Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:28:36 (3589038): wrapper (7.7.26015): starting
05:28:36 (3589038): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 05:28:36] Arguments: --nthreads 8
[2025-10-12 05:28:36] Threads: 8
[2025-10-12 05:28:36] Checking for CVMFS
[2025-10-12 05:28:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:28:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:28:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:28:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:28:37] 2.13.2.0 3269412 35547 385080 151615 2 474 32306577 40960001 55589 16776704 0 455164397 99.845 184443939 36802 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 05:28:37] CVMFS is ok
[2025-10-12 05:28:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:28:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:28:37] Further information can be found at the LHC@home message board.
[2025-10-12 05:28:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:28:37] Checking for apptainer binary...
[2025-10-12 05:28:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:28:37] Running /usr/bin/apptainer --version
[2025-10-12 05:28:37] apptainer version 1.4.3-1.el9
[2025-10-12 05:28:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:28:37] c8-16-2.aglt2.org
[2025-10-12 05:28:37] apptainer works
[2025-10-12 05:28:37] Set ATHENA_PROC_NUMBER=8
[2025-10-12 05:28:37] Set ATHENA_CORE_NUMBER=8
[2025-10-12 05:28:37] Starting ATLAS job with PandaID=6838989009
[2025-10-12 05:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:33:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:33:29] 2025-10-12 10:32:33,250 | INFO     | preparing for final server update for job 6838989009 in state='finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:33,251 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:33:29] 2025-10-12 10:32:33,251 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:33:29] 2025-10-12 10:32:33,251 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:33:29] 2025-10-12 10:32:33,251 | INFO     | job 6838989009 has finished - writing final server update
[2025-10-12 06:33:29] 2025-10-12 10:32:33,251 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:33:29] 2025-10-12 10:32:33,251 | INFO     | executing command: lscpu
[2025-10-12 06:33:29] 2025-10-12 10:32:33,369 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:33:29] 2025-10-12 10:32:34,030 | INFO     | time since job start (3812s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:35,077 | INFO     | monitor loop #247: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:35,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:36,037 | INFO     | time since job start (3814s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:37,582 | INFO     | monitor loop #248: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:37,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:38,068 | INFO     | time since job start (3816s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:40,075 | INFO     | time since job start (3818s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:40,087 | INFO     | monitor loop #249: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:40,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:42,113 | INFO     | time since job start (3820s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:42,594 | INFO     | monitor loop #250: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:42,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:44,120 | INFO     | time since job start (3822s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:45,115 | INFO     | monitor loop #251: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:45,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:46,127 | INFO     | time since job start (3824s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:47,627 | INFO     | monitor loop #252: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:47,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:48,841 | INFO     | PID=3593236 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:33:29] 2025-10-12 10:32:48,841 | INFO     | .. there are 88 such processes running
[2025-10-12 06:33:29] 2025-10-12 10:32:49,842 | INFO     | time since job start (3827s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:50,137 | INFO     | monitor loop #253: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:50,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:51,851 | INFO     | time since job start (3829s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:52,645 | INFO     | monitor loop #254: job 0:6838989009 is in state 'finished'
[2025-10-12 06:33:29] 2025-10-12 10:32:52,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:33:29] 2025-10-12 10:32:53,834 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 06:33:29] 2025-10-12 10:32:53,843 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.6931562499967
[2025-10-12 06:33:29] 2025-10-12 10:32:53,860 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838989009/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:33:29] 2025-10-12 10:32:53,861 | INFO     | extracted standard info from prmon json
[2025-10-12 06:33:29] 2025-10-12 10:32:53,861 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:33:29] 2025-10-12 10:32:53,861 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:33:29] 2025-10-12 10:32:53,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:33:29] 2025-10-12 10:32:53,861 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:33:29] 2025-10-12 10:32:53,862 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:33:29] 2025-10-12 10:32:53,862 | INFO     | sum of square deviations: 51573060.0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | sum of deviations: -1585819745.0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | mean x: 1760263362.0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | mean y: 2204400.4545454546
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | -- intersect: 54128533066.228546
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | intersect: 54128533066.228546
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | chi2: 0.022444779250854533
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | -- intersect: 54128533066.228546
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | current memory leak: -30.75 B/s (using 55 data points, chi2=0.02)
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | could have reported an average CPU frequency of 3797 MHz (6 samples)
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | ..............................
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . Timing measurements:
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . get job = 0 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . initial setup = 3 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . payload setup = 16 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . stage-in = 0 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . payload execution = 3747 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,863 | INFO     | . stage-out = 1 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,864 | INFO     | . log creation = 0 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,864 | INFO     | ..............................
[2025-10-12 06:33:29] 2025-10-12 10:32:53,876 | INFO     | time since job start (3831s) is within the limit (172800.0s)
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | 
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | job summary report
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | --------------------------------------------------
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | PanDA job id: 6838989009
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | task id: 46676269
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | errors: (none)
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | pilot state: finished 
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | transexitcode: 0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | exeerrorcode: 0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | exeerrordiag: 
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | exitcode: 0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | exitmsg: OK
[2025-10-12 06:33:29] 2025-10-12 10:32:53,968 | INFO     | cpuconsumptiontime: 22266 s
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | nevents: 400
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | neventsw: 0
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | pid: 3616027
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | pgrp: 3616027
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | corecount: 8
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | event service: False
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | sizes: {0: 2348635, 1: 2348834, 11: 2348834, 12: 2349124, 22: 2349152, 3768: 2375038, 3771: 2384036, 3774: 2384092, 3796: 2384286}
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | --------------------------------------------------
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | 
[2025-10-12 06:33:29] 2025-10-12 10:32:53,969 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 06:33:29] 2025-10-12 10:32:54,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | job 6838989009 has completed (purged errors)
[2025-10-12 06:33:29] 2025-10-12 10:32:54,004 | INFO     | overall cleanup function is called
[2025-10-12 06:33:29] 2025-10-12 10:32:55,019 | INFO     | --- collectZombieJob: --- 10, [3616027]
[2025-10-12 06:33:29] 2025-10-12 10:32:55,019 | INFO     | zombie collector waiting for pid 3616027
[2025-10-12 06:33:29] 2025-10-12 10:32:55,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:33:29] 2025-10-12 10:32:55,019 | INFO     | collected zombie processes
[2025-10-12 06:33:29] 2025-10-12 10:32:55,019 | INFO     | will attempt to kill all subprocesses of pid=3616027
[2025-10-12 06:33:29] 2025-10-12 10:32:58,124 | INFO     | process IDs to be killed: [3616027] (in reverse order)
[2025-10-12 06:33:29] 2025-10-12 10:32:58,457 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:33:29] 2025-10-12 10:32:58,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:33:29] 2025-10-12 10:32:58,520 | INFO     | did not find any defunct processes belonging to 3616027
[2025-10-12 06:33:29] 2025-10-12 10:32:58,591 | INFO     | did not find any defunct processes belonging to 3616027
[2025-10-12 06:33:29] 2025-10-12 10:32:58,591 | INFO     | ready for new job
[2025-10-12 06:33:29] 2025-10-12 10:32:58,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:33:29] 2025-10-12 10:32:58,597 | INFO     | ***************************************
[2025-10-12 06:33:29] 2025-10-12 10:32:58,597 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:33:29] 2025-10-12 10:32:58,597 | INFO     | ***************************************
[2025-10-12 06:33:29] 2025-10-12 10:32:58,597 | INFO     | 
[2025-10-12 06:33:29] 2025-10-12 10:32:58,619 | INFO     | architecture information:
[2025-10-12 06:33:29] 2025-10-12 10:32:58,623 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:33:29] 2025-10-12 10:32:58,665 | INFO     | cat /etc/os-release:
[2025-10-12 06:33:29] NAME="CentOS Linux"
[2025-10-12 06:33:29] VERSION="7 (Core)"
[2025-10-12 06:33:29] ID="centos"
[2025-10-12 06:33:29] ID_LIKE="rhel fedora"
[2025-10-12 06:33:29] VERSION_ID="7"
[2025-10-12 06:33:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:33:29] ANSI_COLOR="0;31"
[2025-10-12 06:33:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:33:29] HOME_URL="https://www.centos.org/"
[2025-10-12 06:33:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:33:29] 
[2025-10-12 06:33:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:33:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:33:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:33:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:33:29] 
[2025-10-12 06:33:29] 2025-10-12 10:32:58,665 | INFO     | ***************************************
[2025-10-12 06:33:29] 2025-10-12 10:32:59,169 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 06:33:29] 2025-10-12 10:32:59,200 | INFO     | sufficient remaining disk space (166831587328 B)
[2025-10-12 06:33:29] 2025-10-12 10:32:59,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:33:29] 2025-10-12 10:32:59,200 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:33:29] 2025-10-12 10:32:59,200 | INFO     | update_server=False
[2025-10-12 06:33:29] 2025-10-12 10:32:59,201 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:33:29] 2025-10-12 10:32:59,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:33:29] 2025-10-12 10:32:59,202 | INFO     | aborting loop
[2025-10-12 06:33:29] 2025-10-12 10:32:59,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:33:29] 2025-10-12 10:32:59,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:33:29] 2025-10-12 10:32:59,809 | INFO     | all data control threads have been joined
[2025-10-12 06:33:29] 2025-10-12 10:33:00,135 | INFO     | all payload control threads have been joined
[2025-10-12 06:33:29] 2025-10-12 10:33:00,216 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,220 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,220 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,435 | INFO     | [job] validate thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,524 | INFO     | all job control threads have been joined
[2025-10-12 06:33:29] 2025-10-12 10:33:00,693 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,815 | INFO     | [data] control thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:00,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:33:29] 2025-10-12 10:33:00,993 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,141 | INFO     | [payload] control thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,195 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,435 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,435 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,452 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,530 | INFO     | [job] control thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:01,747 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:04,989 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:33:29] 2025-10-12 10:33:08,136 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:33:29] 2025-10-12 10:33:08,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008844003136)>', '<ExcThread(monitor, started 140008562329344)>']
[2025-10-12 06:33:29] 2025-10-12 10:33:13,599 | INFO     | all workflow threads have been joined
[2025-10-12 06:33:29] 2025-10-12 10:33:13,599 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:33:29] 2025-10-12 10:33:13,599 | INFO     | traces error code: 0
[2025-10-12 06:33:29] 2025-10-12 10:33:13,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:33:29] 2025-10-12 10:33:28,490 | INFO     | PID=3593236 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:33:29] 2025-10-12 10:33:28,490 | INFO     | .. there are 88 such processes running
[2025-10-12 06:33:29] 2025-10-12 10:33:28,491 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:33:29] 2025-10-12 10:33:28,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:33:29] 2025-10-12 10:33:28,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:33:29] 2025-10-12 10:33:28,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:33:29] 2025-10-12 10:33:28,491 | INFO     | [monitor] control thread has ended
[2025-10-12 06:33:29] 2025-10-12 10:33:28,716 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:33:29] 2025-10-12 10:33:28,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:33:29] 2025-10-12 10:33:28,720 [wrapper] pilotpid: 3593236
[2025-10-12 06:33:29] 2025-10-12 10:33:28,722 [wrapper] Pilot exit status: 0
[2025-10-12 06:33:29] 2025-10-12 10:33:28,793 [wrapper] pandaids: 6838989009
[2025-10-12 06:33:29] 2025-10-12 10:33:29,200 [wrapper] cleanup supervisor_pilot 4142529 3593237
[2025-10-12 06:33:29] 2025-10-12 10:33:29,212 [wrapper] Test setup, not cleaning
[2025-10-12 06:33:29] 2025-10-12 10:33:29,231 [wrapper] apfmon messages muted
[2025-10-12 06:33:29] 2025-10-12 10:33:29,255 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:33:29] 2025-10-12 10:33:29,268 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:33:29]  *** Error codes and diagnostics ***
[2025-10-12 06:33:29]     "exeErrorCode": 0,
[2025-10-12 06:33:29]     "exeErrorDiag": "",
[2025-10-12 06:33:29]     "pilotErrorCode": 0,
[2025-10-12 06:33:29]     "pilotErrorDiag": "",
[2025-10-12 06:33:29]  *** Listing of results directory ***
[2025-10-12 06:33:29] total 408456
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 17:13 pilot3.tar.gz
[2025-10-12 06:33:29] -rwx------. 1 boincer umatlas     36292 Oct 11 17:29 runpilot2-wrapper.sh
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 17:29 queuedata.json
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas       100 Oct 12 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:33:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 05:28 run_atlas
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas       105 Oct 12 05:28 job.xml
[2025-10-12 06:33:29] -rw-r--r--. 2 boincer umatlas 220828428 Oct 12 05:28 EVNT.46676267._002623.pool.root.1
[2025-10-12 06:33:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:28 start_atlas.sh
[2025-10-12 06:33:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 05:28 shared
[2025-10-12 06:33:29] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 05:28 input.tar.gz
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas         0 Oct 12 05:28 boinc_lockfile
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 05:28 pandaJob.out
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas    975536 Oct 12 05:28 agis_schedconf.cvmfs.json
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas   1560580 Oct 12 05:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:33:29] drwx------. 5 boincer umatlas      4096 Oct 12 05:29 pilot3
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 06:28 init_data.xml
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas 191840521 Oct 12 06:31 HITS.46676269._065324.pool.root.1
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas       529 Oct 12 06:32 boinc_task_state.xml
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas      1034 Oct 12 06:32 memory_monitor_summary.json
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas    315710 Oct 12 06:32 log.46676269._065324.job.log.tgz.1
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas      7775 Oct 12 06:32 heartbeat.json
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 06:33 boinc_mmap_file
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas        27 Oct 12 06:33 wrapper_checkpoint.txt
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas        95 Oct 12 06:33 pilot_heartbeat.json
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas       823 Oct 12 06:33 pilotlog.txt
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas    527680 Oct 12 06:33 log.46676269._065324.job.log.1
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas       357 Oct 12 06:33 output.list
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas       620 Oct 12 06:33 runtime_log
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas    860160 Oct 12 06:33 result.tar.gz
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 06:33 runtime_log.err
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas       651 Oct 12 06:33 8DQLDm3KwR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMghNDm3FPEnm.diag
[2025-10-12 06:33:29] -rw-r--r--. 1 boincer umatlas     22323 Oct 12 06:33 stderr.txt
[2025-10-12 06:33:29] HITS file was successfully produced:
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas 191840521 Oct 12 06:31 shared/HITS.pool.root.1
[2025-10-12 06:33:29]  *** Contents of shared directory: ***
[2025-10-12 06:33:29] total 404428
[2025-10-12 06:33:29] -rw-r--r--. 2 boincer umatlas 220828428 Oct 12 05:28 ATLAS.root_0
[2025-10-12 06:33:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:28 start_atlas.sh
[2025-10-12 06:33:29] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 05:28 input.tar.gz
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas 191840521 Oct 12 06:31 HITS.pool.root.1
[2025-10-12 06:33:29] -rw-------. 1 boincer umatlas    860160 Oct 12 06:33 result.tar.gz
06:33:31 (3589038): run_atlas exited; CPU time 22411.798864
06:33:31 (3589038): called boinc_finish(0)

</stderr_txt>
]]>

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