Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:29:21 (394140): wrapper (7.7.26015): starting
11:29:21 (394140): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:29:21] Arguments: --nthreads 12
[2025-10-12 11:29:21] Threads: 12
[2025-10-12 11:29:21] Checking for CVMFS
[2025-10-12 11:29:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:29:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:29:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:29:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:29:24] 2.13.2.0 394421 0 25376 151615 3 1 1927613 4096000 0 130560 0 0 0.000 1291 1531 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 11:29:24] CVMFS is ok
[2025-10-12 11:29:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:29:24] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 11:29:24] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 11:29:24] Further information can be found at the LHC@home message board.
[2025-10-12 11:29:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:29:24] Checking for apptainer binary...
[2025-10-12 11:29:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:29:24] Running /usr/bin/apptainer --version
[2025-10-12 11:29:24] apptainer version 1.4.3
[2025-10-12 11:29:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:29:24] 9628
[2025-10-12 11:29:24] apptainer works
[2025-10-12 11:29:24] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:29:24] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:29:24] Starting ATLAS job with PandaID=6839386630
[2025-10-12 11:29:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:43:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:43:30] 2025-10-12 16:42:48,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:43:30] 2025-10-12 16:42:48,428 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:43:30] 2025-10-12 16:42:48,428 | INFO     | sum of square deviations: 23971959334.697247
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | sum of deviations: 176911350734.3169
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | mean x: 1760274372.2183099
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | mean y: 2626401.5234741783
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | -- intersect: -12988072961.185747
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | intersect: -12988072961.185747
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | chi2: 2.7174083057239558
[2025-10-12 18:43:30] 2025-10-12 16:42:48,431 | INFO     | sum of square deviations: 23137832369.586555
[2025-10-12 18:43:30] 2025-10-12 16:42:48,437 | INFO     | sum of deviations: 206602846424.52982
[2025-10-12 18:43:30] 2025-10-12 16:42:48,437 | INFO     | mean x: 1760274219.726841
[2025-10-12 18:43:30] 2025-10-12 16:42:48,437 | INFO     | mean y: 2631773.4133016625
[2025-10-12 18:43:30] 2025-10-12 16:42:48,437 | INFO     | -- intersect: -15715247865.187523
[2025-10-12 18:43:30] 2025-10-12 16:42:48,437 | INFO     | intersect: -15715247865.187523
[2025-10-12 18:43:30] 2025-10-12 16:42:48,438 | INFO     | chi2: 1.8272331690496564
[2025-10-12 18:43:30] 2025-10-12 16:42:48,438 | INFO     | current chi2=1.8272331690496564 (change=32.758240077475 %)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,438 | INFO     | sum of square deviations: 22323287166.91346
[2025-10-12 18:43:30] 2025-10-12 16:42:48,440 | INFO     | sum of deviations: 203499971678.88934
[2025-10-12 18:43:30] 2025-10-12 16:42:48,440 | INFO     | mean x: 1760274067.2355769
[2025-10-12 18:43:30] 2025-10-12 16:42:48,440 | INFO     | mean y: 2631192.439903846
[2025-10-12 18:43:30] 2025-10-12 16:42:48,440 | INFO     | -- intersect: -16044097058.247744
[2025-10-12 18:43:30] 2025-10-12 16:42:48,440 | INFO     | intersect: -16044097058.247744
[2025-10-12 18:43:30] 2025-10-12 16:42:48,444 | INFO     | chi2: 1.8258249265557276
[2025-10-12 18:43:30] 2025-10-12 16:42:48,444 | INFO     | current chi2=1.8258249265557276 (change=0.07706966564432592 %)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,444 | INFO     | right removable region: 415
[2025-10-12 18:43:30] 2025-10-12 16:42:48,445 | INFO     | sum of square deviations: 23137645709.586555
[2025-10-12 18:43:30] 2025-10-12 16:42:48,446 | INFO     | sum of deviations: 103926011356.70085
[2025-10-12 18:43:30] 2025-10-12 16:42:48,450 | INFO     | mean x: 1760274524.726841
[2025-10-12 18:43:30] 2025-10-12 16:42:48,450 | INFO     | mean y: 2639684.3539192397
[2025-10-12 18:43:30] 2025-10-12 16:42:48,450 | INFO     | -- intersect: -7903882549.75033
[2025-10-12 18:43:30] 2025-10-12 16:42:48,450 | INFO     | intersect: -7903882549.75033
[2025-10-12 18:43:30] 2025-10-12 16:42:48,451 | INFO     | chi2: 1.3180323269362115
[2025-10-12 18:43:30] 2025-10-12 16:42:48,451 | INFO     | current chi2=1.3180323269362115 (change=51.496713829868526 %)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,451 | INFO     | sum of square deviations: 22322913846.91346
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | sum of deviations: 73161132420.89415
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | mean x: 1760274677.2355769
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | mean y: 2645443.3990384615
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | -- intersect: -5766479933.402314
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | intersect: -5766479933.402314
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | chi2: 1.1815544957147084
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | current chi2=1.1815544957147084 (change=10.354664937448703 %)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,454 | INFO     | left removable region: 20
[2025-10-12 18:43:30] 2025-10-12 16:42:48,460 | INFO     | sum of square deviations: 19110158517.63028
[2025-10-12 18:43:30] 2025-10-12 16:42:48,462 | INFO     | sum of deviations: 44089244233.57978
[2025-10-12 18:43:30] 2025-10-12 16:42:48,462 | INFO     | mean x: 1760274646.7620254
[2025-10-12 18:43:30] 2025-10-12 16:42:48,462 | INFO     | mean y: 2662435.8253164557
[2025-10-12 18:43:30] 2025-10-12 16:42:48,462 | INFO     | -- intersect: -4058485395.4535365
[2025-10-12 18:43:30] 2025-10-12 16:42:48,462 | INFO     | intersect: -4058485395.4535365
[2025-10-12 18:43:30] 2025-10-12 16:42:48,463 | INFO     | chi2: 0.008398817819410825
[2025-10-12 18:43:30] 2025-10-12 16:42:48,463 | INFO     | -- intersect: -4058485395.4535365
[2025-10-12 18:43:30] 2025-10-12 16:42:48,463 | INFO     | current memory leak: 2.31 B/s (using 395 data points, chi2=0.01)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,463 | INFO     | could have reported an average CPU frequency of 2396 MHz (18 samples)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | ..............................
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . Timing measurements:
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . get job = 0 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . initial setup = 1 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . payload setup = 5 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . stage-in = 0 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . payload execution = 25951 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . stage-out = 1 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | . log creation = 0 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,464 | INFO     | ..............................
[2025-10-12 18:43:30] 2025-10-12 16:42:48,557 | INFO     | 
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | job summary report
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | --------------------------------------------------
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | PanDA job id: 6839386630
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | task id: 46676269
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | errors: (none)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | pilot state: finished 
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | transexitcode: 0
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | exeerrorcode: 0
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | exeerrordiag: 
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | exitcode: 0
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | exitmsg: OK
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | cpuconsumptiontime: 25411 s
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | nevents: 400
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | neventsw: 0
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | pid: 472827
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | pgrp: 472827
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | corecount: 12
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | event service: False
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 25960: 2385809, 25961: 2394807, 25962: 2394863, 25974: 2395185}
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | --------------------------------------------------
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | 
[2025-10-12 18:43:30] 2025-10-12 16:42:48,558 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,589 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:43:30] 2025-10-12 16:42:48,590 | INFO     | job 6839386630 has completed (purged errors)
[2025-10-12 18:43:30] 2025-10-12 16:42:48,590 | INFO     | overall cleanup function is called
[2025-10-12 18:43:30] 2025-10-12 16:42:49,600 | INFO     | --- collectZombieJob: --- 10, [472827]
[2025-10-12 18:43:30] 2025-10-12 16:42:49,601 | INFO     | zombie collector waiting for pid 472827
[2025-10-12 18:43:30] 2025-10-12 16:42:49,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:43:30] 2025-10-12 16:42:49,601 | INFO     | collected zombie processes
[2025-10-12 18:43:30] 2025-10-12 16:42:49,601 | INFO     | will attempt to kill all subprocesses of pid=472827
[2025-10-12 18:43:30] 2025-10-12 16:42:49,739 | INFO     | process IDs to be killed: [472827] (in reverse order)
[2025-10-12 18:43:30] 2025-10-12 16:42:49,813 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:43:30] 2025-10-12 16:42:49,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:43:30] 2025-10-12 16:42:49,815 | INFO     | did not find any defunct processes belonging to 472827
[2025-10-12 18:43:30] 2025-10-12 16:42:49,824 | INFO     | did not find any defunct processes belonging to 472827
[2025-10-12 18:43:30] 2025-10-12 16:42:49,824 | INFO     | ready for new job
[2025-10-12 18:43:30] 2025-10-12 16:42:49,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:43:30] 2025-10-12 16:42:49,827 | INFO     | ***************************************
[2025-10-12 18:43:30] 2025-10-12 16:42:49,835 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:43:30] 2025-10-12 16:42:49,835 | INFO     | ***************************************
[2025-10-12 18:43:30] 2025-10-12 16:42:49,836 | INFO     | 
[2025-10-12 18:43:30] 2025-10-12 16:42:49,836 | INFO     | pilot is running in a VM
[2025-10-12 18:43:30] 2025-10-12 16:42:49,836 | INFO     | architecture information:
[2025-10-12 18:43:30] 2025-10-12 16:42:49,840 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:43:30] 2025-10-12 16:42:49,878 | INFO     | cat /etc/os-release:
[2025-10-12 18:43:30] NAME="CentOS Linux"
[2025-10-12 18:43:30] VERSION="7 (Core)"
[2025-10-12 18:43:30] ID="centos"
[2025-10-12 18:43:30] ID_LIKE="rhel fedora"
[2025-10-12 18:43:30] VERSION_ID="7"
[2025-10-12 18:43:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:43:30] ANSI_COLOR="0;31"
[2025-10-12 18:43:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:43:30] HOME_URL="https://www.centos.org/"
[2025-10-12 18:43:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:43:30] 
[2025-10-12 18:43:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:43:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:43:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:43:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:43:30] 
[2025-10-12 18:43:30] 2025-10-12 16:42:49,879 | INFO     | ***************************************
[2025-10-12 18:43:30] 2025-10-12 16:42:50,385 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 18:43:30] 2025-10-12 16:42:50,426 | INFO     | sufficient remaining disk space (259696623616 B)
[2025-10-12 18:43:30] 2025-10-12 16:42:50,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:43:30] 2025-10-12 16:42:50,427 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:43:30] 2025-10-12 16:42:50,427 | INFO     | update_server=False
[2025-10-12 18:43:30] 2025-10-12 16:42:50,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:43:30] 2025-10-12 16:42:50,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:43:30] 2025-10-12 16:42:50,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:43:30] 2025-10-12 16:42:50,719 | INFO     | aborting loop
[2025-10-12 18:43:30] 2025-10-12 16:42:50,799 | INFO     | all data control threads have been joined
[2025-10-12 18:43:30] 2025-10-12 16:42:51,320 | INFO     | all payload control threads have been joined
[2025-10-12 18:43:30] 2025-10-12 16:42:51,435 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:51,436 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:51,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:43:30] 2025-10-12 16:42:51,656 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:51,723 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:51,804 | INFO     | [data] control thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:51,914 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:51,939 | INFO     | all job control threads have been joined
[2025-10-12 18:43:30] 2025-10-12 16:42:51,992 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:52,041 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:52,231 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:52,325 | INFO     | [payload] control thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:52,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:43:30] 2025-10-12 16:42:52,456 | INFO     | [job] validate thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:52,458 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:52,944 | INFO     | [job] control thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:53,508 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:42:56,438 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:43:01,257 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:43:30] 2025-10-12 16:43:02,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:43:30] 2025-10-12 16:43:21,264 | INFO     | PID=417024 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:43:30] 2025-10-12 16:43:21,264 | INFO     | .. there are 3 such processes running
[2025-10-12 18:43:30] 2025-10-12 16:43:21,271 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:43:30] 2025-10-12 16:43:21,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:43:30] 2025-10-12 16:43:21,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:43:30] 2025-10-12 16:43:23,501 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:43:30] 2025-10-12 16:43:25,144 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131776423757632)>', '<ExcThread(monitor, started 131775938410240)>']
[2025-10-12 18:43:30] 2025-10-12 16:43:25,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:43:30] 2025-10-12 16:43:25,293 | INFO     | [monitor] control thread has ended
[2025-10-12 18:43:30] 2025-10-12 16:43:30,170 | INFO     | all workflow threads have been joined
[2025-10-12 18:43:30] 2025-10-12 16:43:30,170 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:43:30] 2025-10-12 16:43:30,170 | INFO     | traces error code: 0
[2025-10-12 18:43:30] 2025-10-12 16:43:30,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:43:30] 2025-10-12 16:43:30,458 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:43:30] 2025-10-12 16:43:30,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:43:30] 2025-10-12 16:43:30,471 [wrapper] pilotpid: 417024
[2025-10-12 18:43:30] 2025-10-12 16:43:30,483 [wrapper] Pilot exit status: 0
[2025-10-12 18:43:30] 2025-10-12 16:43:30,506 [wrapper] pandaids: 6839386630
[2025-10-12 18:43:30] 2025-10-12 16:43:30,555 [wrapper] cleanup supervisor_pilot  799885 417025
[2025-10-12 18:43:30] 2025-10-12 16:43:30,563 [wrapper] Test setup, not cleaning
[2025-10-12 18:43:30] 2025-10-12 16:43:30,569 [wrapper] apfmon messages muted
[2025-10-12 18:43:30] 2025-10-12 16:43:30,576 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:43:30] 2025-10-12 16:43:30,581 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:43:30]  *** Error codes and diagnostics ***
[2025-10-12 18:43:30]     "exeErrorCode": 0,
[2025-10-12 18:43:30]     "exeErrorDiag": "",
[2025-10-12 18:43:30]     "pilotErrorCode": 0,
[2025-10-12 18:43:30]     "pilotErrorDiag": "",
[2025-10-12 18:43:30]  *** Listing of results directory ***
[2025-10-12 18:43:30] total 421140
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:04 pilot3.tar.gz
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:10 queuedata.json
[2025-10-12 18:43:30] -rwx------ 1 boinc boinc     36292 Oct 12 06:11 runpilot2-wrapper.sh
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:43:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:29 run_atlas
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:29 job.xml
[2025-10-12 18:43:30] -rw-r--r-- 2 boinc boinc 221352683 Oct 12 11:29 EVNT.46676267._003264.pool.root.1
[2025-10-12 18:43:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:29 start_atlas.sh
[2025-10-12 18:43:30] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:29 shared
[2025-10-12 18:43:30] -rw-r--r-- 2 boinc boinc    569678 Oct 12 11:29 input.tar.gz
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc      6401 Oct 12 11:29 init_data.xml
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:29 boinc_setup_complete
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:29 boinc_lockfile
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc      2550 Oct 12 11:29 pandaJob.out
[2025-10-12 18:43:30] -rw------- 1 boinc boinc    975536 Oct 12 11:29 agis_schedconf.cvmfs.json
[2025-10-12 18:43:30] drwx------ 5 boinc boinc      4096 Oct 12 11:29 pilot3
[2025-10-12 18:43:30] -rw------- 1 boinc boinc 197667080 Oct 12 18:42 HITS.46676269._070926.pool.root.1
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc       531 Oct 12 18:42 boinc_task_state.xml
[2025-10-12 18:43:30] -rw------- 1 boinc boinc      1013 Oct 12 18:42 memory_monitor_summary.json
[2025-10-12 18:43:30] -rw------- 1 boinc boinc   1560580 Oct 12 18:42 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:43:30] -rw------- 1 boinc boinc    690780 Oct 12 18:42 log.46676269._070926.job.log.tgz.1
[2025-10-12 18:43:30] -rw------- 1 boinc boinc      7710 Oct 12 18:42 heartbeat.json
[2025-10-12 18:43:30] -rw------- 1 boinc boinc        95 Oct 12 18:43 pilot_heartbeat.json
[2025-10-12 18:43:30] -rw------- 1 boinc boinc      4957 Oct 12 18:43 pilotlog.txt
[2025-10-12 18:43:30] -rw------- 1 boinc boinc   3469899 Oct 12 18:43 log.46676269._070926.job.log.1
[2025-10-12 18:43:30] -rw------- 1 boinc boinc       357 Oct 12 18:43 output.list
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc        28 Oct 12 18:43 wrapper_checkpoint.txt
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:43 runtime_log
[2025-10-12 18:43:30] -rw------- 1 boinc boinc   4177920 Oct 12 18:43 result.tar.gz
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:43 boinc_mmap_file
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc      8639 Oct 12 18:43 runtime_log.err
[2025-10-12 18:43:30] -rw------- 1 boinc boinc       641 Oct 12 18:43 eolKDmeb2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0ATMDmintfNo.diag
[2025-10-12 18:43:30] -rw-r--r-- 1 boinc boinc     20976 Oct 12 18:43 stderr.txt
[2025-10-12 18:43:30] HITS file was successfully produced:
[2025-10-12 18:43:30] -rw------- 1 boinc boinc 197667080 Oct 12 18:42 shared/HITS.pool.root.1
[2025-10-12 18:43:30]  *** Contents of shared directory: ***
[2025-10-12 18:43:30] total 413868
[2025-10-12 18:43:30] -rw-r--r-- 2 boinc boinc 221352683 Oct 12 11:29 ATLAS.root_0
[2025-10-12 18:43:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:29 start_atlas.sh
[2025-10-12 18:43:30] -rw-r--r-- 2 boinc boinc    569678 Oct 12 11:29 input.tar.gz
[2025-10-12 18:43:30] -rw------- 1 boinc boinc 197667080 Oct 12 18:42 HITS.pool.root.1
[2025-10-12 18:43:30] -rw------- 1 boinc boinc   4177920 Oct 12 18:43 result.tar.gz
18:43:32 (394140): run_atlas exited; CPU time 25539.743126
18:43:32 (394140): called boinc_finish(0)

</stderr_txt>
]]>

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