Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:53:08 (3659864): wrapper (7.7.26015): starting
20:53:08 (3659864): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 20:53:08] Arguments: --nthreads 6
[2025-10-12 20:53:08] Threads: 6
[2025-10-12 20:53:08] Checking for CVMFS
[2025-10-12 20:53:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:53:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:53:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:53:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:53:13] 2.11.5.0 3651556 4264 73260 151619 0 188 38711096 52428801 1858 130560 0 13272243 99.998 144724 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://134.75.124.180:3128 0
[2025-10-12 20:53:13] CVMFS is ok
[2025-10-12 20:53:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:53:13] Checking for apptainer binary...
[2025-10-12 20:53:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:53:13] Running /usr/bin/apptainer --version
[2025-10-12 20:53:13] apptainer version 1.3.5-1.el9
[2025-10-12 20:53:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:53:13] testio008
[2025-10-12 20:53:13] apptainer works
[2025-10-12 20:53:13] Set ATHENA_PROC_NUMBER=6
[2025-10-12 20:53:13] Set ATHENA_CORE_NUMBER=6
[2025-10-12 20:53:13] Starting ATLAS job with PandaID=6839385013
[2025-10-12 20:53:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:01:34]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:01:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 22:01:34]  replicas=None
[2025-10-12 22:01:34]  scope=mc23_13p6TeV
[2025-10-12 22:01:34]  status=None
[2025-10-12 22:01:34]  status_code=0
[2025-10-12 22:01:34]  storage_token=
[2025-10-12 22:01:34]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6839385013/log.46676269._070257.job.log.tgz.1
[2025-10-12 22:01:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/8b/log.46676269._070257.job.log.tgz.1
[2025-10-12 22:01:34]  workdir=None
[2025-10-12 22:01:34] ]
[2025-10-12 22:01:34] 2025-10-12 13:00:42,874 | INFO     | transferring file log.46676269._070257.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6839385013/log.46676269._070257.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 22:01:34] 2025-10-12 13:00:42,874 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6839385013/log.46676269._070257.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._070257.job
[2025-10-12 22:01:34] 2025-10-12 13:00:42,888 | INFO     | adding to output.list: log.46676269._070257.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/8b/log.46676269._070257.job.log.tg
[2025-10-12 22:01:34] 2025-10-12 13:00:42,888 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:01:34] 2025-10-12 13:00:42,888 | INFO     | summary of transferred files:
[2025-10-12 22:01:34] 2025-10-12 13:00:42,889 | INFO     |  -- lfn=log.46676269._070257.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:01:34] 2025-10-12 13:00:42,889 | INFO     | stage-out finished correctly
[2025-10-12 22:01:34] 2025-10-12 13:00:43,170 | INFO     | monitor loop #298: job 0:6839385013 is in state 'finished'
[2025-10-12 22:01:34] 2025-10-12 13:00:43,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:01:34] 2025-10-12 13:00:44,309 | INFO     | time since job start (4043s) is within the limit (172800.0s)
[2025-10-12 22:01:34] 2025-10-12 13:00:45,570 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:01:34] 2025-10-12 13:00:45,673 | INFO     | monitor loop #299: job 0:6839385013 is in state 'finished'
[2025-10-12 22:01:34] 2025-10-12 13:00:45,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:01:34] 2025-10-12 13:00:46,314 | INFO     | time since job start (4045s) is within the limit (172800.0s)
[2025-10-12 22:01:34] 2025-10-12 13:00:48,176 | INFO     | monitor loop #300: job 0:6839385013 is in state 'finished'
[2025-10-12 22:01:34] 2025-10-12 13:00:48,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | job 6839385013 has state=finished
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | preparing for final server update for job 6839385013 in state='finished'
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | job 6839385013 has finished - writing final server update
[2025-10-12 22:01:34] 2025-10-12 13:00:48,237 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:01:34] 2025-10-12 13:00:48,238 | INFO     | executing command: lscpu
[2025-10-12 22:01:34] 2025-10-12 13:00:48,248 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:01:34] 2025-10-12 13:00:48,315 | INFO     | time since job start (4047s) is within the limit (172800.0s)
[2025-10-12 22:01:34] 2025-10-12 13:00:49,976 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:01:34] 2025-10-12 13:00:49,978 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4081.1782999999987
[2025-10-12 22:01:34] 2025-10-12 13:00:49,979 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6839385013/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:01:34] 2025-10-12 13:00:49,980 | INFO     | extracted standard info from prmon json
[2025-10-12 22:01:34] 2025-10-12 13:00:49,980 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:01:34] 2025-10-12 13:00:49,980 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:01:34] 2025-10-12 13:00:49,980 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:01:34] 2025-10-12 13:00:49,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | sum of deviations: -2793469868.0
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | mean x: 1760272095.0
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | mean y: 2472686.0677966103
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | -- intersect: 77237466466.35338
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | intersect: 77237466466.35338
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | chi2: 0.03687730499574512
[2025-10-12 22:01:34] 2025-10-12 13:00:49,981 | INFO     | -- intersect: 77237466466.35338
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | current memory leak: -43.88 B/s (using 59 data points, chi2=0.04)
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | could have reported an average CPU frequency of 3371 MHz (6 samples)
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | ..............................
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . Timing measurements:
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . get job = 0 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . initial setup = 4 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . payload setup = 2 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . stage-in = 0 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . payload execution = 4019 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . stage-out = 0 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | . log creation = 0 s
[2025-10-12 22:01:34] 2025-10-12 13:00:49,982 | INFO     | ..............................
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | 
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | job summary report
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | --------------------------------------------------
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | PanDA job id: 6839385013
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | task id: 46676269
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | errors: (none)
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | pilot state: finished 
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | transexitcode: 0
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | exeerrorcode: 0
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | exeerrordiag: 
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | exitcode: 0
[2025-10-12 22:01:34] 2025-10-12 13:00:50,026 | INFO     | exitmsg: OK
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | cpuconsumptiontime: 21516 s
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | nevents: 400
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | neventsw: 0
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | pid: 3670393
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | pgrp: 3670393
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | corecount: 6
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | event service: False
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | sizes: {0: 2348580, 1: 2348835, 3: 2349097, 12: 2349125, 4025: 2374997, 4027: 2383995, 4029: 2384179, 4034: 2384373}
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | --------------------------------------------------
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | 
[2025-10-12 22:01:34] 2025-10-12 13:00:50,027 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-12 22:01:34] 2025-10-12 13:00:50,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | job 6839385013 has completed (purged errors)
[2025-10-12 22:01:34] 2025-10-12 13:00:50,036 | INFO     | overall cleanup function is called
[2025-10-12 22:01:34] 2025-10-12 13:00:51,041 | INFO     | --- collectZombieJob: --- 10, [3670393]
[2025-10-12 22:01:34] 2025-10-12 13:00:51,042 | INFO     | zombie collector waiting for pid 3670393
[2025-10-12 22:01:34] 2025-10-12 13:00:51,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:01:34] 2025-10-12 13:00:51,042 | INFO     | collected zombie processes
[2025-10-12 22:01:34] 2025-10-12 13:00:51,042 | INFO     | will attempt to kill all subprocesses of pid=3670393
[2025-10-12 22:01:34] 2025-10-12 13:00:51,080 | INFO     | process IDs to be killed: [3670393] (in reverse order)
[2025-10-12 22:01:34] 2025-10-12 13:00:51,099 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:01:34] 2025-10-12 13:00:51,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:01:34] 2025-10-12 13:00:51,101 | INFO     | did not find any defunct processes belonging to 3670393
[2025-10-12 22:01:34] 2025-10-12 13:00:51,102 | INFO     | did not find any defunct processes belonging to 3670393
[2025-10-12 22:01:34] 2025-10-12 13:00:51,103 | INFO     | ready for new job
[2025-10-12 22:01:34] 2025-10-12 13:00:51,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:01:34] 2025-10-12 13:00:51,103 | INFO     | ***************************************
[2025-10-12 22:01:34] 2025-10-12 13:00:51,103 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:01:34] 2025-10-12 13:00:51,103 | INFO     | ***************************************
[2025-10-12 22:01:34] 2025-10-12 13:00:51,103 | INFO     | 
[2025-10-12 22:01:34] 2025-10-12 13:00:51,104 | INFO     | architecture information:
[2025-10-12 22:01:34] 2025-10-12 13:00:51,104 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:01:34] 2025-10-12 13:00:51,111 | INFO     | cat /etc/os-release:
[2025-10-12 22:01:34] NAME="CentOS Linux"
[2025-10-12 22:01:34] VERSION="7 (Core)"
[2025-10-12 22:01:34] ID="centos"
[2025-10-12 22:01:34] ID_LIKE="rhel fedora"
[2025-10-12 22:01:34] VERSION_ID="7"
[2025-10-12 22:01:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:01:34] ANSI_COLOR="0;31"
[2025-10-12 22:01:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:01:34] HOME_URL="https://www.centos.org/"
[2025-10-12 22:01:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:01:34] 
[2025-10-12 22:01:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:01:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:01:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:01:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:01:34] 
[2025-10-12 22:01:34] 2025-10-12 13:00:51,111 | INFO     | ***************************************
[2025-10-12 22:01:34] 2025-10-12 13:00:51,613 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | INFO     | sufficient remaining disk space (280078843904 B)
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | INFO     | update_server=False
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:01:34] 2025-10-12 13:00:51,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:01:34] 2025-10-12 13:00:51,663 | INFO     | all payload control threads have been joined
[2025-10-12 22:01:34] 2025-10-12 13:00:51,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:01:34] 2025-10-12 13:00:51,685 | INFO     | aborting loop
[2025-10-12 22:01:34] 2025-10-12 13:00:52,311 | INFO     | all job control threads have been joined
[2025-10-12 22:01:34] 2025-10-12 13:00:52,625 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:52,626 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:52,668 | INFO     | all data control threads have been joined
[2025-10-12 22:01:34] 2025-10-12 13:00:52,669 | INFO     | [payload] control thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:52,689 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:52,989 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,317 | INFO     | [job] control thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,509 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,575 | INFO     | [job] validate thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,627 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,673 | INFO     | [data] control thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,696 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,774 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,780 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:53,933 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:54,003 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:00:55,627 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:01:34] 2025-10-12 13:01:21,554 | INFO     | PID=3663649 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:01:34] 2025-10-12 13:01:21,554 | INFO     | .. there are 3 such processes running
[2025-10-12 22:01:34] 2025-10-12 13:01:21,554 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:01:34] 2025-10-12 13:01:21,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:01:34] 2025-10-12 13:01:21,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:01:34] 2025-10-12 13:01:27,719 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:01:34] 2025-10-12 13:01:29,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397240477504)>', '<ExcThread(monitor, started 140396239779584)>']
[2025-10-12 22:01:34] 2025-10-12 13:01:29,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:01:34] 2025-10-12 13:01:29,595 | INFO     | [monitor] control thread has ended
[2025-10-12 22:01:34] 2025-10-12 13:01:34,499 | INFO     | all workflow threads have been joined
[2025-10-12 22:01:34] 2025-10-12 13:01:34,500 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:01:34] 2025-10-12 13:01:34,500 | INFO     | traces error code: 0
[2025-10-12 22:01:34] 2025-10-12 13:01:34,500 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:01:34] 2025-10-12 13:01:34,581 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:01:34] 2025-10-12 13:01:34,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:01:34] 2025-10-12 13:01:34,585 [wrapper] pilotpid: 3663649
[2025-10-12 22:01:34] 2025-10-12 13:01:34,587 [wrapper] Pilot exit status: 0
[2025-10-12 22:01:34] 2025-10-12 13:01:34,594 [wrapper] pandaids: 6839385013
[2025-10-12 22:01:34] 2025-10-12 13:01:34,615 [wrapper] cleanup supervisor_pilot 3728121 3663650
[2025-10-12 22:01:34] 2025-10-12 13:01:34,617 [wrapper] Test setup, not cleaning
[2025-10-12 22:01:34] 2025-10-12 13:01:34,619 [wrapper] apfmon messages muted
[2025-10-12 22:01:34] 2025-10-12 13:01:34,621 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:01:34] 2025-10-12 13:01:34,622 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:01:34]  *** Error codes and diagnostics ***
[2025-10-12 22:01:34]     "exeErrorCode": 0,
[2025-10-12 22:01:34]     "exeErrorDiag": "",
[2025-10-12 22:01:34]     "pilotErrorCode": 0,
[2025-10-12 22:01:34]     "pilotErrorDiag": "",
[2025-10-12 22:01:34]  *** Listing of results directory ***
[2025-10-12 22:01:34] total 412964
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc    557409 Oct 12 12:35 pilot3.tar.gz
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc      5112 Oct 12 12:55 queuedata.json
[2025-10-12 22:01:34] -rwx------. 1 boinc boinc     36292 Oct 12 12:55 runpilot2-wrapper.sh
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc       100 Oct 12 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:01:34] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 20:53 run_atlas
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc       105 Oct 12 20:53 job.xml
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc      9509 Oct 12 20:53 init_data.xml
[2025-10-12 22:01:34] -rw-r--r--. 2 boinc boinc 221597834 Oct 12 20:53 EVNT.46676267._001297.pool.root.1
[2025-10-12 22:01:34] -rw-r--r--. 2 boinc boinc     15120 Oct 12 20:53 start_atlas.sh
[2025-10-12 22:01:34] drwxrwx--x. 2 boinc boinc        68 Oct 12 20:53 shared
[2025-10-12 22:01:34] -rw-r--r--. 2 boinc boinc    569691 Oct 12 20:53 input.tar.gz
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc         0 Oct 12 20:53 boinc_lockfile
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc      2550 Oct 12 20:53 pandaJob.out
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc    975520 Oct 12 20:53 agis_schedconf.cvmfs.json
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc   1560580 Oct 12 20:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:01:34] drwx------. 5 boinc boinc      4096 Oct 12 20:53 pilot3
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc 195575177 Oct 12 22:00 HITS.46676269._070257.pool.root.1
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc       529 Oct 12 22:00 boinc_task_state.xml
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc      1021 Oct 12 22:00 memory_monitor_summary.json
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc    301914 Oct 12 22:00 log.46676269._070257.job.log.tgz.1
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc        95 Oct 12 22:00 pilot_heartbeat.json
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc      7769 Oct 12 22:00 heartbeat.json
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc      8192 Oct 12 22:01 boinc_mmap_file
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc        27 Oct 12 22:01 wrapper_checkpoint.txt
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc      4824 Oct 12 22:01 pilotlog.txt
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc    604094 Oct 12 22:01 log.46676269._070257.job.log.1
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc       357 Oct 12 22:01 output.list
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc       620 Oct 12 22:01 runtime_log
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc    921600 Oct 12 22:01 result.tar.gz
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc      8661 Oct 12 22:01 runtime_log.err
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc       642 Oct 12 22:01 7YWMDmUM2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmH7SMDm3d41Co.diag
[2025-10-12 22:01:34] -rw-r--r--. 1 boinc boinc     21569 Oct 12 22:01 stderr.txt
[2025-10-12 22:01:34] HITS file was successfully produced:
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc 195575177 Oct 12 22:00 shared/HITS.pool.root.1
[2025-10-12 22:01:34]  *** Contents of shared directory: ***
[2025-10-12 22:01:34] total 408876
[2025-10-12 22:01:34] -rw-r--r--. 2 boinc boinc 221597834 Oct 12 20:53 ATLAS.root_0
[2025-10-12 22:01:34] -rw-r--r--. 2 boinc boinc     15120 Oct 12 20:53 start_atlas.sh
[2025-10-12 22:01:34] -rw-r--r--. 2 boinc boinc    569691 Oct 12 20:53 input.tar.gz
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc 195575177 Oct 12 22:00 HITS.pool.root.1
[2025-10-12 22:01:34] -rw-------. 1 boinc boinc    921600 Oct 12 22:01 result.tar.gz
22:01:35 (3659864): run_atlas exited; CPU time 21542.903251
22:01:35 (3659864): called boinc_finish(0)

</stderr_txt>
]]>

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