Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:33:38 (158725): wrapper (7.7.26015): starting
02:33:38 (158725): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 02:33:38] Arguments: --nthreads 8
[2025-10-12 02:33:38] Threads: 8
[2025-10-12 02:33:38] Checking for CVMFS
[2025-10-12 02:33:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 02:33:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 02:33:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 02:33:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 02:33:39] 2.11.3.0 4007 31317 208788 151615 2 14 31933750 45568001 15018 130560 0 174206899 99.849 76207500 25962 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 02:33:39] CVMFS is ok
[2025-10-12 02:33:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 02:33:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 02:33:39] Further information can be found at the LHC@home message board.
[2025-10-12 02:33:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 02:33:39] Checking for apptainer binary...
[2025-10-12 02:33:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 02:33:39] Running /usr/bin/apptainer --version
[2025-10-12 02:33:39] apptainer version 1.4.1-1.el9
[2025-10-12 02:33:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 02:33:40] wns0017.triumf.lcg
[2025-10-12 02:33:40] apptainer works
[2025-10-12 02:33:40] Set ATHENA_PROC_NUMBER=8
[2025-10-12 02:33:40] Set ATHENA_CORE_NUMBER=8
[2025-10-12 02:33:40] Starting ATLAS job with PandaID=6839658275
[2025-10-12 02:33:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 02:41:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 02:41:44] 2025-10-12 09:40:38,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:41:44] 2025-10-12 09:40:38,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | WARNING  | wrong length of table data, x=[1760261786.0, 1760261847.0], y=[2601.0, 481924.0] (must be same and length>=4)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | ..............................
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . Timing measurements:
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . get job = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . initial setup = 7 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . payload setup = 33 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . stage-in = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . payload execution = 125 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . stage-out = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . log creation = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | ..............................
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839658275/pilotlog.txt
[2025-10-12 02:41:44] 2025-10-12 09:40:38,686 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 02:41:44] - Log from pilotlog.txt -
[2025-10-12 02:41:44] 2025-10-12 09:40:38,560 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839658275/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,561 | INFO     | extracted standard info from prmon json
[2025-10-12 02:41:44] 2025-10-12 09:40:38,561 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:41:44] 2025-10-12 09:40:38,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:41:44] 2025-10-12 09:40:38,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:41:44] 2025-10-12 09:40:38,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | WARNING  | wrong length of table data, x=[1760261786.0, 1760261847.0], y=[2601.0, 481924.0] (must be same and length>=4)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | ..............................
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . Timing measurements:
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . get job = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . initial setup = 7 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . payload setup = 33 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . stage-in = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . payload execution = 125 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . stage-out = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . log creation = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | ..............................
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839658275/pilotlog.txt
[2025-10-12 02:41:44] 2025-10-12 09:40:38,687 | WARNING  | 
[2025-10-12 02:41:44] [begin log extracts]
[2025-10-12 02:41:44] - Log from pilotlog.txt -
[2025-10-12 02:41:44] 2025-10-12 09:40:38,560 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839658275/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,561 | INFO     | extracted standard info from prmon json
[2025-10-12 02:41:44] 2025-10-12 09:40:38,561 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:41:44] 2025-10-12 09:40:38,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:41:44] 2025-10-12 09:40:38,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:41:44] 2025-10-12 09:40:38,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | WARNING  | wrong length of table data, x=[1760261786.0, 1760261847.0], y=[2601.0, 481924.0] (must be same and length>=4)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | ..............................
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . Timing measurements:
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . get job = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,563 | INFO     | . initial setup = 7 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . payload setup = 33 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . stage-in = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . payload execution = 125 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . stage-out = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | . log creation = 0 s
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | ..............................
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 02:41:44] 2025-10-12 09:40:38,564 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839658275/pilotlog.txt
[2025-10-12 02:41:44] [end log extracts]
[2025-10-12 02:41:44] 2025-10-12 09:40:38,687 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 02:41:44] 2025-10-12 09:40:38,688 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 02:41:44] 2025-10-12 09:40:38,872 | INFO     | time since job start (362s) is within the limit (172800.0s)
[2025-10-12 02:41:44] 2025-10-12 09:40:39,369 | INFO     | 
[2025-10-12 02:41:44] 2025-10-12 09:40:39,378 | INFO     | job summary report
[2025-10-12 02:41:44] 2025-10-12 09:40:39,378 | INFO     | --------------------------------------------------
[2025-10-12 02:41:44] 2025-10-12 09:40:39,378 | INFO     | PanDA job id: 6839658275
[2025-10-12 02:41:44] 2025-10-12 09:40:39,378 | INFO     | task id: 46676269
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 02:37:56,100 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | pilot state: failed 
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | transexitcode: 65
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | exeerrorcode: 65
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | exitcode: 65
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 02:41:44] 2025-10-12 09:40:39,379 | INFO     | cpuconsumptiontime: 21 s
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | nevents: 0
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | neventsw: 0
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | pid: 169272
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | pgrp: 169272
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | corecount: 8
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | event service: False
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | sizes: {0: 2348029, 1: 2348711, 2: 2348910, 12: 2348910, 23: 2348938, 25: 2349228, 34: 2349384, 163: 2376873, 167: 2376873, 311: 2377067}
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | --------------------------------------------------
[2025-10-12 02:41:44] 2025-10-12 09:40:39,386 | INFO     | 
[2025-10-12 02:41:44] 2025-10-12 09:40:39,387 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 02:41:44] 2025-10-12 09:40:39,545 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,546 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,564 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | job 6839658275 has completed (purged errors)
[2025-10-12 02:41:44] 2025-10-12 09:40:39,565 | INFO     | overall cleanup function is called
[2025-10-12 02:41:44] 2025-10-12 09:40:40,580 | INFO     | --- collectZombieJob: --- 10, [169272]
[2025-10-12 02:41:44] 2025-10-12 09:40:40,580 | INFO     | zombie collector waiting for pid 169272
[2025-10-12 02:41:44] 2025-10-12 09:40:40,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 02:41:44] 2025-10-12 09:40:40,580 | INFO     | collected zombie processes
[2025-10-12 02:41:44] 2025-10-12 09:40:40,581 | INFO     | will attempt to kill all subprocesses of pid=169272
[2025-10-12 02:41:44] 2025-10-12 09:40:40,918 | INFO     | process IDs to be killed: [169272] (in reverse order)
[2025-10-12 02:41:44] 2025-10-12 09:40:41,425 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 02:41:44] 2025-10-12 09:40:41,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 02:41:44] 2025-10-12 09:40:41,449 | INFO     | did not find any defunct processes belonging to 169272
[2025-10-12 02:41:44] 2025-10-12 09:40:41,479 | INFO     | did not find any defunct processes belonging to 169272
[2025-10-12 02:41:44] 2025-10-12 09:40:41,480 | INFO     | ready for new job
[2025-10-12 02:41:44] 2025-10-12 09:40:41,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 02:41:44] 2025-10-12 09:40:41,491 | INFO     | ***************************************
[2025-10-12 02:41:44] 2025-10-12 09:40:41,491 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 02:41:44] 2025-10-12 09:40:41,491 | INFO     | ***************************************
[2025-10-12 02:41:44] 2025-10-12 09:40:41,492 | INFO     | 
[2025-10-12 02:41:44] 2025-10-12 09:40:41,493 | INFO     | architecture information:
[2025-10-12 02:41:44] 2025-10-12 09:40:41,516 | INFO     | executing command: cat /etc/os-release
[2025-10-12 02:41:44] 2025-10-12 09:40:41,584 | INFO     | cat /etc/os-release:
[2025-10-12 02:41:44] NAME="CentOS Linux"
[2025-10-12 02:41:44] VERSION="7 (Core)"
[2025-10-12 02:41:44] ID="centos"
[2025-10-12 02:41:44] ID_LIKE="rhel fedora"
[2025-10-12 02:41:44] VERSION_ID="7"
[2025-10-12 02:41:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 02:41:44] ANSI_COLOR="0;31"
[2025-10-12 02:41:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 02:41:44] HOME_URL="https://www.centos.org/"
[2025-10-12 02:41:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 02:41:44] 
[2025-10-12 02:41:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 02:41:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 02:41:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 02:41:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 02:41:44] 
[2025-10-12 02:41:44] 2025-10-12 09:40:41,585 | INFO     | ***************************************
[2025-10-12 02:41:44] 2025-10-12 09:40:42,088 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 02:41:44] 2025-10-12 09:40:42,214 | INFO     | sufficient remaining disk space (1238475210752 B)
[2025-10-12 02:41:44] 2025-10-12 09:40:42,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 02:41:44] 2025-10-12 09:40:42,215 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 02:41:44] 2025-10-12 09:40:42,215 | INFO     | update_server=False
[2025-10-12 02:41:44] 2025-10-12 09:40:42,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 02:41:44] 2025-10-12 09:40:42,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:41:44] 2025-10-12 09:40:42,406 | INFO     | aborting loop
[2025-10-12 02:41:44] 2025-10-12 09:40:42,589 | INFO     | all job control threads have been joined
[2025-10-12 02:41:44] 2025-10-12 09:40:42,640 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 02:41:44] 2025-10-12 09:40:42,862 | INFO     | all data control threads have been joined
[2025-10-12 02:41:44] 2025-10-12 09:40:43,221 | INFO     | [job] retrieve thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,276 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,412 | INFO     | [job] job monitor thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,462 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,595 | INFO     | [job] control thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,710 | INFO     | [data] copytool_in thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,724 | INFO     | all payload control threads have been joined
[2025-10-12 02:41:44] 2025-10-12 09:40:43,869 | INFO     | [data] control thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:43,965 | INFO     | [payload] validate_post thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:44,067 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:44,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:41:44] 2025-10-12 09:40:44,521 | INFO     | [job] validate thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:44,647 | INFO     | [data] copytool_out thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:44,731 | INFO     | [payload] control thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:44,755 | INFO     | [payload] failed_post thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:45,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 02:41:44] 2025-10-12 09:40:45,391 | INFO     | [job] queue monitor thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:40:49,238 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 02:41:44] 2025-10-12 09:41:12,328 | INFO     | PID=162488 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 02:41:44] 2025-10-12 09:41:12,328 | INFO     | .. there are 26 such processes running
[2025-10-12 02:41:44] 2025-10-12 09:41:12,328 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 02:41:44] 2025-10-12 09:41:12,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 02:41:44] 2025-10-12 09:41:12,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 02:41:44] 2025-10-12 09:41:35,738 | INFO     | [monitor] cgroup control has ended
[2025-10-12 02:41:44] 2025-10-12 09:41:37,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066159277888)>', '<ExcThread(monitor, started 140065770555136)>']
[2025-10-12 02:41:44] 2025-10-12 09:41:37,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 02:41:44] 2025-10-12 09:41:37,555 | INFO     | [monitor] control thread has ended
[2025-10-12 02:41:44] 2025-10-12 09:41:42,053 | INFO     | all workflow threads have been joined
[2025-10-12 02:41:44] 2025-10-12 09:41:42,053 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 02:41:44] 2025-10-12 09:41:42,053 | INFO     | traces error code: 0
[2025-10-12 02:41:44] 2025-10-12 09:41:42,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 02:41:44] 2025-10-12 09:41:43,211 [wrapper] ==== pilot stdout END ====
[2025-10-12 02:41:44] 2025-10-12 09:41:43,249 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 02:41:44] 2025-10-12 09:41:43,274 [wrapper] pilotpid: 162488
[2025-10-12 02:41:44] 2025-10-12 09:41:43,315 [wrapper] Pilot exit status: 0
[2025-10-12 02:41:44] 2025-10-12 09:41:43,429 [wrapper] pandaids: 6839658275
[2025-10-12 02:41:44] 2025-10-12 09:41:43,771 [wrapper] cleanup supervisor_pilot  162494 162489
[2025-10-12 02:41:44] 2025-10-12 09:41:43,809 [wrapper] Test setup, not cleaning
[2025-10-12 02:41:44] 2025-10-12 09:41:43,824 [wrapper] apfmon messages muted
[2025-10-12 02:41:44] 2025-10-12 09:41:43,839 [wrapper] ==== wrapper stdout END ====
[2025-10-12 02:41:44] 2025-10-12 09:41:43,851 [wrapper] ==== wrapper stderr END ====
[2025-10-12 02:41:44]  *** Error codes and diagnostics ***
[2025-10-12 02:41:44]     "exeErrorCode": 65,
[2025-10-12 02:41:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 02:41:44]     "pilotErrorCode": 1305,
[2025-10-12 02:41:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 02:41:44]  *** Listing of results directory ***
[2025-10-12 02:41:44] total 221416
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc    557409 Oct 11 23:54 pilot3.tar.gz
[2025-10-12 02:41:44] -rwx------. 1 boinc boinc     36292 Oct 12 00:17 runpilot2-wrapper.sh
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc      5112 Oct 12 00:17 queuedata.json
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc       100 Oct 12 02:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 02:41:44] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 02:33 run_atlas
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc       105 Oct 12 02:33 job.xml
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc      6444 Oct 12 02:33 init_data.xml
[2025-10-12 02:41:44] -rw-r--r--. 2 boinc boinc 222575902 Oct 12 02:33 EVNT.46676267._003496.pool.root.1
[2025-10-12 02:41:44] -rw-r--r--. 2 boinc boinc    569682 Oct 12 02:33 input.tar.gz
[2025-10-12 02:41:44] -rw-r--r--. 2 boinc boinc     15120 Oct 12 02:33 start_atlas.sh
[2025-10-12 02:41:44] drwxrwx--x. 2 boinc boinc      4096 Oct 12 02:33 shared
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc         0 Oct 12 02:33 boinc_lockfile
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc      2550 Oct 12 02:33 pandaJob.out
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc    975536 Oct 12 02:34 agis_schedconf.cvmfs.json
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc   1560580 Oct 12 02:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 02:41:44] drwx------. 5 boinc boinc      4096 Oct 12 02:34 pilot3
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc       524 Oct 12 02:37 boinc_task_state.xml
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc       983 Oct 12 02:38 memory_monitor_summary.json
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc     23268 Oct 12 02:38 log.46676269._073432.job.log.tgz.1
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc        95 Oct 12 02:40 pilot_heartbeat.json
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc      8389 Oct 12 02:40 heartbeat.json
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc      4822 Oct 12 02:41 pilotlog.txt
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc      8192 Oct 12 02:41 boinc_mmap_file
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc        23 Oct 12 02:41 wrapper_checkpoint.txt
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc    104528 Oct 12 02:41 log.46676269._073432.job.log.1
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc       188 Oct 12 02:41 output.list
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc       620 Oct 12 02:41 runtime_log
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc    143360 Oct 12 02:41 result.tar.gz
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc      8526 Oct 12 02:41 runtime_log.err
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc       647 Oct 12 02:41 1I5MDmmV5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmiQTMDmagOP0m.diag
[2025-10-12 02:41:44] -rw-r--r--. 1 boinc boinc     21892 Oct 12 02:41 stderr.txt
[2025-10-12 02:41:44] No HITS result produced
[2025-10-12 02:41:44]  *** Contents of shared directory: ***
[2025-10-12 02:41:44] total 218080
[2025-10-12 02:41:44] -rw-r--r--. 2 boinc boinc 222575902 Oct 12 02:33 ATLAS.root_0
[2025-10-12 02:41:44] -rw-r--r--. 2 boinc boinc    569682 Oct 12 02:33 input.tar.gz
[2025-10-12 02:41:44] -rw-r--r--. 2 boinc boinc     15120 Oct 12 02:33 start_atlas.sh
[2025-10-12 02:41:44] -rw-------. 1 boinc boinc    143360 Oct 12 02:41 result.tar.gz
02:41:46 (158725): run_atlas exited; CPU time 34.468154
02:41:46 (158725): called boinc_finish(0)

</stderr_txt>
]]>

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