Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:29:25 (395690): wrapper (7.7.26015): starting
11:29:25 (395690): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:29:25] Arguments: --nthreads 12
[2025-10-12 11:29:25] Threads: 12
[2025-10-12 11:29:25] Checking for CVMFS
[2025-10-12 11:29:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:29:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:29:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:29:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:29:25] 2.13.2.0 394421 0 27552 151615 3 4 1929443 4096000 51 130560 0 2226 99.910 2259 2535 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 11:29:25] CVMFS is ok
[2025-10-12 11:29:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:29:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 11:29:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 11:29:25] Further information can be found at the LHC@home message board.
[2025-10-12 11:29:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:29:25] Checking for apptainer binary...
[2025-10-12 11:29:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:29:25] Running /usr/bin/apptainer --version
[2025-10-12 11:29:25] apptainer version 1.4.3
[2025-10-12 11:29:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:29:25] 9628
[2025-10-12 11:29:25] apptainer works
[2025-10-12 11:29:25] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:29:25] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:29:25] Starting ATLAS job with PandaID=6839385085
[2025-10-12 11:29:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:40:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:40:30] 2025-10-12 16:39:32,780 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:40:30] 2025-10-12 16:39:32,789 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:40:30] 2025-10-12 16:39:32,792 | INFO     | sum of square deviations: 23303043703.943024
[2025-10-12 18:40:30] 2025-10-12 16:39:32,798 | INFO     | sum of deviations: 83033513610.57344
[2025-10-12 18:40:30] 2025-10-12 16:39:32,799 | INFO     | mean x: 1760274250.2180095
[2025-10-12 18:40:30] 2025-10-12 16:39:32,799 | INFO     | mean y: 2638478.63507109
[2025-10-12 18:40:30] 2025-10-12 16:39:32,799 | INFO     | -- intersect: -6269578909.391693
[2025-10-12 18:40:30] 2025-10-12 16:39:32,799 | INFO     | intersect: -6269578909.391693
[2025-10-12 18:40:30] 2025-10-12 16:39:32,799 | INFO     | chi2: 2.298817132853123
[2025-10-12 18:40:30] 2025-10-12 16:39:32,799 | INFO     | sum of square deviations: 22484599838.834595
[2025-10-12 18:40:30] 2025-10-12 16:39:32,802 | INFO     | sum of deviations: 112300207919.88506
[2025-10-12 18:40:30] 2025-10-12 16:39:32,802 | INFO     | mean x: 1760274097.7266188
[2025-10-12 18:40:30] 2025-10-12 16:39:32,803 | INFO     | mean y: 2643876.2446043165
[2025-10-12 18:40:30] 2025-10-12 16:39:32,803 | INFO     | -- intersect: -8789113530.496655
[2025-10-12 18:40:30] 2025-10-12 16:39:32,803 | INFO     | intersect: -8789113530.496655
[2025-10-12 18:40:30] 2025-10-12 16:39:32,803 | INFO     | chi2: 1.4684814483115687
[2025-10-12 18:40:30] 2025-10-12 16:39:32,803 | INFO     | current chi2=1.4684814483115687 (change=36.120127724600806 %)
[2025-10-12 18:40:30] 2025-10-12 16:39:32,803 | INFO     | sum of square deviations: 21685551686.162735
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | sum of deviations: 110249262999.12617
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | mean x: 1760273945.235437
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | mean y: 2643484.854368932
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | -- intersect: -8946582614.964153
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | intersect: -8946582614.964153
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | chi2: 1.4685682052789895
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | current chi2=1.4685682052789895 (change=-0.005907937585491954 %)
[2025-10-12 18:40:30] 2025-10-12 16:39:32,809 | INFO     | right removable region: 411
[2025-10-12 18:40:30] 2025-10-12 16:39:32,810 | INFO     | sum of square deviations: 22484415008.834583
[2025-10-12 18:40:30] 2025-10-12 16:39:32,811 | INFO     | sum of deviations: 8757853807.55394
[2025-10-12 18:40:30] 2025-10-12 16:39:32,811 | INFO     | mean x: 1760274402.7266188
[2025-10-12 18:40:30] 2025-10-12 16:39:32,811 | INFO     | mean y: 2652256.0311750597
[2025-10-12 18:40:30] 2025-10-12 16:39:32,811 | INFO     | -- intersect: -682988258.7076656
[2025-10-12 18:40:30] 2025-10-12 16:39:32,811 | INFO     | intersect: -682988258.7076656
[2025-10-12 18:40:30] 2025-10-12 16:39:32,812 | INFO     | chi2: 0.8485695655193655
[2025-10-12 18:40:30] 2025-10-12 16:39:32,812 | INFO     | current chi2=0.8485695655193655 (change=63.08668691423126 %)
[2025-10-12 18:40:30] 2025-10-12 16:39:32,812 | INFO     | sum of square deviations: 21685207585.630924
[2025-10-12 18:40:30] 2025-10-12 16:39:32,820 | INFO     | sum of deviations: 4451929369.388359
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | mean x: 1760274555.2330098
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | mean y: 2653076.1626213593
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | -- intersect: -358727738.83227754
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | intersect: -358727738.83227754
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | chi2: 0.8463054512062079
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | current chi2=0.8463054512062079 (change=0.26681540384632957 %)
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | left removable region: 20
[2025-10-12 18:40:30] 2025-10-12 16:39:32,821 | INFO     | sum of square deviations: 18535486056.879803
[2025-10-12 18:40:30] 2025-10-12 16:39:32,839 | INFO     | sum of deviations: 29237951119.841423
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | mean x: 1760274524.7621484
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | mean y: 2659241.664961637
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | -- intersect: -2774004955.5706367
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | intersect: -2774004955.5706367
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | chi2: 0.005416260194043004
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | -- intersect: -2774004955.5706367
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | current memory leak: 1.58 B/s (using 391 data points, chi2=0.01)
[2025-10-12 18:40:30] 2025-10-12 16:39:32,840 | INFO     | could have reported an average CPU frequency of 2396 MHz (17 samples)
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | ..............................
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . Timing measurements:
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . get job = 0 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . initial setup = 1 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . payload setup = 5 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . stage-in = 0 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . payload execution = 25746 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . stage-out = 3 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | . log creation = 0 s
[2025-10-12 18:40:30] 2025-10-12 16:39:32,841 | INFO     | ..............................
[2025-10-12 18:40:30] 2025-10-12 16:39:33,029 | INFO     | 
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | job summary report
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | --------------------------------------------------
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | PanDA job id: 6839385085
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | task id: 46676269
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | errors: (none)
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | pilot state: finished 
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | transexitcode: 0
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | exeerrorcode: 0
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | exeerrordiag: 
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | exitcode: 0
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | exitmsg: OK
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | cpuconsumptiontime: 25108 s
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | nevents: 400
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | neventsw: 0
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | pid: 472741
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | pgrp: 472741
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | corecount: 12
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | event service: False
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | sizes: {0: 2348855, 4: 2349117, 11: 2349145, 25756: 2385698, 25760: 2394752, 25779: 2394954}
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | --------------------------------------------------
[2025-10-12 18:40:30] 2025-10-12 16:39:33,030 | INFO     | 
[2025-10-12 18:40:30] 2025-10-12 16:39:33,031 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-12 18:40:30] 2025-10-12 16:39:33,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:40:30] 2025-10-12 16:39:33,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,072 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:40:30] 2025-10-12 16:39:33,072 | INFO     | job 6839385085 has completed (purged errors)
[2025-10-12 18:40:30] 2025-10-12 16:39:33,072 | INFO     | overall cleanup function is called
[2025-10-12 18:40:30] 2025-10-12 16:39:34,090 | INFO     | --- collectZombieJob: --- 10, [472741]
[2025-10-12 18:40:30] 2025-10-12 16:39:34,091 | INFO     | zombie collector waiting for pid 472741
[2025-10-12 18:40:30] 2025-10-12 16:39:34,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:40:30] 2025-10-12 16:39:34,091 | INFO     | collected zombie processes
[2025-10-12 18:40:30] 2025-10-12 16:39:34,091 | INFO     | will attempt to kill all subprocesses of pid=472741
[2025-10-12 18:40:30] 2025-10-12 16:39:34,409 | INFO     | process IDs to be killed: [472741] (in reverse order)
[2025-10-12 18:40:30] 2025-10-12 16:39:34,572 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:40:30] 2025-10-12 16:39:34,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:40:30] 2025-10-12 16:39:34,576 | INFO     | did not find any defunct processes belonging to 472741
[2025-10-12 18:40:30] 2025-10-12 16:39:34,586 | INFO     | did not find any defunct processes belonging to 472741
[2025-10-12 18:40:30] 2025-10-12 16:39:34,586 | INFO     | ready for new job
[2025-10-12 18:40:30] 2025-10-12 16:39:34,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:40:30] 2025-10-12 16:39:34,593 | INFO     | ***************************************
[2025-10-12 18:40:30] 2025-10-12 16:39:34,593 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:40:30] 2025-10-12 16:39:34,593 | INFO     | ***************************************
[2025-10-12 18:40:30] 2025-10-12 16:39:34,593 | INFO     | 
[2025-10-12 18:40:30] 2025-10-12 16:39:34,593 | INFO     | pilot is running in a VM
[2025-10-12 18:40:30] 2025-10-12 16:39:34,593 | INFO     | architecture information:
[2025-10-12 18:40:30] 2025-10-12 16:39:34,605 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:40:30] 2025-10-12 16:39:34,666 | INFO     | cat /etc/os-release:
[2025-10-12 18:40:30] NAME="CentOS Linux"
[2025-10-12 18:40:30] VERSION="7 (Core)"
[2025-10-12 18:40:30] ID="centos"
[2025-10-12 18:40:30] ID_LIKE="rhel fedora"
[2025-10-12 18:40:30] VERSION_ID="7"
[2025-10-12 18:40:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:40:30] ANSI_COLOR="0;31"
[2025-10-12 18:40:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:40:30] HOME_URL="https://www.centos.org/"
[2025-10-12 18:40:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:40:30] 
[2025-10-12 18:40:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:40:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:40:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:40:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:40:30] 
[2025-10-12 18:40:30] 2025-10-12 16:39:34,666 | INFO     | ***************************************
[2025-10-12 18:40:30] 2025-10-12 16:39:35,168 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-12 18:40:30] 2025-10-12 16:39:35,223 | INFO     | sufficient remaining disk space (257516634112 B)
[2025-10-12 18:40:30] 2025-10-12 16:39:35,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:40:30] 2025-10-12 16:39:35,223 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:40:30] 2025-10-12 16:39:35,223 | INFO     | update_server=False
[2025-10-12 18:40:30] 2025-10-12 16:39:35,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:40:30] 2025-10-12 16:39:35,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:40:30] 2025-10-12 16:39:35,610 | INFO     | aborting loop
[2025-10-12 18:40:30] 2025-10-12 16:39:36,069 | INFO     | all payload control threads have been joined
[2025-10-12 18:40:30] 2025-10-12 16:39:36,160 | INFO     | all job control threads have been joined
[2025-10-12 18:40:30] 2025-10-12 16:39:36,171 | INFO     | all data control threads have been joined
[2025-10-12 18:40:30] 2025-10-12 16:39:36,228 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:36,328 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:36,614 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:36,640 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:36,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:40:30] 2025-10-12 16:39:36,845 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,074 | INFO     | [payload] control thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,106 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,107 | INFO     | [job] validate thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,135 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,165 | INFO     | [job] control thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,176 | INFO     | [data] control thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,258 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:37,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:40:30] 2025-10-12 16:39:38,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:40:30] 2025-10-12 16:39:38,714 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:39,057 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:41,850 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:39:45,846 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:40:30] 2025-10-12 16:39:46,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:40:30] 2025-10-12 16:40:05,765 | INFO     | PID=417014 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 18:40:30] 2025-10-12 16:40:05,765 | INFO     | .. there are 7 such processes running
[2025-10-12 18:40:30] 2025-10-12 16:40:05,766 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:40:30] 2025-10-12 16:40:05,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:40:30] 2025-10-12 16:40:05,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:40:30] 2025-10-12 16:40:23,221 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:40:30] 2025-10-12 16:40:24,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690287732544)>', '<ExcThread(monitor, started 139689398867712)>']
[2025-10-12 18:40:30] 2025-10-12 16:40:24,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:40:30] 2025-10-12 16:40:24,877 | INFO     | [monitor] control thread has ended
[2025-10-12 18:40:30] 2025-10-12 16:40:29,357 | INFO     | all workflow threads have been joined
[2025-10-12 18:40:30] 2025-10-12 16:40:29,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:40:30] 2025-10-12 16:40:29,358 | INFO     | traces error code: 0
[2025-10-12 18:40:30] 2025-10-12 16:40:29,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:40:30] 2025-10-12 16:40:29,782 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:40:30] 2025-10-12 16:40:29,794 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:40:30] 2025-10-12 16:40:29,802 [wrapper] pilotpid: 417014
[2025-10-12 18:40:30] 2025-10-12 16:40:29,810 [wrapper] Pilot exit status: 0
[2025-10-12 18:40:30] 2025-10-12 16:40:29,840 [wrapper] pandaids: 6839385085
[2025-10-12 18:40:30] 2025-10-12 16:40:29,891 [wrapper] cleanup supervisor_pilot  799898 417017
[2025-10-12 18:40:30] 2025-10-12 16:40:29,901 [wrapper] Test setup, not cleaning
[2025-10-12 18:40:30] 2025-10-12 16:40:29,906 [wrapper] apfmon messages muted
[2025-10-12 18:40:30] 2025-10-12 16:40:29,912 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:40:30] 2025-10-12 16:40:29,916 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:40:30]  *** Error codes and diagnostics ***
[2025-10-12 18:40:30]     "exeErrorCode": 0,
[2025-10-12 18:40:30]     "exeErrorDiag": "",
[2025-10-12 18:40:30]     "pilotErrorCode": 0,
[2025-10-12 18:40:30]     "pilotErrorDiag": "",
[2025-10-12 18:40:30]  *** Listing of results directory ***
[2025-10-12 18:40:30] total 419252
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc    557409 Oct 12 05:35 pilot3.tar.gz
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:58 queuedata.json
[2025-10-12 18:40:30] -rwx------ 1 boinc boinc     36292 Oct 12 05:58 runpilot2-wrapper.sh
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc       100 Oct 12 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:40:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 11:29 run_atlas
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc       105 Oct 12 11:29 job.xml
[2025-10-12 18:40:30] -rw-r--r-- 2 boinc boinc 222359834 Oct 12 11:29 EVNT.46676267._003226.pool.root.1
[2025-10-12 18:40:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:29 start_atlas.sh
[2025-10-12 18:40:30] drwxrwx--x 2 boinc boinc      4096 Oct 12 11:29 shared
[2025-10-12 18:40:30] -rw-r--r-- 2 boinc boinc    569682 Oct 12 11:29 input.tar.gz
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc      6401 Oct 12 11:29 init_data.xml
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:29 boinc_setup_complete
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc         0 Oct 12 11:29 boinc_lockfile
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc      2549 Oct 12 11:29 pandaJob.out
[2025-10-12 18:40:30] -rw------- 1 boinc boinc    975536 Oct 12 11:29 agis_schedconf.cvmfs.json
[2025-10-12 18:40:30] drwx------ 5 boinc boinc      4096 Oct 12 11:29 pilot3
[2025-10-12 18:40:30] -rw------- 1 boinc boinc 194895571 Oct 12 18:37 HITS.46676269._070329.pool.root.1
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc       531 Oct 12 18:38 boinc_task_state.xml
[2025-10-12 18:40:30] -rw------- 1 boinc boinc      1013 Oct 12 18:39 memory_monitor_summary.json
[2025-10-12 18:40:30] -rw------- 1 boinc boinc   1560580 Oct 12 18:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:40:30] -rw------- 1 boinc boinc    656768 Oct 12 18:39 log.46676269._070329.job.log.tgz.1
[2025-10-12 18:40:30] -rw------- 1 boinc boinc      7709 Oct 12 18:39 heartbeat.json
[2025-10-12 18:40:30] -rw------- 1 boinc boinc        95 Oct 12 18:40 pilot_heartbeat.json
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc      8192 Oct 12 18:40 boinc_mmap_file
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc        28 Oct 12 18:40 wrapper_checkpoint.txt
[2025-10-12 18:40:30] -rw------- 1 boinc boinc      4957 Oct 12 18:40 pilotlog.txt
[2025-10-12 18:40:30] -rw------- 1 boinc boinc   3417182 Oct 12 18:40 log.46676269._070329.job.log.1
[2025-10-12 18:40:30] -rw------- 1 boinc boinc       357 Oct 12 18:40 output.list
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc       620 Oct 12 18:40 runtime_log
[2025-10-12 18:40:30] -rw------- 1 boinc boinc   4096000 Oct 12 18:40 result.tar.gz
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc      8639 Oct 12 18:40 runtime_log.err
[2025-10-12 18:40:30] -rw------- 1 boinc boinc       640 Oct 12 18:40 U7PMDmJP2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDml7SMDmsSBken.diag
[2025-10-12 18:40:30] -rw-r--r-- 1 boinc boinc     20967 Oct 12 18:40 stderr.txt
[2025-10-12 18:40:30] HITS file was successfully produced:
[2025-10-12 18:40:30] -rw------- 1 boinc boinc 194895571 Oct 12 18:37 shared/HITS.pool.root.1
[2025-10-12 18:40:30]  *** Contents of shared directory: ***
[2025-10-12 18:40:30] total 412064
[2025-10-12 18:40:30] -rw-r--r-- 2 boinc boinc 222359834 Oct 12 11:29 ATLAS.root_0
[2025-10-12 18:40:30] -rw-r--r-- 2 boinc boinc     15120 Oct 12 11:29 start_atlas.sh
[2025-10-12 18:40:30] -rw-r--r-- 2 boinc boinc    569682 Oct 12 11:29 input.tar.gz
[2025-10-12 18:40:30] -rw------- 1 boinc boinc 194895571 Oct 12 18:37 HITS.pool.root.1
[2025-10-12 18:40:30] -rw------- 1 boinc boinc   4096000 Oct 12 18:40 result.tar.gz
18:40:31 (395690): run_atlas exited; CPU time 25240.549947
18:40:31 (395690): called boinc_finish(0)

</stderr_txt>
]]>

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