Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:19:06 (5870): wrapper (7.7.26015): starting
05:19:06 (5870): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 05:19:06] Arguments: --nthreads 8
[2025-10-12 05:19:06] Threads: 8
[2025-10-12 05:19:06] Checking for CVMFS
[2025-10-12 05:19:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:19:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:19:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:19:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:19:06] 2.11.2.0 3213 627629 248604 151615 0 62 10400078 20275201 917 130560 1 358262201 99.992 26057954 20169 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:19:06] CVMFS is ok
[2025-10-12 05:19:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:19:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:19:06] Further information can be found at the LHC@home message board.
[2025-10-12 05:19:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:19:06] Checking for apptainer binary...
[2025-10-12 05:19:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:19:06] Running /usr/bin/apptainer --version
[2025-10-12 05:19:06] apptainer version 1.3.2-1.el7
[2025-10-12 05:19:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:19:06] c-205-38.aglt2.org
[2025-10-12 05:19:06] apptainer works
[2025-10-12 05:19:06] Set ATHENA_PROC_NUMBER=8
[2025-10-12 05:19:06] Set ATHENA_CORE_NUMBER=8
[2025-10-12 05:19:06] Starting ATLAS job with PandaID=6839385219
[2025-10-12 05:19:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:13:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:13:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 06:13:39]  replicas=None
[2025-10-12 06:13:39]  scope=mc23_13p6TeV
[2025-10-12 06:13:39]  status=None
[2025-10-12 06:13:39]  status_code=0
[2025-10-12 06:13:39]  storage_token=
[2025-10-12 06:13:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839385219/log.46676269._070463.job.log.tgz.1
[2025-10-12 06:13:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/af/log.46676269._070463.job.log.tgz.1
[2025-10-12 06:13:39]  workdir=None
[2025-10-12 06:13:39] ]
[2025-10-12 06:13:39] 2025-10-12 10:13:02,943 | INFO     | transferring file log.46676269._070463.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839385219/log.46676269._070463.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 06:13:39] 2025-10-12 10:13:02,943 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839385219/log.46676269._070463.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._070463.job
[2025-10-12 06:13:39] 2025-10-12 10:13:02,964 | INFO     | adding to output.list: log.46676269._070463.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/af/log.46676269._070463.job.log.tg
[2025-10-12 06:13:39] 2025-10-12 10:13:02,964 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 06:13:39] 2025-10-12 10:13:02,965 | INFO     | summary of transferred files:
[2025-10-12 06:13:39] 2025-10-12 10:13:02,965 | INFO     |  -- lfn=log.46676269._070463.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:13:39] 2025-10-12 10:13:02,965 | INFO     | stage-out finished correctly
[2025-10-12 06:13:39] 2025-10-12 10:13:03,744 | INFO     | time since job start (3229s) is within the limit (172800.0s)
[2025-10-12 06:13:39] 2025-10-12 10:13:03,781 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:13:39] 2025-10-12 10:13:03,886 | INFO     | monitor loop #246: job 0:6839385219 is in state 'finished'
[2025-10-12 06:13:39] 2025-10-12 10:13:03,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:13:39] 2025-10-12 10:13:04,477 | INFO     | job 6839385219 has state=finished
[2025-10-12 06:13:39] 2025-10-12 10:13:04,478 | INFO     | preparing for final server update for job 6839385219 in state='finished'
[2025-10-12 06:13:39] 2025-10-12 10:13:04,478 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:13:39] 2025-10-12 10:13:04,479 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:13:39] 2025-10-12 10:13:04,479 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:13:39] 2025-10-12 10:13:04,479 | INFO     | job 6839385219 has finished - writing final server update
[2025-10-12 06:13:39] 2025-10-12 10:13:04,479 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:13:39] 2025-10-12 10:13:04,480 | INFO     | executing command: lscpu
[2025-10-12 06:13:39] 2025-10-12 10:13:04,512 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:13:39] 2025-10-12 10:13:05,750 | INFO     | time since job start (3231s) is within the limit (172800.0s)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,389 | INFO     | monitor loop #247: job 0:6839385219 is in state 'finished'
[2025-10-12 06:13:39] 2025-10-12 10:13:06,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,881 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 06:13:39] 2025-10-12 10:13:06,883 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2786.4988125000004
[2025-10-12 06:13:39] 2025-10-12 10:13:06,885 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839385219/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,885 | INFO     | extracted standard info from prmon json
[2025-10-12 06:13:39] 2025-10-12 10:13:06,885 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:13:39] 2025-10-12 10:13:06,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:13:39] 2025-10-12 10:13:06,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:13:39] 2025-10-12 10:13:06,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | sum of square deviations: 30168007.5
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | sum of deviations: -1635248533.0
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | mean x: 1760262451.5
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | mean y: 2731834.347826087
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | -- intersect: 95417272934.23181
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | intersect: 95417272934.23181
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | chi2: 0.04027839821864037
[2025-10-12 06:13:39] 2025-10-12 10:13:06,887 | INFO     | -- intersect: 95417272934.23181
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | current memory leak: -54.20 B/s (using 46 data points, chi2=0.04)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | could have reported an average CPU frequency of 2989 MHz (5 samples)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | ..............................
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . Timing measurements:
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . get job = 0 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . initial setup = 2 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . payload setup = 3 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . stage-in = 0 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . payload execution = 3207 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . stage-out = 0 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | . log creation = 0 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,888 | INFO     | ..............................
[2025-10-12 06:13:39] 2025-10-12 10:13:06,955 | INFO     | 
[2025-10-12 06:13:39] 2025-10-12 10:13:06,955 | INFO     | job summary report
[2025-10-12 06:13:39] 2025-10-12 10:13:06,955 | INFO     | --------------------------------------------------
[2025-10-12 06:13:39] 2025-10-12 10:13:06,955 | INFO     | PanDA job id: 6839385219
[2025-10-12 06:13:39] 2025-10-12 10:13:06,955 | INFO     | task id: 46676269
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | errors: (none)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | pilot state: finished 
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | transexitcode: 0
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | exeerrorcode: 0
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | exeerrordiag: 
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | exitcode: 0
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | exitmsg: OK
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | cpuconsumptiontime: 23394 s
[2025-10-12 06:13:39] 2025-10-12 10:13:06,956 | INFO     | nevents: 400
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | neventsw: 0
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | pid: 15897
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | pgrp: 15897
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | corecount: 8
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | event service: False
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | sizes: {0: 2348630, 1: 2348885, 3: 2349147, 12: 2349175, 3214: 2374749, 3215: 2383931, 3218: 2384101}
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | --------------------------------------------------
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | 
[2025-10-12 06:13:39] 2025-10-12 10:13:06,957 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 06:13:39] 2025-10-12 10:13:06,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:13:39] 2025-10-12 10:13:06,981 | INFO     | job 6839385219 has completed (purged errors)
[2025-10-12 06:13:39] 2025-10-12 10:13:06,981 | INFO     | overall cleanup function is called
[2025-10-12 06:13:39] 2025-10-12 10:13:07,988 | INFO     | --- collectZombieJob: --- 10, [15897]
[2025-10-12 06:13:39] 2025-10-12 10:13:07,989 | INFO     | zombie collector waiting for pid 15897
[2025-10-12 06:13:39] 2025-10-12 10:13:07,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:13:39] 2025-10-12 10:13:07,989 | INFO     | collected zombie processes
[2025-10-12 06:13:39] 2025-10-12 10:13:07,989 | INFO     | will attempt to kill all subprocesses of pid=15897
[2025-10-12 06:13:39] 2025-10-12 10:13:08,082 | INFO     | process IDs to be killed: [15897] (in reverse order)
[2025-10-12 06:13:39] 2025-10-12 10:13:08,132 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:13:39] 2025-10-12 10:13:08,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:13:39] 2025-10-12 10:13:08,135 | INFO     | did not find any defunct processes belonging to 15897
[2025-10-12 06:13:39] 2025-10-12 10:13:08,137 | INFO     | did not find any defunct processes belonging to 15897
[2025-10-12 06:13:39] 2025-10-12 10:13:08,138 | INFO     | ready for new job
[2025-10-12 06:13:39] 2025-10-12 10:13:08,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:13:39] 2025-10-12 10:13:08,140 | INFO     | ***************************************
[2025-10-12 06:13:39] 2025-10-12 10:13:08,140 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:13:39] 2025-10-12 10:13:08,140 | INFO     | ***************************************
[2025-10-12 06:13:39] 2025-10-12 10:13:08,140 | INFO     | 
[2025-10-12 06:13:39] 2025-10-12 10:13:08,141 | INFO     | architecture information:
[2025-10-12 06:13:39] 2025-10-12 10:13:08,141 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:13:39] 2025-10-12 10:13:08,155 | INFO     | cat /etc/os-release:
[2025-10-12 06:13:39] NAME="CentOS Linux"
[2025-10-12 06:13:39] VERSION="7 (Core)"
[2025-10-12 06:13:39] ID="centos"
[2025-10-12 06:13:39] ID_LIKE="rhel fedora"
[2025-10-12 06:13:39] VERSION_ID="7"
[2025-10-12 06:13:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:13:39] ANSI_COLOR="0;31"
[2025-10-12 06:13:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:13:39] HOME_URL="https://www.centos.org/"
[2025-10-12 06:13:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:13:39] 
[2025-10-12 06:13:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:13:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:13:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:13:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:13:39] 
[2025-10-12 06:13:39] 2025-10-12 10:13:08,156 | INFO     | ***************************************
[2025-10-12 06:13:39] 2025-10-12 10:13:08,658 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 06:13:39] 2025-10-12 10:13:08,677 | INFO     | sufficient remaining disk space (32410435584 B)
[2025-10-12 06:13:39] 2025-10-12 10:13:08,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:13:39] 2025-10-12 10:13:08,678 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:13:39] 2025-10-12 10:13:08,678 | INFO     | update_server=False
[2025-10-12 06:13:39] 2025-10-12 10:13:08,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:13:39] 2025-10-12 10:13:08,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:13:39] 2025-10-12 10:13:08,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:13:39] 2025-10-12 10:13:08,892 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 06:13:39] 2025-10-12 10:13:08,893 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 06:13:39] 2025-10-12 10:13:08,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:13:39] 2025-10-12 10:13:08,893 | INFO     | will abort loop
[2025-10-12 06:13:39] 2025-10-12 10:13:09,679 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:09,683 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:09,767 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:09,768 | INFO     | all data control threads have been joined
[2025-10-12 06:13:39] 2025-10-12 10:13:09,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:13:39] 2025-10-12 10:13:09,898 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:09,903 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:09,903 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:10,076 | INFO     | all payload control threads have been joined
[2025-10-12 06:13:39] 2025-10-12 10:13:10,179 | INFO     | all job control threads have been joined
[2025-10-12 06:13:39] 2025-10-12 10:13:10,525 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:10,685 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:10,772 | INFO     | [data] control thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:11,028 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:11,080 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:11,080 | INFO     | [payload] control thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:11,080 | INFO     | [job] validate thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:11,184 | INFO     | [job] control thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:13,879 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:19,375 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:13:39] 2025-10-12 10:13:19,475 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:13:39] 2025-10-12 10:13:20,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:13:39] 2025-10-12 10:13:20,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801381541696)>', '<ExcThread(monitor, started 139801093195520)>']
[2025-10-12 06:13:39] 2025-10-12 10:13:25,649 | INFO     | all workflow threads have been joined
[2025-10-12 06:13:39] 2025-10-12 10:13:25,649 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:13:39] 2025-10-12 10:13:25,650 | INFO     | traces error code: 0
[2025-10-12 06:13:39] 2025-10-12 10:13:25,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:13:39] 2025-10-12 10:13:38,933 | INFO     | PID=9541 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 06:13:39] 2025-10-12 10:13:38,934 | INFO     | .. there are 2 such processes running
[2025-10-12 06:13:39] 2025-10-12 10:13:38,934 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:13:39] 2025-10-12 10:13:38,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:13:39] 2025-10-12 10:13:38,934 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:13:39] 2025-10-12 10:13:38,934 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:13:39] 2025-10-12 10:13:38,934 | INFO     | [monitor] control thread has ended
[2025-10-12 06:13:39] 2025-10-12 10:13:38,996 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:13:39] 2025-10-12 10:13:39,000 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:13:39] 2025-10-12 10:13:39,003 [wrapper] pilotpid: 9541
[2025-10-12 06:13:39] 2025-10-12 10:13:39,007 [wrapper] Pilot exit status: 0
[2025-10-12 06:13:39] 2025-10-12 10:13:39,018 [wrapper] pandaids: 6839385219
[2025-10-12 06:13:39] 2025-10-12 10:13:39,051 [wrapper] cleanup supervisor_pilot  4240 9542
[2025-10-12 06:13:39] 2025-10-12 10:13:39,054 [wrapper] Test setup, not cleaning
[2025-10-12 06:13:39] 2025-10-12 10:13:39,057 [wrapper] apfmon messages muted
[2025-10-12 06:13:39] 2025-10-12 10:13:39,059 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:13:39] 2025-10-12 10:13:39,062 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:13:39]  *** Error codes and diagnostics ***
[2025-10-12 06:13:39]     "exeErrorCode": 0,
[2025-10-12 06:13:39]     "exeErrorDiag": "",
[2025-10-12 06:13:39]     "pilotErrorCode": 0,
[2025-10-12 06:13:39]     "pilotErrorDiag": "",
[2025-10-12 06:13:39]  *** Listing of results directory ***
[2025-10-12 06:13:39] total 412032
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:04 pilot3.tar.gz
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:06 queuedata.json
[2025-10-12 06:13:39] -rwx------ 1 boincer umatlas     36292 Oct 12 00:07 runpilot2-wrapper.sh
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas       100 Oct 12 05:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:13:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 05:19 run_atlas
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas       105 Oct 12 05:19 job.xml
[2025-10-12 06:13:39] -rw-r--r-- 2 boincer umatlas 224495475 Oct 12 05:19 EVNT.46676267._003231.pool.root.1
[2025-10-12 06:13:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 05:19 start_atlas.sh
[2025-10-12 06:13:39] drwxrwx--x 2 boincer umatlas      4096 Oct 12 05:19 shared
[2025-10-12 06:13:39] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 05:19 input.tar.gz
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas         0 Oct 12 05:19 boinc_lockfile
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 05:19 pandaJob.out
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas    975536 Oct 12 05:19 agis_schedconf.cvmfs.json
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas   1560580 Oct 12 05:19 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:13:39] drwx------ 5 boincer umatlas      4096 Oct 12 05:19 pilot3
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas      6136 Oct 12 06:12 init_data.xml
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas 191907327 Oct 12 06:12 HITS.46676269._070463.pool.root.1
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas        95 Oct 12 06:12 pilot_heartbeat.json
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas       529 Oct 12 06:12 boinc_task_state.xml
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas      1046 Oct 12 06:12 memory_monitor_summary.json
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas    307776 Oct 12 06:13 log.46676269._070463.job.log.tgz.1
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas      7833 Oct 12 06:13 heartbeat.json
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas        27 Oct 12 06:13 wrapper_checkpoint.txt
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 06:13 boinc_mmap_file
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas       819 Oct 12 06:13 pilotlog.txt
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas    498443 Oct 12 06:13 log.46676269._070463.job.log.1
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas       357 Oct 12 06:13 output.list
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas       620 Oct 12 06:13 runtime_log
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas    829440 Oct 12 06:13 result.tar.gz
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 06:13 runtime_log.err
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas       656 Oct 12 06:13 DS4NDmHY2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmXiNDmDyRhVn.diag
[2025-10-12 06:13:39] -rw-r--r-- 1 boincer umatlas     21784 Oct 12 06:13 stderr.txt
[2025-10-12 06:13:39] HITS file was successfully produced:
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas 191907327 Oct 12 06:12 shared/HITS.pool.root.1
[2025-10-12 06:13:39]  *** Contents of shared directory: ***
[2025-10-12 06:13:39] total 408040
[2025-10-12 06:13:39] -rw-r--r-- 2 boincer umatlas 224495475 Oct 12 05:19 ATLAS.root_0
[2025-10-12 06:13:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 05:19 start_atlas.sh
[2025-10-12 06:13:39] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 05:19 input.tar.gz
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas 191907327 Oct 12 06:12 HITS.pool.root.1
[2025-10-12 06:13:39] -rw------- 1 boincer umatlas    829440 Oct 12 06:13 result.tar.gz
06:13:41 (5870): run_atlas exited; CPU time 23346.863898
06:13:41 (5870): called boinc_finish(0)

</stderr_txt>
]]>

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