Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 11:38:36 (12820): vboxwrapper version 26210
2025-10-12 11:38:36 (12820): BOINC client version: 8.2.4
2025-10-12 11:38:37 (12820): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-12 11:38:37 (12820): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 11:38:37 (12820): Create VM. (boinc_89a57ae92544e173, slot#1)
2025-10-12 11:38:38 (12820): Setting Memory Size for VM. (4400MB)
2025-10-12 11:38:38 (12820): Setting CPU Count for VM. (4)
2025-10-12 11:38:38 (12820): Setting Chipset Options for VM.
2025-10-12 11:38:39 (12820): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 11:38:39 (12820): Setting Boot Options for VM.
2025-10-12 11:38:39 (12820): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 11:38:40 (12820): Enabling VM Network Access.
2025-10-12 11:38:40 (12820): Disabling USB Support for VM.
2025-10-12 11:38:40 (12820): Disabling COM Port Support for VM.
2025-10-12 11:38:41 (12820): Disabling LPT Port Support for VM.
2025-10-12 11:38:41 (12820): Disabling Audio Support for VM.
2025-10-12 11:38:41 (12820): Disabling Clipboard Support for VM.
2025-10-12 11:38:41 (12820): Disabling Drag and Drop Support for VM.
2025-10-12 11:38:42 (12820): Adding storage controller(s) to VM.
2025-10-12 11:38:42 (12820): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 11:38:42 (12820): Adding VirtualBox Guest Additions to VM.
2025-10-12 11:38:43 (12820): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 11:38:43 (12820): forwarding host port 51418 to guest port 80
2025-10-12 11:38:43 (12820): Enabling remote desktop for VM.
2025-10-12 11:38:43 (12820): Required extension pack not installed, remote desktop not enabled.
2025-10-12 11:38:43 (12820): Enabling shared directory for VM.
2025-10-12 11:38:44 (12820): Starting VM using VBoxManage interface. (boinc_89a57ae92544e173, slot#1)
2025-10-12 11:38:49 (12820): Successfully started VM. (PID = '15008')
2025-10-12 11:38:49 (12820): Reporting VM Process ID to BOINC.
2025-10-12 11:38:49 (12820): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-12 11:38:49 (12820): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 11:38:49 (12820): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 11:38:49 (12820): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 11:38:49 (12820): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 11:38:49 (12820): Detected: Web Application Enabled (http://localhost:51418)
2025-10-12 11:38:49 (12820): Preference change detected
2025-10-12 11:38:49 (12820): Setting CPU throttle for VM. (50%)
2025-10-12 11:38:49 (12820): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 11:38:51 (12820): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 11:38:51 (12820): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 11:38:54 (12820): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 11:38:54 (12820): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 11:38:54 (12820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 11:39:00 (12820): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 11:39:00 (12820): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 11:39:06 (12820): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000075 main     Log opened 2025-10-12T11:39:04.067440000Z
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000141 main     OS Product: Linux
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000157 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000169 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000181 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000182 main     Process ID: 1322
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.000182 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 11:39:06 (12820): Guest Log: 00:00:00.001273 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 11:39:06 (12820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 11:39:06 (12820): Guest Log: [INFO] Mounting shared directory
2025-10-12 11:39:06 (12820): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 11:39:09 (12820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 11:39:09 (12820): Guest Log: [INFO] Detected branch: prod
2025-10-12 11:39:09 (12820): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 11:39:09 (12820): Guest Log: Copying input files
2025-10-12 11:39:10 (12820): Guest Log: Copied input files into RunAtlas.
2025-10-12 11:39:10 (12820): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 11:39:10 (12820): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 11:39:10 (12820): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 11:39:10 (12820): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 11:39:16 (12820): Guest Log: 00:00:10.011482 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 280 447 000ns (GuestNow=1 760 261 955 790 136 000 ns GuestLast=1 760 269 144 070 583 000 ns fSetTimeLastLoop=true )
2025-10-12 11:39:18 (12820): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 11:39:19 (12820): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 11:39:19 (12820): Guest Log: 2.6.3.0 1594 0 30144 151615 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 11:39:19 (12820): Guest Log: copied the webapp to /var/www
2025-10-12 11:39:19 (12820): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-12 11:39:19 (12820): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-12 11:39:19 (12820): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 11:39:19 (12820): Guest Log:  *** Starting ATLAS job. (PandaID=6839386664 taskID=46676269) ***
2025-10-12 13:18:54 (12820): Status Report: Elapsed Time: '6000.000000'
2025-10-12 13:18:54 (12820): Status Report: CPU Time: '13905.734375'
2025-10-12 13:37:59 (12820): Guest Log:  *** Job finished ***
2025-10-12 13:37:59 (12820): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:21,624 | INFO     | [payload] control thread has finished
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:23,251 | INFO     | [data] queue_monitor thread has finished
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:53,761 | INFO     | [monitor] cgroup control has ended
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:54,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643416639296)>', '<ExcThread(monitor, started 139642447841024)>']
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:54,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:54,318 | INFO     | [monitor] control thread has ended
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,028 | INFO     | all workflow threads have been joined
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,028 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,028 | INFO     | traces error code: 0
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,076 [wrapper] ==== pilot stdout END ====
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,085 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,095 [wrapper] pilotpid: 5975
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,099 [wrapper] Pilot exit status: 0
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,148 [wrapper] pandaids: 6839386664
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,163 [wrapper] cleanup supervisor_pilot  1174 5976
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,168 [wrapper] Test setup, not cleaning
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,171 [wrapper] apfmon messages muted
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,173 [wrapper] ==== wrapper stdout END ====
2025-10-12 13:37:59 (12820): Guest Log: 2025-10-12 11:37:59,176 [wrapper] ==== wrapper stderr END ====
2025-10-12 13:37:59 (12820): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 13:37:59 (12820): Guest Log:     "exeErrorCode": 0,
2025-10-12 13:37:59 (12820): Guest Log:     "exeErrorDiag": "",
2025-10-12 13:37:59 (12820): Guest Log:     "pilotErrorCode": 0,
2025-10-12 13:37:59 (12820): Guest Log:     "pilotErrorDiag": "",
2025-10-12 13:37:59 (12820): Guest Log:  *** Listing of results directory ***
2025-10-12 13:37:59 (12820): Guest Log: total 188596
2025-10-12 13:37:59 (12820): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 04:11 pilot3.tar.gz
2025-10-12 13:37:59 (12820): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 04:14 queuedata.json
2025-10-12 13:37:59 (12820): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 04:15 runpilot2-wrapper.sh
2025-10-12 13:37:59 (12820): Guest Log: -rwxr-xr-x. 1 atlas atlas      8916 Oct 12 09:39 init_data.xml
2025-10-12 13:37:59 (12820): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 12 09:39 input.tar.gz
2025-10-12 13:37:59 (12820): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 09:39 start_atlas.sh
2025-10-12 13:37:59 (12820): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 09:39 EVNT.46676267._003281.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 13:37:59 (12820): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 09:39 pandaJob.out
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas    975536 Oct 12 09:39 agis_schedconf.cvmfs.json
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 09:39 agis_ddmendpoints.agis.ALL.json
2025-10-12 13:37:59 (12820): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 09:39 pilot3
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas 186930465 Oct 12 11:36 HITS.46676269._070960.pool.root.1
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 11:36 pilot_heartbeat.json
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 12 11:37 memory_monitor_summary.json
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas    284550 Oct 12 11:37 log.46676269._070960.job.log.tgz.1
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas      7805 Oct 12 11:37 heartbeat.json
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas      4798 Oct 12 11:37 pilotlog.txt
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas    889384 Oct 12 11:37 log.46676269._070960.job.log.1
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 11:37 output.list
2025-10-12 13:37:59 (12820): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 11:37 runtime_log
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas   1198080 Oct 12 11:37 result.tar.gz
2025-10-12 13:37:59 (12820): Guest Log: -rw-r--r--. 1 atlas atlas      8684 Oct 12 11:37 runtime_log.err
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas       669 Oct 12 11:37 hMAODmIf2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmhCTMDmilzeSm.diag
2025-10-12 13:37:59 (12820): Guest Log: Looking for outputfile HITS.46676269._070960.pool.root.1
2025-10-12 13:37:59 (12820): Guest Log: HITS file was successfully produced
2025-10-12 13:37:59 (12820): Guest Log: -rw-------. 1 atlas atlas 186930465 Oct 12 11:36 /home/atlas/RunAtlas/HITS.46676269._070960.pool.root.1
2025-10-12 13:38:00 (12820): Guest Log: Successfully finished the ATLAS job!
2025-10-12 13:38:00 (12820): Guest Log: Copying the results back to the shared directory!
2025-10-12 13:38:00 (12820): Guest Log:  *** Contents of shared directory: ***
2025-10-12 13:38:00 (12820): Guest Log: total 399784
2025-10-12 13:38:00 (12820): Guest Log: -rwxrwxrwx. 1 root root 220641493 Oct 12 09:38 ATLAS.root_0
2025-10-12 13:38:00 (12820): Guest Log: -rwxrwxrwx. 1 root root 186930465 Oct 12 11:38 HITS.pool.root.1
2025-10-12 13:38:00 (12820): Guest Log: -rwxrwxrwx. 1 root root      8916 Oct 12 09:38 init_data.xml
2025-10-12 13:38:00 (12820): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 12 09:38 input.tar.gz
2025-10-12 13:38:00 (12820): Guest Log: -rwxrwxrwx. 1 root root   1198080 Oct 12 11:38 result.tar.gz
2025-10-12 13:38:00 (12820): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 09:38 start_atlas.sh
2025-10-12 13:38:00 (12820): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 13:38:00 (12820): VM Completion File Detected.
2025-10-12 13:38:00 (12820): Powering off VM.
2025-10-12 13:38:00 (12820): Successfully stopped VM.
2025-10-12 13:38:00 (12820): Deregistering VM. (boinc_89a57ae92544e173, slot#1)
2025-10-12 13:38:00 (12820): Removing network bandwidth throttle group from VM.
2025-10-12 13:38:01 (12820): Removing VM from VirtualBox.
2025-10-12 13:38:06 (12820): called boinc_finish(0)

</stderr_txt>
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