Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 11:38:51 (18288): vboxwrapper version 26210
2025-10-12 11:38:51 (18288): BOINC client version: 8.2.4
2025-10-12 11:38:52 (18288): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-12 11:38:52 (18288): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 11:38:52 (18288): Create VM. (boinc_af5ee51c8ef76363, slot#1)
2025-10-12 11:38:53 (18288): Setting Memory Size for VM. (4600MB)
2025-10-12 11:38:53 (18288): Setting CPU Count for VM. (6)
2025-10-12 11:38:53 (18288): Setting Chipset Options for VM.
2025-10-12 11:38:53 (18288): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 11:38:54 (18288): Setting Boot Options for VM.
2025-10-12 11:38:54 (18288): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 11:38:54 (18288): Enabling VM Network Access.
2025-10-12 11:38:55 (18288): Disabling USB Support for VM.
2025-10-12 11:38:55 (18288): Disabling COM Port Support for VM.
2025-10-12 11:38:55 (18288): Disabling LPT Port Support for VM.
2025-10-12 11:38:55 (18288): Disabling Audio Support for VM.
2025-10-12 11:38:56 (18288): Disabling Clipboard Support for VM.
2025-10-12 11:38:56 (18288): Disabling Drag and Drop Support for VM.
2025-10-12 11:38:56 (18288): Adding storage controller(s) to VM.
2025-10-12 11:38:56 (18288): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 11:38:57 (18288): Adding VirtualBox Guest Additions to VM.
2025-10-12 11:38:57 (18288): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 11:38:57 (18288): forwarding host port 51653 to guest port 80
2025-10-12 11:38:58 (18288): Enabling remote desktop for VM.
2025-10-12 11:38:58 (18288): Enabling shared directory for VM.
2025-10-12 11:38:59 (18288): Starting VM using VBoxManage interface. (boinc_af5ee51c8ef76363, slot#1)
2025-10-12 11:39:03 (18288): Successfully started VM. (PID = '8332')
2025-10-12 11:39:03 (18288): Reporting VM Process ID to BOINC.
2025-10-12 11:39:03 (18288): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-12 11:39:03 (18288): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 11:39:03 (18288): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 11:39:03 (18288): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 11:39:03 (18288): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 11:39:03 (18288): Detected: Web Application Enabled (http://localhost:51653)
2025-10-12 11:39:03 (18288): Detected: Remote Desktop Enabled (localhost:51654)
2025-10-12 11:39:03 (18288): Preference change detected
2025-10-12 11:39:03 (18288): Setting CPU throttle for VM. (100%)
2025-10-12 11:39:03 (18288): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 11:39:05 (18288): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 11:39:05 (18288): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 11:39:08 (18288): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 11:39:08 (18288): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 11:39:08 (18288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 11:39:11 (18288): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 11:39:11 (18288): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 11:39:13 (18288): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000055 main     Log opened 2025-10-12T11:39:12.005728000Z
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000120 main     OS Product: Linux
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000135 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000150 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000164 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000164 main     Process ID: 1343
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000164 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 11:39:13 (18288): Guest Log: 00:00:00.000497 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 11:39:13 (18288): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 11:39:13 (18288): Guest Log: [INFO] Mounting shared directory
2025-10-12 11:39:14 (18288): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 11:39:17 (18288): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 11:39:17 (18288): Guest Log: [INFO] Detected branch: prod
2025-10-12 11:39:17 (18288): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 11:39:17 (18288): Guest Log: Copying input files
2025-10-12 11:39:18 (18288): Guest Log: Copied input files into RunAtlas.
2025-10-12 11:39:18 (18288): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 11:39:18 (18288): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 11:39:18 (18288): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 11:39:18 (18288): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 11:39:23 (18288): Guest Log: 00:00:10.002508 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 214 561 000ns (GuestNow=1 760 287 163 221 350 000 ns GuestLast=1 760 269 152 006 789 000 ns fSetTimeLastLoop=true )
2025-10-12 11:39:25 (18288): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 11:39:25 (18288): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 11:39:25 (18288): Guest Log: 2.6.3.0 1623 0 30132 151627 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 11:39:25 (18288): Guest Log: copied the webapp to /var/www
2025-10-12 11:39:25 (18288): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-12 11:39:25 (18288): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-12 11:39:26 (18288): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 11:39:26 (18288): Guest Log:  *** Starting ATLAS job. (PandaID=6826211760 taskID=46373048) ***
2025-10-12 13:19:05 (18288): Status Report: Elapsed Time: '6000.000000'
2025-10-12 13:19:05 (18288): Status Report: CPU Time: '32369.312500'
2025-10-12 13:25:00 (18288): Guest Log:  *** Job finished ***
2025-10-12 13:25:00 (18288): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:03,514 | INFO     | [job] validate thread has finished
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:05,240 | INFO     | [data] queue_monitor thread has finished
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:48,671 | INFO     | [monitor] cgroup control has ended
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:50,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943203333952)>', '<ExcThread(monitor, started 139942751614720)>']
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:50,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:50,324 | INFO     | [monitor] control thread has ended
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,094 | INFO     | all workflow threads have been joined
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,094 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,094 | INFO     | traces error code: 0
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,183 [wrapper] ==== pilot stdout END ====
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,187 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,191 [wrapper] pilotpid: 6034
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:55,193 [wrapper] Pilot exit status: 0
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:57,503 [wrapper] pandaids: 6826211760
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:57,527 [wrapper] cleanup supervisor_pilot  2121 6035
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:57,530 [wrapper] Test setup, not cleaning
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:57,534 [wrapper] apfmon messages muted
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:57,538 [wrapper] ==== wrapper stdout END ====
2025-10-12 13:25:00 (18288): Guest Log: 2025-10-12 18:24:57,542 [wrapper] ==== wrapper stderr END ====
2025-10-12 13:25:00 (18288): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 13:25:00 (18288): Guest Log:     "exeErrorCode": 0,
2025-10-12 13:25:00 (18288): Guest Log:     "exeErrorDiag": "",
2025-10-12 13:25:00 (18288): Guest Log:     "pilotErrorCode": 0,
2025-10-12 13:25:00 (18288): Guest Log:     "pilotErrorDiag": "",
2025-10-12 13:25:00 (18288): Guest Log:  *** Listing of results directory ***
2025-10-12 13:25:00 (18288): Guest Log: total 203648
2025-10-12 13:25:00 (18288): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Sep 30 23:23 pilot3.tar.gz
2025-10-12 13:25:00 (18288): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Sep 30 23:25 queuedata.json
2025-10-12 13:25:00 (18288): Guest Log: -rwx------. 1 atlas atlas     36292 Sep 30 23:27 runpilot2-wrapper.sh
2025-10-12 13:25:00 (18288): Guest Log: -rwxr-xr-x. 1 atlas atlas    565608 Oct 12 16:39 input.tar.gz
2025-10-12 13:25:00 (18288): Guest Log: -rwxr-xr-x. 1 atlas atlas      8875 Oct 12 16:39 init_data.xml
2025-10-12 13:25:00 (18288): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 16:39 start_atlas.sh
2025-10-12 13:25:00 (18288): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 16:39 EVNT.46373045._002407.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 13:25:00 (18288): Guest Log: -rw-r--r--. 1 atlas atlas      2538 Oct 12 16:39 pandaJob.out
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 12 16:41 agis_schedconf.cvmfs.json
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 16:41 agis_ddmendpoints.agis.ALL.json
2025-10-12 13:25:00 (18288): Guest Log: drwx------. 4 atlas atlas      4096 Oct 12 16:41 pilot3
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 18:23 pilot_heartbeat.json
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas 202395646 Oct 12 18:23 HITS.46373048._072912.pool.root.1
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 12 18:23 memory_monitor_summary.json
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas    316925 Oct 12 18:23 log.46373048._072912.job.log.tgz.1
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas      7763 Oct 12 18:23 heartbeat.json
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas      4612 Oct 12 18:24 pilotlog.txt
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas    842830 Oct 12 18:24 log.46373048._072912.job.log.1
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 18:24 output.list
2025-10-12 13:25:00 (18288): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 18:24 runtime_log
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas   1177600 Oct 12 18:24 result.tar.gz
2025-10-12 13:25:00 (18288): Guest Log: -rw-r--r--. 1 atlas atlas      8620 Oct 12 18:24 runtime_log.err
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas       650 Oct 12 18:24 kMcLDmkvyN8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4JANDmvZZRGm.diag
2025-10-12 13:25:00 (18288): Guest Log: Looking for outputfile HITS.46373048._072912.pool.root.1
2025-10-12 13:25:00 (18288): Guest Log: HITS file was successfully produced
2025-10-12 13:25:00 (18288): Guest Log: -rw-------. 1 atlas atlas 202395646 Oct 12 18:23 /home/atlas/RunAtlas/HITS.46373048._072912.pool.root.1
2025-10-12 13:25:01 (18288): Guest Log: Successfully finished the ATLAS job!
2025-10-12 13:25:01 (18288): Guest Log: Copying the results back to the shared directory!
2025-10-12 13:25:01 (18288): Guest Log:  *** Contents of shared directory: ***
2025-10-12 13:25:01 (18288): Guest Log: total 415648
2025-10-12 13:25:01 (18288): Guest Log: -rwxrwxrwx. 1 root root 221447163 Oct 12 16:38 ATLAS.root_0
2025-10-12 13:25:01 (18288): Guest Log: -rwxrwxrwx. 1 root root 202395646 Oct 12  2025 HITS.pool.root.1
2025-10-12 13:25:01 (18288): Guest Log: -rwxrwxrwx. 1 root root      8875 Oct 12 16:38 init_data.xml
2025-10-12 13:25:01 (18288): Guest Log: -rwxrwxrwx. 1 root root    565608 Oct 12 09:40 input.tar.gz
2025-10-12 13:25:01 (18288): Guest Log: -rwxrwxrwx. 1 root root   1177600 Oct 12  2025 result.tar.gz
2025-10-12 13:25:01 (18288): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 09:40 start_atlas.sh
2025-10-12 13:25:01 (18288): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 13:25:01 (18288): VM Completion File Detected.
2025-10-12 13:25:01 (18288): Powering off VM.
2025-10-12 13:25:02 (18288): Successfully stopped VM.
2025-10-12 13:25:02 (18288): Deregistering VM. (boinc_af5ee51c8ef76363, slot#1)
2025-10-12 13:25:02 (18288): Removing network bandwidth throttle group from VM.
2025-10-12 13:25:02 (18288): Removing VM from VirtualBox.
2025-10-12 13:25:07 (18288): called boinc_finish(0)

</stderr_txt>
]]>

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