Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:37:16 (3637799): wrapper (7.7.26015): starting
20:37:16 (3637799): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 20:37:16] Arguments: --nthreads 6
[2025-10-12 20:37:16] Threads: 6
[2025-10-12 20:37:16] Checking for CVMFS
[2025-10-12 20:37:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:37:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:37:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:37:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:37:17] 2.11.5.0 3651556 4248 72868 151619 3 57 38710143 52428800 1858 130560 0 13202221 99.998 144654 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 20:37:17] CVMFS is ok
[2025-10-12 20:37:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:37:17] Checking for apptainer binary...
[2025-10-12 20:37:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:37:17] Running /usr/bin/apptainer --version
[2025-10-12 20:37:17] apptainer version 1.3.5-1.el9
[2025-10-12 20:37:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:37:17] testio008
[2025-10-12 20:37:17] apptainer works
[2025-10-12 20:37:17] Set ATHENA_PROC_NUMBER=6
[2025-10-12 20:37:17] Set ATHENA_CORE_NUMBER=6
[2025-10-12 20:37:17] Starting ATLAS job with PandaID=6839386592
[2025-10-12 20:37:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:44:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:44:39]  lfn=log.46676269._070888.job.log.tgz.1
[2025-10-12 21:44:39]  mtime=0
[2025-10-12 21:44:39]  protocol_id=None
[2025-10-12 21:44:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 21:44:39]  replicas=None
[2025-10-12 21:44:39]  scope=mc23_13p6TeV
[2025-10-12 21:44:39]  status=None
[2025-10-12 21:44:39]  status_code=0
[2025-10-12 21:44:39]  storage_token=
[2025-10-12 21:44:39]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6839386592/log.46676269._070888.job.log.tgz.1
[2025-10-12 21:44:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/49/log.46676269._070888.job.log.tgz.1
[2025-10-12 21:44:39]  workdir=None
[2025-10-12 21:44:39] ]
[2025-10-12 21:44:39] 2025-10-12 12:43:54,593 | INFO     | transferring file log.46676269._070888.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6839386592/log.46676269._070888.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 21:44:39] 2025-10-12 12:43:54,593 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6839386592/log.46676269._070888.job.log.tgz.1 /var/lib/boinc/slots/3/log.46676269._070888.job
[2025-10-12 21:44:39] 2025-10-12 12:43:54,601 | INFO     | adding to output.list: log.46676269._070888.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/49/log.46676269._070888.job.log.tg
[2025-10-12 21:44:39] 2025-10-12 12:43:54,601 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:44:39] 2025-10-12 12:43:54,601 | INFO     | summary of transferred files:
[2025-10-12 21:44:39] 2025-10-12 12:43:54,601 | INFO     |  -- lfn=log.46676269._070888.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:44:39] 2025-10-12 12:43:54,601 | INFO     | stage-out finished correctly
[2025-10-12 21:44:39] 2025-10-12 12:43:55,315 | INFO     | PID=3641570 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:44:39] 2025-10-12 12:43:55,315 | INFO     | .. there are 3 such processes running
[2025-10-12 21:44:39] 2025-10-12 12:43:55,883 | INFO     | monitor loop #293: job 0:6839386592 is in state 'finished'
[2025-10-12 21:44:39] 2025-10-12 12:43:55,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:44:39] 2025-10-12 12:43:56,114 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:44:39] 2025-10-12 12:43:56,315 | INFO     | time since job start (3990s) is within the limit (172800.0s)
[2025-10-12 21:44:39] 2025-10-12 12:43:56,315 | INFO     | 3995s have passed since pilot start - server update state is 'RUNNING'
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | job 6839386592 has state=finished
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | preparing for final server update for job 6839386592 in state='finished'
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | job 6839386592 has finished - writing final server update
[2025-10-12 21:44:39] 2025-10-12 12:43:56,428 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:44:39] 2025-10-12 12:43:56,430 | INFO     | executing command: lscpu
[2025-10-12 21:44:39] 2025-10-12 12:43:56,440 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:44:39] 2025-10-12 12:43:58,191 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:44:39] 2025-10-12 12:43:58,192 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4081.1161
[2025-10-12 21:44:39] 2025-10-12 12:43:58,194 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6839386592/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,195 | INFO     | extracted standard info from prmon json
[2025-10-12 21:44:39] 2025-10-12 12:43:58,195 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:44:39] 2025-10-12 12:43:58,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:44:39] 2025-10-12 12:43:58,195 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:44:39] 2025-10-12 12:43:58,195 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | sum of deviations: -7452710532.5
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | mean x: 1760271109.5
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | mean y: 2571590.2586206896
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | -- intersect: 216903059839.4988
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | intersect: 216903059839.4988
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | chi2: 0.0389560969921377
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | -- intersect: 216903059839.4988
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | current memory leak: -123.22 B/s (using 58 data points, chi2=0.04)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,196 | INFO     | could have reported an average CPU frequency of 3742 MHz (6 samples)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | ..............................
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . Timing measurements:
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . get job = 0 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . initial setup = 6 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . payload setup = 4 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . stage-in = 0 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . payload execution = 3966 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . stage-out = 0 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | . log creation = 0 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,197 | INFO     | ..............................
[2025-10-12 21:44:39] 2025-10-12 12:43:58,321 | INFO     | time since job start (3992s) is within the limit (172800.0s)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,581 | INFO     | 
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | job summary report
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | --------------------------------------------------
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | PanDA job id: 6839386592
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | task id: 46676269
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | errors: (none)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | pilot state: finished 
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | transexitcode: 0
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | exeerrorcode: 0
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | exeerrordiag: 
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | exitcode: 0
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | exitmsg: OK
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | cpuconsumptiontime: 21127 s
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | nevents: 400
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | neventsw: 0
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | pid: 3648311
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | pgrp: 3648311
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | corecount: 6
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | event service: False
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 3974: 2375019, 3975: 2384017, 3977: 2384073, 3979: 2384395}
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | --------------------------------------------------
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | 
[2025-10-12 21:44:39] 2025-10-12 12:43:58,582 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | job 6839386592 has completed (purged errors)
[2025-10-12 21:44:39] 2025-10-12 12:43:58,592 | INFO     | overall cleanup function is called
[2025-10-12 21:44:39] 2025-10-12 12:43:59,597 | INFO     | --- collectZombieJob: --- 10, [3648311]
[2025-10-12 21:44:39] 2025-10-12 12:43:59,598 | INFO     | zombie collector waiting for pid 3648311
[2025-10-12 21:44:39] 2025-10-12 12:43:59,598 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:44:39] 2025-10-12 12:43:59,598 | INFO     | collected zombie processes
[2025-10-12 21:44:39] 2025-10-12 12:43:59,598 | INFO     | will attempt to kill all subprocesses of pid=3648311
[2025-10-12 21:44:39] 2025-10-12 12:43:59,633 | INFO     | process IDs to be killed: [3648311] (in reverse order)
[2025-10-12 21:44:39] 2025-10-12 12:43:59,652 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:44:39] 2025-10-12 12:43:59,652 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:44:39] 2025-10-12 12:43:59,654 | INFO     | did not find any defunct processes belonging to 3648311
[2025-10-12 21:44:39] 2025-10-12 12:43:59,655 | INFO     | did not find any defunct processes belonging to 3648311
[2025-10-12 21:44:39] 2025-10-12 12:43:59,655 | INFO     | ready for new job
[2025-10-12 21:44:39] 2025-10-12 12:43:59,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:44:39] 2025-10-12 12:43:59,656 | INFO     | ***************************************
[2025-10-12 21:44:39] 2025-10-12 12:43:59,656 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:44:39] 2025-10-12 12:43:59,656 | INFO     | ***************************************
[2025-10-12 21:44:39] 2025-10-12 12:43:59,656 | INFO     | 
[2025-10-12 21:44:39] 2025-10-12 12:43:59,657 | INFO     | architecture information:
[2025-10-12 21:44:39] 2025-10-12 12:43:59,657 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:44:39] 2025-10-12 12:43:59,664 | INFO     | cat /etc/os-release:
[2025-10-12 21:44:39] NAME="CentOS Linux"
[2025-10-12 21:44:39] VERSION="7 (Core)"
[2025-10-12 21:44:39] ID="centos"
[2025-10-12 21:44:39] ID_LIKE="rhel fedora"
[2025-10-12 21:44:39] VERSION_ID="7"
[2025-10-12 21:44:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:44:39] ANSI_COLOR="0;31"
[2025-10-12 21:44:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:44:39] HOME_URL="https://www.centos.org/"
[2025-10-12 21:44:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:44:39] 
[2025-10-12 21:44:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:44:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:44:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:44:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:44:39] 
[2025-10-12 21:44:39] 2025-10-12 12:43:59,664 | INFO     | ***************************************
[2025-10-12 21:44:39] 2025-10-12 12:44:00,167 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-12 21:44:39] 2025-10-12 12:44:00,177 | INFO     | sufficient remaining disk space (279934140416 B)
[2025-10-12 21:44:39] 2025-10-12 12:44:00,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | INFO     | update_server=False
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:44:39] 2025-10-12 12:44:00,178 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:44:39] 2025-10-12 12:44:00,179 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:44:39] 2025-10-12 12:44:00,179 | INFO     | aborting loop
[2025-10-12 21:44:39] 2025-10-12 12:44:00,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:44:39] 2025-10-12 12:44:00,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:44:39] 2025-10-12 12:44:00,262 | INFO     | all job control threads have been joined
[2025-10-12 21:44:39] 2025-10-12 12:44:00,617 | INFO     | all payload control threads have been joined
[2025-10-12 21:44:39] 2025-10-12 12:44:01,079 | INFO     | all data control threads have been joined
[2025-10-12 21:44:39] 2025-10-12 12:44:01,183 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,183 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,184 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,267 | INFO     | [job] control thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,269 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,351 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,513 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,622 | INFO     | [payload] control thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:01,897 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:02,069 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:02,085 | INFO     | [data] control thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:02,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:44:39] 2025-10-12 12:44:02,183 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:02,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:02,359 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:02,635 | INFO     | [job] validate thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:06,166 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:44:39] 2025-10-12 12:44:32,826 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:44:39] 2025-10-12 12:44:34,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477139973952)>', '<ExcThread(monitor, started 140476787169024)>']
[2025-10-12 21:44:39] 2025-10-12 12:44:34,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:44:39] 2025-10-12 12:44:34,343 | INFO     | [monitor] control thread has ended
[2025-10-12 21:44:39] 2025-10-12 12:44:39,141 | INFO     | all workflow threads have been joined
[2025-10-12 21:44:39] 2025-10-12 12:44:39,142 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:44:39] 2025-10-12 12:44:39,142 | INFO     | traces error code: 0
[2025-10-12 21:44:39] 2025-10-12 12:44:39,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:44:39] 2025-10-12 12:44:39,199 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:44:39] 2025-10-12 12:44:39,200 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:44:39] 2025-10-12 12:44:39,201 [wrapper] pilotpid: 3641570
[2025-10-12 21:44:39] 2025-10-12 12:44:39,202 [wrapper] Pilot exit status: 0
[2025-10-12 21:44:39] 2025-10-12 12:44:39,206 [wrapper] pandaids: 6839386592
[2025-10-12 21:44:39] 2025-10-12 12:44:39,217 [wrapper] cleanup supervisor_pilot 3704057 3641571
[2025-10-12 21:44:39] 2025-10-12 12:44:39,222 [wrapper] Test setup, not cleaning
[2025-10-12 21:44:39] 2025-10-12 12:44:39,223 [wrapper] apfmon messages muted
[2025-10-12 21:44:39] 2025-10-12 12:44:39,224 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:44:39] 2025-10-12 12:44:39,225 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:44:39]  *** Error codes and diagnostics ***
[2025-10-12 21:44:39]     "exeErrorCode": 0,
[2025-10-12 21:44:39]     "exeErrorDiag": "",
[2025-10-12 21:44:39]     "pilotErrorCode": 0,
[2025-10-12 21:44:39]     "pilotErrorDiag": "",
[2025-10-12 21:44:39]  *** Listing of results directory ***
[2025-10-12 21:44:39] total 409172
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc    557409 Oct 12 13:11 pilot3.tar.gz
[2025-10-12 21:44:39] -rwx------. 1 boinc boinc     36292 Oct 12 13:14 runpilot2-wrapper.sh
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:14 queuedata.json
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc       100 Oct 12 20:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:44:39] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 20:37 run_atlas
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc       105 Oct 12 20:37 job.xml
[2025-10-12 21:44:39] -rw-r--r--. 2 boinc boinc 222477559 Oct 12 20:37 EVNT.46676267._003262.pool.root.1
[2025-10-12 21:44:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 20:37 start_atlas.sh
[2025-10-12 21:44:39] drwxrwx--x. 2 boinc boinc        68 Oct 12 20:37 shared
[2025-10-12 21:44:39] -rw-r--r--. 2 boinc boinc    569674 Oct 12 20:37 input.tar.gz
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc         0 Oct 12 20:37 boinc_lockfile
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc      2550 Oct 12 20:37 pandaJob.out
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc    975520 Oct 12 20:37 agis_schedconf.cvmfs.json
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc   1560580 Oct 12 20:37 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:44:39] drwx------. 5 boinc boinc      4096 Oct 12 20:37 pilot3
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc      9513 Oct 12 20:45 init_data.xml
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc 190861519 Oct 12 21:43 HITS.46676269._070888.pool.root.1
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc       529 Oct 12 21:43 boinc_task_state.xml
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc        95 Oct 12 21:43 pilot_heartbeat.json
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc      1021 Oct 12 21:43 memory_monitor_summary.json
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc    282538 Oct 12 21:43 log.46676269._070888.job.log.tgz.1
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc      7771 Oct 12 21:43 heartbeat.json
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc      8192 Oct 12 21:44 boinc_mmap_file
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc        27 Oct 12 21:44 wrapper_checkpoint.txt
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc      4553 Oct 12 21:44 pilotlog.txt
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc    597407 Oct 12 21:44 log.46676269._070888.job.log.1
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc       357 Oct 12 21:44 output.list
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc       620 Oct 12 21:44 runtime_log
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc    901120 Oct 12 21:44 result.tar.gz
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc      8661 Oct 12 21:44 runtime_log.err
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc       641 Oct 12 21:44 c3oKDmKe2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnBTMDmtBHJVm.diag
[2025-10-12 21:44:39] -rw-r--r--. 1 boinc boinc     21322 Oct 12 21:44 stderr.txt
[2025-10-12 21:44:39] HITS file was successfully produced:
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc 190861519 Oct 12 21:43 shared/HITS.pool.root.1
[2025-10-12 21:44:39]  *** Contents of shared directory: ***
[2025-10-12 21:44:39] total 405112
[2025-10-12 21:44:39] -rw-r--r--. 2 boinc boinc 222477559 Oct 12 20:37 ATLAS.root_0
[2025-10-12 21:44:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 20:37 start_atlas.sh
[2025-10-12 21:44:39] -rw-r--r--. 2 boinc boinc    569674 Oct 12 20:37 input.tar.gz
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc 190861519 Oct 12 21:43 HITS.pool.root.1
[2025-10-12 21:44:39] -rw-------. 1 boinc boinc    901120 Oct 12 21:44 result.tar.gz
21:44:41 (3637799): run_atlas exited; CPU time 21151.462439
21:44:41 (3637799): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN