Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:21:36 (4066802): wrapper (7.7.26015): starting
05:21:36 (4066802): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 05:21:36] Arguments: --nthreads 8
[2025-10-12 05:21:36] Threads: 8
[2025-10-12 05:21:36] Checking for CVMFS
[2025-10-12 05:21:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:21:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:21:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:21:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:21:36] 2.13.2.0 21981 52695 132956 151615 1 272 36722370 40960001 7108 16776704 0 44797374 99.733 32011952 34423 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:21:36] CVMFS is ok
[2025-10-12 05:21:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:21:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:21:36] Further information can be found at the LHC@home message board.
[2025-10-12 05:21:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:21:36] Checking for apptainer binary...
[2025-10-12 05:21:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:21:36] Running /usr/bin/apptainer --version
[2025-10-12 05:21:36] apptainer version 1.4.3-1.el9
[2025-10-12 05:21:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:21:37] c-211-7.aglt2.org
[2025-10-12 05:21:37] apptainer works
[2025-10-12 05:21:37] Set ATHENA_PROC_NUMBER=8
[2025-10-12 05:21:37] Set ATHENA_CORE_NUMBER=8
[2025-10-12 05:21:37] Starting ATLAS job with PandaID=6839385154
[2025-10-12 05:21:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:18:49]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:18:49] 2025-10-12 17:17:41,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:18:49] 2025-10-12 17:17:41,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:18:49] 2025-10-12 17:17:41,566 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:18:49] 2025-10-12 17:17:41,567 | INFO     | sum of square deviations: 31786707917.922913
[2025-10-12 13:18:49] 2025-10-12 17:17:41,573 | INFO     | sum of deviations: 10665048855.153805
[2025-10-12 13:18:49] 2025-10-12 17:17:41,574 | INFO     | mean x: 1760275184.3461537
[2025-10-12 13:18:49] 2025-10-12 17:17:41,575 | INFO     | mean y: 2508410.863247863
[2025-10-12 13:18:49] 2025-10-12 17:17:41,575 | INFO     | -- intersect: -588097602.4440069
[2025-10-12 13:18:49] 2025-10-12 17:17:41,581 | INFO     | intersect: -588097602.4440069
[2025-10-12 13:18:49] 2025-10-12 17:17:41,582 | INFO     | chi2: 2.1918253402405368
[2025-10-12 13:18:49] 2025-10-12 17:17:41,583 | INFO     | sum of square deviations: 30778940029.304558
[2025-10-12 13:18:49] 2025-10-12 17:17:41,592 | INFO     | sum of deviations: 39491848210.97405
[2025-10-12 13:18:49] 2025-10-12 17:17:41,593 | INFO     | mean x: 1760275031.8552916
[2025-10-12 13:18:49] 2025-10-12 17:17:41,593 | INFO     | mean y: 2512733.969762419
[2025-10-12 13:18:49] 2025-10-12 17:17:41,594 | INFO     | -- intersect: -2256061287.793501
[2025-10-12 13:18:49] 2025-10-12 17:17:41,594 | INFO     | intersect: -2256061287.793501
[2025-10-12 13:18:49] 2025-10-12 17:17:41,595 | INFO     | chi2: 1.5072671410962502
[2025-10-12 13:18:49] 2025-10-12 17:17:41,595 | INFO     | current chi2=1.5072671410962502 (change=31.232333460893436 %)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,596 | INFO     | sum of square deviations: 29792566092.698757
[2025-10-12 13:18:49] 2025-10-12 17:17:41,607 | INFO     | sum of deviations: 38139065898.4192
[2025-10-12 13:18:49] 2025-10-12 17:17:41,608 | INFO     | mean x: 1760274879.3537118
[2025-10-12 13:18:49] 2025-10-12 17:17:41,608 | INFO     | mean y: 2512524.812227074
[2025-10-12 13:18:49] 2025-10-12 17:17:41,609 | INFO     | -- intersect: -2250910003.9526215
[2025-10-12 13:18:49] 2025-10-12 17:17:41,609 | INFO     | intersect: -2250910003.9526215
[2025-10-12 13:18:49] 2025-10-12 17:17:41,610 | INFO     | chi2: 1.507233956908662
[2025-10-12 13:18:49] 2025-10-12 17:17:41,610 | INFO     | current chi2=1.507233956908662 (change=0.0022016128849002155 %)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,610 | INFO     | right removable region: 457
[2025-10-12 13:18:49] 2025-10-12 17:17:41,611 | INFO     | sum of square deviations: 30778698469.30452
[2025-10-12 13:18:49] 2025-10-12 17:17:41,618 | INFO     | sum of deviations: -60253589333.73219
[2025-10-12 13:18:49] 2025-10-12 17:17:41,619 | INFO     | mean x: 1760275336.8552916
[2025-10-12 13:18:49] 2025-10-12 17:17:41,619 | INFO     | mean y: 2519090.645788337
[2025-10-12 13:18:49] 2025-10-12 17:17:41,619 | INFO     | -- intersect: 3448503246.4395094
[2025-10-12 13:18:49] 2025-10-12 17:17:41,619 | INFO     | intersect: 3448503246.4395094
[2025-10-12 13:18:49] 2025-10-12 17:17:41,619 | INFO     | chi2: 0.8350582891300091
[2025-10-12 13:18:49] 2025-10-12 17:17:41,620 | INFO     | current chi2=0.8350582891300091 (change=61.90123940083805 %)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,620 | INFO     | sum of square deviations: 29792224308.106895
[2025-10-12 13:18:49] 2025-10-12 17:17:41,624 | INFO     | sum of deviations: -64882712113.56547
[2025-10-12 13:18:49] 2025-10-12 17:17:41,624 | INFO     | mean x: 1760275489.3646288
[2025-10-12 13:18:49] 2025-10-12 17:17:41,625 | INFO     | mean y: 2519798.6441048034
[2025-10-12 13:18:49] 2025-10-12 17:17:41,625 | INFO     | -- intersect: 3836119016.878112
[2025-10-12 13:18:49] 2025-10-12 17:17:41,625 | INFO     | intersect: 3836119016.878112
[2025-10-12 13:18:49] 2025-10-12 17:17:41,625 | INFO     | chi2: 0.8156331649480111
[2025-10-12 13:18:49] 2025-10-12 17:17:41,626 | INFO     | current chi2=0.8156331649480111 (change=2.3261997916619412 %)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,626 | INFO     | left removable region: 20
[2025-10-12 13:18:49] 2025-10-12 17:17:41,626 | INFO     | sum of square deviations: 25879427699.505817
[2025-10-12 13:18:49] 2025-10-12 17:17:41,629 | INFO     | sum of deviations: -18740034092.871807
[2025-10-12 13:18:49] 2025-10-12 17:17:41,630 | INFO     | mean x: 1760275458.8878717
[2025-10-12 13:18:49] 2025-10-12 17:17:41,630 | INFO     | mean y: 2521258.2883295193
[2025-10-12 13:18:49] 2025-10-12 17:17:41,630 | INFO     | -- intersect: 1277187085.3473337
[2025-10-12 13:18:49] 2025-10-12 17:17:41,630 | INFO     | intersect: 1277187085.3473337
[2025-10-12 13:18:49] 2025-10-12 17:17:41,630 | INFO     | chi2: 0.10158621902853116
[2025-10-12 13:18:49] 2025-10-12 17:17:41,631 | INFO     | -- intersect: 1277187085.3473337
[2025-10-12 13:18:49] 2025-10-12 17:17:41,631 | INFO     | current memory leak: -0.72 B/s (using 437 data points, chi2=0.10)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,632 | INFO     | could have reported an average CPU frequency of 2502 MHz (19 samples)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,632 | INFO     | ..............................
[2025-10-12 13:18:49] 2025-10-12 17:17:41,632 | INFO     | . Timing measurements:
[2025-10-12 13:18:49] 2025-10-12 17:17:41,632 | INFO     | . get job = 0 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,632 | INFO     | . initial setup = 2 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,632 | INFO     | . payload setup = 6 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,633 | INFO     | . stage-in = 0 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,633 | INFO     | . payload execution = 28505 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,633 | INFO     | . stage-out = 5 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,633 | INFO     | . log creation = 1 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,633 | INFO     | ..............................
[2025-10-12 13:18:49] 2025-10-12 17:17:41,753 | INFO     | 
[2025-10-12 13:18:49] 2025-10-12 17:17:41,753 | INFO     | job summary report
[2025-10-12 13:18:49] 2025-10-12 17:17:41,753 | INFO     | --------------------------------------------------
[2025-10-12 13:18:49] 2025-10-12 17:17:41,753 | INFO     | PanDA job id: 6839385154
[2025-10-12 13:18:49] 2025-10-12 17:17:41,753 | INFO     | task id: 46676269
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | errors: (none)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | pilot state: finished 
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | transexitcode: 0
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | exeerrorcode: 0
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | exeerrordiag: 
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | exitcode: 0
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | exitmsg: OK
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | cpuconsumptiontime: 63110 s
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | nevents: 400
[2025-10-12 13:18:49] 2025-10-12 17:17:41,754 | INFO     | neventsw: 0
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | pid: 4077820
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | pgrp: 4077820
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | corecount: 8
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | event service: False
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 28513: 2386226, 28519: 2395280, 28534: 2395418}
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | --------------------------------------------------
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | 
[2025-10-12 13:18:49] 2025-10-12 17:17:41,755 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 13:18:49] 2025-10-12 17:17:41,781 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,782 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,782 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,782 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,782 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,782 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,782 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:18:49] 2025-10-12 17:17:41,784 | INFO     | job 6839385154 has completed (purged errors)
[2025-10-12 13:18:49] 2025-10-12 17:17:41,784 | INFO     | overall cleanup function is called
[2025-10-12 13:18:49] 2025-10-12 17:17:42,797 | INFO     | --- collectZombieJob: --- 10, [4077820]
[2025-10-12 13:18:49] 2025-10-12 17:17:42,797 | INFO     | zombie collector waiting for pid 4077820
[2025-10-12 13:18:49] 2025-10-12 17:17:42,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:18:49] 2025-10-12 17:17:42,798 | INFO     | collected zombie processes
[2025-10-12 13:18:49] 2025-10-12 17:17:42,798 | INFO     | will attempt to kill all subprocesses of pid=4077820
[2025-10-12 13:18:49] 2025-10-12 17:17:43,708 | INFO     | process IDs to be killed: [4077820] (in reverse order)
[2025-10-12 13:18:49] 2025-10-12 17:17:43,916 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:18:49] 2025-10-12 17:17:43,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:18:49] 2025-10-12 17:17:43,935 | INFO     | did not find any defunct processes belonging to 4077820
[2025-10-12 13:18:49] 2025-10-12 17:17:43,955 | INFO     | did not find any defunct processes belonging to 4077820
[2025-10-12 13:18:49] 2025-10-12 17:17:43,956 | INFO     | ready for new job
[2025-10-12 13:18:49] 2025-10-12 17:17:43,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:18:49] 2025-10-12 17:17:43,964 | INFO     | ***************************************
[2025-10-12 13:18:49] 2025-10-12 17:17:43,968 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:18:49] 2025-10-12 17:17:43,968 | INFO     | ***************************************
[2025-10-12 13:18:49] 2025-10-12 17:17:43,969 | INFO     | 
[2025-10-12 13:18:49] 2025-10-12 17:17:43,976 | INFO     | architecture information:
[2025-10-12 13:18:49] 2025-10-12 17:17:43,977 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:18:49] 2025-10-12 17:17:44,050 | INFO     | cat /etc/os-release:
[2025-10-12 13:18:49] NAME="CentOS Linux"
[2025-10-12 13:18:49] VERSION="7 (Core)"
[2025-10-12 13:18:49] ID="centos"
[2025-10-12 13:18:49] ID_LIKE="rhel fedora"
[2025-10-12 13:18:49] VERSION_ID="7"
[2025-10-12 13:18:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:18:49] ANSI_COLOR="0;31"
[2025-10-12 13:18:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:18:49] HOME_URL="https://www.centos.org/"
[2025-10-12 13:18:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:18:49] 
[2025-10-12 13:18:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:18:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:18:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:18:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:18:49] 
[2025-10-12 13:18:49] 2025-10-12 17:17:44,050 | INFO     | ***************************************
[2025-10-12 13:18:49] 2025-10-12 17:17:44,553 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 13:18:49] 2025-10-12 17:17:44,591 | INFO     | sufficient remaining disk space (63095963648 B)
[2025-10-12 13:18:49] 2025-10-12 17:17:44,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:18:49] 2025-10-12 17:17:44,592 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:18:49] 2025-10-12 17:17:44,592 | INFO     | update_server=False
[2025-10-12 13:18:49] 2025-10-12 17:17:44,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:18:49] 2025-10-12 17:17:44,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:18:49] 2025-10-12 17:17:44,597 | INFO     | aborting loop
[2025-10-12 13:18:49] 2025-10-12 17:17:44,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:18:49] 2025-10-12 17:17:45,103 | INFO     | all job control threads have been joined
[2025-10-12 13:18:49] 2025-10-12 17:17:45,137 | INFO     | all data control threads have been joined
[2025-10-12 13:18:49] 2025-10-12 17:17:45,598 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:45,602 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:45,688 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:45,919 | INFO     | all payload control threads have been joined
[2025-10-12 13:18:49] 2025-10-12 17:17:45,957 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,025 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,109 | INFO     | [job] control thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,143 | INFO     | [data] control thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,150 | INFO     | [job] validate thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:18:49] 2025-10-12 17:17:46,486 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,583 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,605 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:46,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:18:49] 2025-10-12 17:17:46,925 | INFO     | [payload] control thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:47,091 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:47,774 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:50,198 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:17:54,898 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:18:49] 2025-10-12 17:17:55,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:18:49] 2025-10-12 17:18:13,592 | INFO     | PID=4070890 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:18:49] 2025-10-12 17:18:13,615 | INFO     | .. there are 8 such processes running
[2025-10-12 13:18:49] 2025-10-12 17:18:13,615 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:18:49] 2025-10-12 17:18:13,615 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:18:49] 2025-10-12 17:18:13,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:18:49] 2025-10-12 17:18:43,040 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:18:49] 2025-10-12 17:18:43,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140599555090240)>', '<ExcThread(monitor, started 140598698829568)>']
[2025-10-12 13:18:49] 2025-10-12 17:18:43,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:18:49] 2025-10-12 17:18:43,809 | INFO     | [monitor] control thread has ended
[2025-10-12 13:18:49] 2025-10-12 17:18:48,355 | INFO     | all workflow threads have been joined
[2025-10-12 13:18:49] 2025-10-12 17:18:48,355 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:18:49] 2025-10-12 17:18:48,356 | INFO     | traces error code: 0
[2025-10-12 13:18:49] 2025-10-12 17:18:48,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:18:49] 2025-10-12 17:18:48,933 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:18:49] 2025-10-12 17:18:48,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:18:49] 2025-10-12 17:18:48,945 [wrapper] pilotpid: 4070890
[2025-10-12 13:18:49] 2025-10-12 17:18:48,949 [wrapper] Pilot exit status: 0
[2025-10-12 13:18:49] 2025-10-12 17:18:49,016 [wrapper] pandaids: 6839385154
[2025-10-12 13:18:49] 2025-10-12 17:18:49,079 [wrapper] cleanup supervisor_pilot  585315 4070891
[2025-10-12 13:18:49] 2025-10-12 17:18:49,083 [wrapper] Test setup, not cleaning
[2025-10-12 13:18:49] 2025-10-12 17:18:49,087 [wrapper] apfmon messages muted
[2025-10-12 13:18:49] 2025-10-12 17:18:49,090 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:18:49] 2025-10-12 17:18:49,094 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:18:49]  *** Error codes and diagnostics ***
[2025-10-12 13:18:49]     "exeErrorCode": 0,
[2025-10-12 13:18:49]     "exeErrorDiag": "",
[2025-10-12 13:18:49]     "pilotErrorCode": 0,
[2025-10-12 13:18:49]     "pilotErrorDiag": "",
[2025-10-12 13:18:49]  *** Listing of results directory ***
[2025-10-12 13:18:49] total 418980
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 23:35 pilot3.tar.gz
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 00:03 queuedata.json
[2025-10-12 13:18:49] -rwx------. 1 boincer umatlas     36292 Oct 12 00:03 runpilot2-wrapper.sh
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas       100 Oct 12 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:18:49] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 05:21 run_atlas
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas       105 Oct 12 05:21 job.xml
[2025-10-12 13:18:49] -rw-r--r--. 2 boincer umatlas 221715479 Oct 12 05:21 EVNT.46676267._003228.pool.root.1
[2025-10-12 13:18:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:21 start_atlas.sh
[2025-10-12 13:18:49] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 05:21 shared
[2025-10-12 13:18:49] -rw-r--r--. 2 boincer umatlas    569684 Oct 12 05:21 input.tar.gz
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas         0 Oct 12 05:21 boinc_lockfile
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 05:21 pandaJob.out
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas    975536 Oct 12 05:21 agis_schedconf.cvmfs.json
[2025-10-12 13:18:49] drwx------. 5 boincer umatlas      4096 Oct 12 05:21 pilot3
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas       531 Oct 12 13:16 boinc_task_state.xml
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas 194975111 Oct 12 13:16 HITS.46676269._070398.pool.root.1
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas      1052 Oct 12 13:17 memory_monitor_summary.json
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas   1560580 Oct 12 13:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas    646379 Oct 12 13:17 log.46676269._070398.job.log.tgz.1
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas        95 Oct 12 13:17 pilot_heartbeat.json
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas      7843 Oct 12 13:17 heartbeat.json
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas      6614 Oct 12 13:18 init_data.xml
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:18 boinc_mmap_file
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas        28 Oct 12 13:18 wrapper_checkpoint.txt
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas      4895 Oct 12 13:18 pilotlog.txt
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas   3577654 Oct 12 13:18 log.46676269._070398.job.log.1
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas       357 Oct 12 13:18 output.list
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:18 runtime_log
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas   4239360 Oct 12 13:18 result.tar.gz
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas       661 Oct 12 13:18 t0BODmSU2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPViNDmQLjVVo.diag
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas      8699 Oct 12 13:18 runtime_log.err
[2025-10-12 13:18:49] -rw-r--r--. 1 boincer umatlas     20955 Oct 12 13:18 stderr.txt
[2025-10-12 13:18:49] HITS file was successfully produced:
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas 194975111 Oct 12 13:16 shared/HITS.pool.root.1
[2025-10-12 13:18:49]  *** Contents of shared directory: ***
[2025-10-12 13:18:49] total 411648
[2025-10-12 13:18:49] -rw-r--r--. 2 boincer umatlas 221715479 Oct 12 05:21 ATLAS.root_0
[2025-10-12 13:18:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:21 start_atlas.sh
[2025-10-12 13:18:49] -rw-r--r--. 2 boincer umatlas    569684 Oct 12 05:21 input.tar.gz
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas 194975111 Oct 12 13:16 HITS.pool.root.1
[2025-10-12 13:18:49] -rw-------. 1 boincer umatlas   4239360 Oct 12 13:18 result.tar.gz
13:18:51 (4066802): run_atlas exited; CPU time 63930.294717
13:18:51 (4066802): called boinc_finish(0)

</stderr_txt>
]]>

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