Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:38:59 (363080): wrapper (7.7.26015): starting
02:38:59 (363080): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 02:38:59] Arguments: --nthreads 12
[2025-10-12 02:38:59] Threads: 12
[2025-10-12 02:38:59] Checking for CVMFS
[2025-10-12 02:38:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:38:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:38:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:39:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:39:00] 2.11.5.0 2047 31327 217388 151615 0 331 43485814 45568000 15174 130560 0 316038786 99.858 128496632 28194 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 02:39:00] CVMFS is ok
[2025-10-12 02:39:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:39:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:39:00] Further information can be found at the LHC@home message board.
[2025-10-12 02:39:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:39:00] Checking for apptainer binary...
[2025-10-12 02:39:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:39:00] Running /usr/bin/apptainer --version
[2025-10-12 02:39:00] apptainer version 1.4.1-1.el9
[2025-10-12 02:39:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:39:00] wns0085.triumf.lcg
[2025-10-12 02:39:00] apptainer works
[2025-10-12 02:39:00] Set ATHENA_PROC_NUMBER=12
[2025-10-12 02:39:00] Set ATHENA_CORE_NUMBER=12
[2025-10-12 02:39:00] Starting ATLAS job with PandaID=6839658301
[2025-10-12 02:39:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 02:43:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | wrong length of table data, x=[1760262032.0], y=[1438.0] (must be same and length>=4)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | INFO     | could have reported an average CPU frequency of 2510 MHz (4 samples)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | ..............................
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . Timing measurements:
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . get job = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . initial setup = 3 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . payload setup = 14 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . stage-in = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . payload execution = 36 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . stage-out = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . log creation = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | ..............................
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839658301/pilotlog.txt
[2025-10-12 02:43:39] 2025-10-12 09:43:07,628 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 02:43:39] - Log from pilotlog.txt -
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839658301/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | INFO     | extracted standard info from prmon json
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | wrong length of table data, x=[1760262032.0], y=[1438.0] (must be same and length>=4)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | INFO     | could have reported an average CPU frequency of 2510 MHz (4 samples)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | ..............................
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . Timing measurements:
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . get job = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . initial setup = 3 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . payload setup = 14 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . stage-in = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . payload execution = 36 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . stage-out = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . log creation = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | ..............................
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839658301/pilotlog.txt
[2025-10-12 02:43:39] 2025-10-12 09:43:07,629 | WARNING  | 
[2025-10-12 02:43:39] [begin log extracts]
[2025-10-12 02:43:39] - Log from pilotlog.txt -
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839658301/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | INFO     | extracted standard info from prmon json
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:43:39] 2025-10-12 09:43:07,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | WARNING  | wrong length of table data, x=[1760262032.0], y=[1438.0] (must be same and length>=4)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,608 | INFO     | could have reported an average CPU frequency of 2510 MHz (4 samples)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | ..............................
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . Timing measurements:
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . get job = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . initial setup = 3 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . payload setup = 14 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . stage-in = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . payload execution = 36 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . stage-out = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | . log creation = 0 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | ..............................
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 02:43:39] 2025-10-12 09:43:07,609 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839658301/pilotlog.txt
[2025-10-12 02:43:39] [end log extracts]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,629 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,631 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 02:43:39] 2025-10-12 09:43:07,809 | INFO     | 
[2025-10-12 02:43:39] 2025-10-12 09:43:07,809 | INFO     | job summary report
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | --------------------------------------------------
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | PanDA job id: 6839658301
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | task id: 46676269
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 02:40:51,981 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | pilot state: failed 
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | transexitcode: 65
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | exeerrorcode: 65
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | exitcode: 65
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,810 | INFO     | cpuconsumptiontime: 18 s
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | nevents: 0
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | neventsw: 0
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | pid: 373850
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | pgrp: 373850
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | corecount: 12
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | event service: False
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | sizes: {0: 2348029, 1: 2348882, 12: 2348882, 16: 2349172, 23: 2349200, 54: 2372589, 56: 2376881, 57: 2376909, 183: 2377075}
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | --------------------------------------------------
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | 
[2025-10-12 02:43:39] 2025-10-12 09:43:07,812 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 02:43:39] 2025-10-12 09:43:07,850 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,850 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,854 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,854 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,854 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,854 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,854 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,854 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,856 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 02:43:39] 2025-10-12 09:43:07,857 | INFO     | job 6839658301 has completed (purged errors)
[2025-10-12 02:43:39] 2025-10-12 09:43:07,857 | INFO     | overall cleanup function is called
[2025-10-12 02:43:39] 2025-10-12 09:43:08,863 | INFO     | --- collectZombieJob: --- 10, [373850]
[2025-10-12 02:43:39] 2025-10-12 09:43:08,863 | INFO     | zombie collector waiting for pid 373850
[2025-10-12 02:43:39] 2025-10-12 09:43:08,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 02:43:39] 2025-10-12 09:43:08,864 | INFO     | collected zombie processes
[2025-10-12 02:43:39] 2025-10-12 09:43:08,864 | INFO     | will attempt to kill all subprocesses of pid=373850
[2025-10-12 02:43:39] 2025-10-12 09:43:09,129 | INFO     | process IDs to be killed: [373850] (in reverse order)
[2025-10-12 02:43:39] 2025-10-12 09:43:09,219 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 02:43:39] 2025-10-12 09:43:09,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 02:43:39] 2025-10-12 09:43:09,248 | INFO     | did not find any defunct processes belonging to 373850
[2025-10-12 02:43:39] 2025-10-12 09:43:09,259 | INFO     | did not find any defunct processes belonging to 373850
[2025-10-12 02:43:39] 2025-10-12 09:43:09,259 | INFO     | ready for new job
[2025-10-12 02:43:39] 2025-10-12 09:43:09,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 02:43:39] 2025-10-12 09:43:09,262 | INFO     | ***************************************
[2025-10-12 02:43:39] 2025-10-12 09:43:09,262 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 02:43:39] 2025-10-12 09:43:09,262 | INFO     | ***************************************
[2025-10-12 02:43:39] 2025-10-12 09:43:09,262 | INFO     | 
[2025-10-12 02:43:39] 2025-10-12 09:43:09,264 | INFO     | architecture information:
[2025-10-12 02:43:39] 2025-10-12 09:43:09,267 | INFO     | executing command: cat /etc/os-release
[2025-10-12 02:43:39] 2025-10-12 09:43:09,299 | INFO     | cat /etc/os-release:
[2025-10-12 02:43:39] NAME="CentOS Linux"
[2025-10-12 02:43:39] VERSION="7 (Core)"
[2025-10-12 02:43:39] ID="centos"
[2025-10-12 02:43:39] ID_LIKE="rhel fedora"
[2025-10-12 02:43:39] VERSION_ID="7"
[2025-10-12 02:43:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 02:43:39] ANSI_COLOR="0;31"
[2025-10-12 02:43:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 02:43:39] HOME_URL="https://www.centos.org/"
[2025-10-12 02:43:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 02:43:39] 
[2025-10-12 02:43:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 02:43:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 02:43:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 02:43:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 02:43:39] 
[2025-10-12 02:43:39] 2025-10-12 09:43:09,299 | INFO     | ***************************************
[2025-10-12 02:43:39] 2025-10-12 09:43:09,804 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 02:43:39] 2025-10-12 09:43:09,829 | INFO     | sufficient remaining disk space (1912138104832 B)
[2025-10-12 02:43:39] 2025-10-12 09:43:09,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 02:43:39] 2025-10-12 09:43:09,830 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 02:43:39] 2025-10-12 09:43:09,830 | INFO     | update_server=False
[2025-10-12 02:43:39] 2025-10-12 09:43:09,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 02:43:39] 2025-10-12 09:43:09,830 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:43:39] 2025-10-12 09:43:09,831 | INFO     | aborting loop
[2025-10-12 02:43:39] 2025-10-12 09:43:09,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 02:43:39] 2025-10-12 09:43:09,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 02:43:39] 2025-10-12 09:43:09,860 | INFO     | all payload control threads have been joined
[2025-10-12 02:43:39] 2025-10-12 09:43:09,865 | INFO     | all job control threads have been joined
[2025-10-12 02:43:39] 2025-10-12 09:43:10,825 | INFO     | all data control threads have been joined
[2025-10-12 02:43:39] 2025-10-12 09:43:10,836 | INFO     | [job] job monitor thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:10,837 | INFO     | [job] retrieve thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:10,865 | INFO     | [payload] control thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:10,874 | INFO     | [job] control thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,008 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,264 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,525 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,559 | INFO     | [payload] validate_post thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,832 | INFO     | [data] control thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,846 | INFO     | [data] copytool_out thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,877 | INFO     | [job] validate thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:11,993 | INFO     | [data] copytool_in thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:12,120 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:12,158 | INFO     | [payload] failed_post thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:12,724 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:43:39] 2025-10-12 09:43:13,730 | INFO     | [job] queue monitor thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:13,840 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 02:43:39] 2025-10-12 09:43:29,212 | INFO     | [monitor] cgroup control has ended
[2025-10-12 02:43:39] 2025-10-12 09:43:29,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472024864576)>', '<ExcThread(monitor, started 140471636571904)>']
[2025-10-12 02:43:39] 2025-10-12 09:43:34,934 | INFO     | all workflow threads have been joined
[2025-10-12 02:43:39] 2025-10-12 09:43:34,935 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 02:43:39] 2025-10-12 09:43:34,936 | INFO     | traces error code: 0
[2025-10-12 02:43:39] 2025-10-12 09:43:34,936 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 02:43:39] 2025-10-12 09:43:39,437 | INFO     | PID=366853 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 02:43:39] 2025-10-12 09:43:39,438 | INFO     | .. there are 28 such processes running
[2025-10-12 02:43:39] 2025-10-12 09:43:39,439 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 02:43:39] 2025-10-12 09:43:39,439 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 02:43:39] 2025-10-12 09:43:39,439 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 02:43:39] 2025-10-12 09:43:39,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 02:43:39] 2025-10-12 09:43:39,439 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 02:43:39] 2025-10-12 09:43:39,439 | INFO     | [monitor] control thread has ended
[2025-10-12 02:43:39] 2025-10-12 09:43:39,565 [wrapper] ==== pilot stdout END ====
[2025-10-12 02:43:39] 2025-10-12 09:43:39,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 02:43:39] 2025-10-12 09:43:39,600 [wrapper] pilotpid: 366853
[2025-10-12 02:43:39] 2025-10-12 09:43:39,609 [wrapper] Pilot exit status: 0
[2025-10-12 02:43:39] 2025-10-12 09:43:39,638 [wrapper] pandaids: 6839658301
[2025-10-12 02:43:39] 2025-10-12 09:43:39,736 [wrapper] cleanup supervisor_pilot  366859 366854
[2025-10-12 02:43:39] 2025-10-12 09:43:39,744 [wrapper] Test setup, not cleaning
[2025-10-12 02:43:39] 2025-10-12 09:43:39,750 [wrapper] apfmon messages muted
[2025-10-12 02:43:39] 2025-10-12 09:43:39,752 [wrapper] ==== wrapper stdout END ====
[2025-10-12 02:43:39] 2025-10-12 09:43:39,754 [wrapper] ==== wrapper stderr END ====
[2025-10-12 02:43:39]  *** Error codes and diagnostics ***
[2025-10-12 02:43:39]     "exeErrorCode": 65,
[2025-10-12 02:43:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 02:43:39]     "pilotErrorCode": 1305,
[2025-10-12 02:43:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 02:43:39]  *** Listing of results directory ***
[2025-10-12 02:43:39] total 219204
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc    557409 Oct 11 23:54 pilot3.tar.gz
[2025-10-12 02:43:39] -rwx------. 1 boinc boinc     36292 Oct 12 00:17 runpilot2-wrapper.sh
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc      5112 Oct 12 00:17 queuedata.json
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc       100 Oct 12 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 02:43:39] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 02:38 run_atlas
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc       105 Oct 12 02:38 job.xml
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc      6594 Oct 12 02:38 init_data.xml
[2025-10-12 02:43:39] -rw-r--r--. 2 boinc boinc 220343904 Oct 12 02:38 EVNT.46676267._003497.pool.root.1
[2025-10-12 02:43:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 02:38 start_atlas.sh
[2025-10-12 02:43:39] drwxrwx--x. 2 boinc boinc      4096 Oct 12 02:38 shared
[2025-10-12 02:43:39] -rw-r--r--. 2 boinc boinc    569677 Oct 12 02:38 input.tar.gz
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc         0 Oct 12 02:38 boinc_lockfile
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc      2550 Oct 12 02:39 pandaJob.out
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc    975536 Oct 12 02:39 agis_schedconf.cvmfs.json
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc   1560580 Oct 12 02:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 02:43:39] drwx------. 5 boinc boinc      4096 Oct 12 02:39 pilot3
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc       524 Oct 12 02:40 boinc_task_state.xml
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc       964 Oct 12 02:40 memory_monitor_summary.json
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc     21799 Oct 12 02:41 log.46676269._073458.job.log.tgz.1
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc      8414 Oct 12 02:43 heartbeat.json
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc        22 Oct 12 02:43 wrapper_checkpoint.txt
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc      8192 Oct 12 02:43 boinc_mmap_file
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc       892 Oct 12 02:43 pilotlog.txt
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc        95 Oct 12 02:43 pilot_heartbeat.json
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc     89331 Oct 12 02:43 log.46676269._073458.job.log.1
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc       188 Oct 12 02:43 output.list
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc       620 Oct 12 02:43 runtime_log
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc    133120 Oct 12 02:43 result.tar.gz
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc      8528 Oct 12 02:43 runtime_log.err
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc       644 Oct 12 02:43 GdXNDmmV5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2QTMDmvWn9im.diag
[2025-10-12 02:43:39] -rw-r--r--. 1 boinc boinc     21784 Oct 12 02:43 stderr.txt
[2025-10-12 02:43:39] No HITS result produced
[2025-10-12 02:43:39]  *** Contents of shared directory: ***
[2025-10-12 02:43:39] total 215888
[2025-10-12 02:43:39] -rw-r--r--. 2 boinc boinc 220343904 Oct 12 02:38 ATLAS.root_0
[2025-10-12 02:43:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 02:38 start_atlas.sh
[2025-10-12 02:43:39] -rw-r--r--. 2 boinc boinc    569677 Oct 12 02:38 input.tar.gz
[2025-10-12 02:43:39] -rw-------. 1 boinc boinc    133120 Oct 12 02:43 result.tar.gz
02:43:41 (363080): run_atlas exited; CPU time 25.313322
02:43:41 (363080): called boinc_finish(0)

</stderr_txt>
]]>

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