-13 02:02:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:02:24] thA367
[2025-10-13 02:02:24] apptainer works
[2025-10-13 02:02:24] Set ATHENA_PROC_NUMBER=3
[2025-10-13 02:02:24] Set ATHENA_CORE_NUMBER=3
[2025-10-13 02:02:24] Starting ATLAS job with PandaID=6839162567
[2025-10-13 02:02:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:25:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:25:43]  mtime=0
[2025-10-13 03:25:43]  protocol_id=None
[2025-10-13 03:25:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 03:25:43]  replicas=None
[2025-10-13 03:25:43]  scope=mc23_13p6TeV
[2025-10-13 03:25:43]  status=None
[2025-10-13 03:25:43]  status_code=0
[2025-10-13 03:25:43]  storage_token=
[2025-10-13 03:25:43]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6839162567/log.46676269._066990.job.log.tgz.1
[2025-10-13 03:25:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/f2/log.46676269._066990.job.log.tgz.1
[2025-10-13 03:25:43]  workdir=None
[2025-10-13 03:25:43] ]
[2025-10-13 03:25:43] 2025-10-13 01:25:01,841 | INFO     | transferring file log.46676269._066990.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6839162567/log.46676269._066990.job.log.tgz.1 to /local/data/boinc/
[2025-10-13 03:25:43] 2025-10-13 01:25:01,841 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6839162567/log.46676269._066990.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0669
[2025-10-13 03:25:43] 2025-10-13 01:25:01,854 | INFO     | adding to output.list: log.46676269._066990.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/f2/log.46676269._066990.job.log.tg
[2025-10-13 03:25:43] 2025-10-13 01:25:01,854 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 03:25:43] 2025-10-13 01:25:01,854 | INFO     | summary of transferred files:
[2025-10-13 03:25:43] 2025-10-13 01:25:01,854 | INFO     |  -- lfn=log.46676269._066990.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 03:25:43] 2025-10-13 01:25:01,855 | INFO     | stage-out finished correctly
[2025-10-13 03:25:43] 2025-10-13 01:25:01,885 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 03:25:43] 2025-10-13 01:25:02,302 | INFO     | PID=4027226 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:25:43] 2025-10-13 01:25:02,894 | INFO     | job 6839162567 has state=finished
[2025-10-13 03:25:43] 2025-10-13 01:25:02,894 | INFO     | preparing for final server update for job 6839162567 in state='finished'
[2025-10-13 03:25:43] 2025-10-13 01:25:02,895 | INFO     | this job has now completed (state=finished)
[2025-10-13 03:25:43] 2025-10-13 01:25:02,895 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 03:25:43] 2025-10-13 01:25:02,895 | INFO     | log transfer has been attempted: DONE
[2025-10-13 03:25:43] 2025-10-13 01:25:02,895 | INFO     | job 6839162567 has finished - writing final server update
[2025-10-13 03:25:43] 2025-10-13 01:25:02,895 | INFO     | total number of processed events: 400 (read)
[2025-10-13 03:25:43] 2025-10-13 01:25:02,896 | INFO     | executing command: lscpu
[2025-10-13 03:25:43] 2025-10-13 01:25:02,913 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 03:25:43] 2025-10-13 01:25:03,303 | INFO     | time since job start (4953s) is within the limit (172800.0s)
[2025-10-13 03:25:43] 2025-10-13 01:25:03,572 | INFO     | monitor loop #383: job 0:6839162567 is in state 'finished'
[2025-10-13 03:25:43] 2025-10-13 01:25:03,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:25:43] 2025-10-13 01:25:05,307 | INFO     | time since job start (4955s) is within the limit (172800.0s)
[2025-10-13 03:25:43] 2025-10-13 01:25:06,075 | INFO     | monitor loop #384: job 0:6839162567 is in state 'finished'
[2025-10-13 03:25:43] 2025-10-13 01:25:06,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,313 | INFO     | time since job start (4957s) is within the limit (172800.0s)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,775 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 03:25:43] 2025-10-13 01:25:07,776 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3651.494916666666
[2025-10-13 03:25:43] 2025-10-13 01:25:07,777 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6839162567/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,777 | INFO     | extracted standard info from prmon json
[2025-10-13 03:25:43] 2025-10-13 01:25:07,777 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:25:43] 2025-10-13 01:25:07,777 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:25:43] 2025-10-13 01:25:07,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:25:43] 2025-10-13 01:25:07,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | sum of square deviations: 125630262.5
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | sum of deviations: -3814782009.999999
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | mean x: 1760316301.5
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | mean y: 2393013.7027027025
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | -- intersect: 53454664984.17586
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | intersect: 53454664984.17586
[2025-10-13 03:25:43] 2025-10-13 01:25:07,778 | INFO     | chi2: 0.07104777053682038
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | -- intersect: 53454664984.17586
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | current memory leak: -30.37 B/s (using 74 data points, chi2=0.07)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | could have reported an average CPU frequency of 3874 MHz (6 samples)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | ..............................
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . Timing measurements:
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . get job = 0 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . initial setup = 1 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . payload setup = 3 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . stage-in = 0 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . payload execution = 4930 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . stage-out = 0 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | . log creation = 0 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,779 | INFO     | ..............................
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | 
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | job summary report
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | --------------------------------------------------
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | PanDA job id: 6839162567
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | task id: 46676269
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | errors: (none)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | pilot state: finished 
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | transexitcode: 0
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | exeerrorcode: 0
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | exeerrordiag: 
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | exitcode: 0
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | exitmsg: OK
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | cpuconsumptiontime: 14195 s
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | nevents: 400
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | neventsw: 0
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | pid: 4033677
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | pgrp: 4033677
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | corecount: 3
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | event service: False
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | sizes: {0: 2348859, 3: 2349121, 11: 2349149, 4937: 2375531, 4938: 2384591, 4944: 2384729}
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | --------------------------------------------------
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | 
[2025-10-13 03:25:43] 2025-10-13 01:25:07,811 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | job 6839162567 has completed (purged errors)
[2025-10-13 03:25:43] 2025-10-13 01:25:07,825 | INFO     | overall cleanup function is called
[2025-10-13 03:25:43] 2025-10-13 01:25:08,831 | INFO     | --- collectZombieJob: --- 10, [4033677]
[2025-10-13 03:25:43] 2025-10-13 01:25:08,832 | INFO     | zombie collector waiting for pid 4033677
[2025-10-13 03:25:43] 2025-10-13 01:25:08,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:25:43] 2025-10-13 01:25:08,832 | INFO     | collected zombie processes
[2025-10-13 03:25:43] 2025-10-13 01:25:08,832 | INFO     | will attempt to kill all subprocesses of pid=4033677
[2025-10-13 03:25:43] 2025-10-13 01:25:08,875 | INFO     | process IDs to be killed: [4033677] (in reverse order)
[2025-10-13 03:25:43] 2025-10-13 01:25:08,900 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:25:43] 2025-10-13 01:25:08,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:25:43] 2025-10-13 01:25:08,902 | INFO     | did not find any defunct processes belonging to 4033677
[2025-10-13 03:25:43] 2025-10-13 01:25:08,903 | INFO     | did not find any defunct processes belonging to 4033677
[2025-10-13 03:25:43] 2025-10-13 01:25:08,903 | INFO     | ready for new job
[2025-10-13 03:25:43] 2025-10-13 01:25:08,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:25:43] 2025-10-13 01:25:08,904 | INFO     | ***************************************
[2025-10-13 03:25:43] 2025-10-13 01:25:08,904 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:25:43] 2025-10-13 01:25:08,904 | INFO     | ***************************************
[2025-10-13 03:25:43] 2025-10-13 01:25:08,904 | INFO     | 
[2025-10-13 03:25:43] 2025-10-13 01:25:08,904 | INFO     | architecture information:
[2025-10-13 03:25:43] 2025-10-13 01:25:08,904 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:25:43] 2025-10-13 01:25:08,913 | INFO     | cat /etc/os-release:
[2025-10-13 03:25:43] NAME="CentOS Linux"
[2025-10-13 03:25:43] VERSION="7 (Core)"
[2025-10-13 03:25:43] ID="centos"
[2025-10-13 03:25:43] ID_LIKE="rhel fedora"
[2025-10-13 03:25:43] VERSION_ID="7"
[2025-10-13 03:25:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:25:43] ANSI_COLOR="0;31"
[2025-10-13 03:25:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:25:43] HOME_URL="https://www.centos.org/"
[2025-10-13 03:25:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:25:43] 
[2025-10-13 03:25:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:25:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:25:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:25:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:25:43] 
[2025-10-13 03:25:43] 2025-10-13 01:25:08,914 | INFO     | ***************************************
[2025-10-13 03:25:43] 2025-10-13 01:25:09,417 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:25:43] 2025-10-13 01:25:09,430 | INFO     | sufficient remaining disk space (274602131456 B)
[2025-10-13 03:25:43] 2025-10-13 01:25:09,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:25:43] 2025-10-13 01:25:09,430 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:25:43] 2025-10-13 01:25:09,430 | INFO     | update_server=False
[2025-10-13 03:25:43] 2025-10-13 01:25:09,430 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:25:43] 2025-10-13 01:25:09,430 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:25:43] 2025-10-13 01:25:09,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:25:43] 2025-10-13 01:25:09,585 | INFO     | aborting loop
[2025-10-13 03:25:43] 2025-10-13 01:25:09,671 | INFO     | all payload control threads have been joined
[2025-10-13 03:25:43] 2025-10-13 01:25:09,772 | INFO     | all data control threads have been joined
[2025-10-13 03:25:43] 2025-10-13 01:25:09,881 | INFO     | all job control threads have been joined
[2025-10-13 03:25:43] 2025-10-13 01:25:09,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:25:43] 2025-10-13 01:25:10,436 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:10,436 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:10,590 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:10,677 | INFO     | [payload] control thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:10,773 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:10,778 | INFO     | [data] control thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:10,886 | INFO     | [job] control thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,165 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,174 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,308 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,401 | INFO     | [job] validate thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,490 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,523 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,600 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:11,902 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:12,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:25:43] 2025-10-13 01:25:16,430 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:25:43] 2025-10-13 01:25:36,133 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:25:43] 2025-10-13 01:25:38,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140193929992000)>', '<ExcThread(monitor, started 140193151571712)>']
[2025-10-13 03:25:43] 2025-10-13 01:25:40,447 | INFO     | PID=4027226 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:25:43] 2025-10-13 01:25:40,447 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:25:43] 2025-10-13 01:25:40,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:25:43] 2025-10-13 01:25:40,447 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:25:43] 2025-10-13 01:25:40,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:25:43] 2025-10-13 01:25:40,447 | INFO     | [monitor] control thread has ended
[2025-10-13 03:25:43] 2025-10-13 01:25:43,188 | INFO     | all workflow threads have been joined
[2025-10-13 03:25:43] 2025-10-13 01:25:43,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:25:43] 2025-10-13 01:25:43,189 | INFO     | traces error code: 0
[2025-10-13 03:25:43] 2025-10-13 01:25:43,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:25:43] 2025-10-13 01:25:43,239 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:25:43] 2025-10-13 01:25:43,242 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:25:43] 2025-10-13 01:25:43,244 [wrapper] pilotpid: 4027226
[2025-10-13 03:25:43] 2025-10-13 01:25:43,246 [wrapper] Pilot exit status: 0
[2025-10-13 03:25:43] 2025-10-13 01:25:43,254 [wrapper] pandaids: 6839162567
[2025-10-13 03:25:43] 2025-10-13 01:25:43,271 [wrapper] cleanup supervisor_pilot 4045533 4027227
[2025-10-13 03:25:43] 2025-10-13 01:25:43,274 [wrapper] Test setup, not cleaning
[2025-10-13 03:25:43] 2025-10-13 01:25:43,276 [wrapper] apfmon messages muted
[2025-10-13 03:25:43] 2025-10-13 01:25:43,279 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:25:43] 2025-10-13 01:25:43,281 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:25:43]  *** Error codes and diagnostics ***
[2025-10-13 03:25:43]     "exeErrorCode": 0,
[2025-10-13 03:25:43]     "exeErrorDiag": "",
[2025-10-13 03:25:43]     "pilotErrorCode": 0,
[2025-10-13 03:25:43]     "pilotErrorDiag": "",
[2025-10-13 03:25:43]  *** Listing of results directory ***
[2025-10-13 03:25:43] total 407076
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc    557409 Oct 12 01:21 pilot3.tar.gz
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc      5112 Oct 12 01:23 queuedata.json
[2025-10-13 03:25:43] -rwx------ 1 boinc boinc     36292 Oct 12 01:23 runpilot2-wrapper.sh
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:25:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:02 run_atlas
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:02 job.xml
[2025-10-13 03:25:43] -rw-r--r-- 2 boinc boinc 218127267 Oct 13 02:02 EVNT.46676267._002709.pool.root.1
[2025-10-13 03:25:43] -rw-r--r-- 2 boinc boinc    569678 Oct 13 02:02 input.tar.gz
[2025-10-13 03:25:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:02 start_atlas.sh
[2025-10-13 03:25:43] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:02 shared
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:02 boinc_setup_complete
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc      6447 Oct 13 02:02 init_data.xml
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:02 boinc_lockfile
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc      2549 Oct 13 02:02 pandaJob.out
[2025-10-13 03:25:43] -rw------- 1 boinc boinc    975603 Oct 13 02:02 agis_schedconf.cvmfs.json
[2025-10-13 03:25:43] -rw------- 1 boinc boinc   1560580 Oct 13 02:02 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:25:43] drwx------ 5 boinc boinc      4096 Oct 13 02:02 pilot3
[2025-10-13 03:25:43] -rw------- 1 boinc boinc 192843526 Oct 13 03:24 HITS.46676269._066990.pool.root.1
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:24 boinc_task_state.xml
[2025-10-13 03:25:43] -rw------- 1 boinc boinc        95 Oct 13 03:24 pilot_heartbeat.json
[2025-10-13 03:25:43] -rw------- 1 boinc boinc      1017 Oct 13 03:24 memory_monitor_summary.json
[2025-10-13 03:25:43] -rw------- 1 boinc boinc    258445 Oct 13 03:25 log.46676269._066990.job.log.tgz.1
[2025-10-13 03:25:43] -rw------- 1 boinc boinc      7746 Oct 13 03:25 heartbeat.json
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:25 boinc_mmap_file
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:25 wrapper_checkpoint.txt
[2025-10-13 03:25:43] -rw------- 1 boinc boinc      4752 Oct 13 03:25 pilotlog.txt
[2025-10-13 03:25:43] -rw------- 1 boinc boinc    728014 Oct 13 03:25 log.46676269._066990.job.log.1
[2025-10-13 03:25:43] -rw------- 1 boinc boinc       357 Oct 13 03:25 output.list
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:25 runtime_log
[2025-10-13 03:25:43] -rw------- 1 boinc boinc   1003520 Oct 13 03:25 result.tar.gz
[2025-10-13 03:25:43] -rw------- 1 boinc boinc       658 Oct 13 03:25 zlCMDmS7xR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJxhNDmsUJSom.diag
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc      8777 Oct 13 03:25 runtime_log.err
[2025-10-13 03:25:43] -rw-r--r-- 1 boinc boinc     21788 Oct 13 03:25 stderr.txt
[2025-10-13 03:25:43] HITS file was successfully produced:
[2025-10-13 03:25:43] -rw------- 1 boinc boinc 192843526 Oct 13 03:24 shared/HITS.pool.root.1
[2025-10-13 03:25:43]  *** Contents of shared directory: ***
[2025-10-13 03:25:43] total 402904
[2025-10-13 03:25:43] -rw-r--r-- 2 boinc boinc 218127267 Oct 13 02:02 ATLAS.root_0
[2025-10-13 03:25:43] -rw-r--r-- 2 boinc boinc    569678 Oct 13 02:02 input.tar.gz
[2025-10-13 03:25:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:02 start_atlas.sh
[2025-10-13 03:25:43] -rw------- 1 boinc boinc 192843526 Oct 13 03:24 HITS.pool.root.1
[2025-10-13 03:25:43] -rw------- 1 boinc boinc   1003520 Oct 13 03:25 result.tar.gz
03:25:44 (4023511): run_atlas exited; CPU time 14212.940864
03:25:44 (4023511): called boinc_finish(0)

</stderr_txt>
]]>

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