Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:14:45 (19007): wrapper (7.7.26015): starting
05:14:45 (19007): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 05:14:45] Arguments: --nthreads 8
[2025-10-12 05:14:45] Threads: 8
[2025-10-12 05:14:45] Checking for CVMFS
[2025-10-12 05:14:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:14:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:14:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:14:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:14:45] 2.11.2.0 3213 627625 248368 151613 1 188 10392509 20275201 917 130560 1 358196030 99.992 26055234 20168 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:14:45] CVMFS is ok
[2025-10-12 05:14:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:14:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:14:45] Further information can be found at the LHC@home message board.
[2025-10-12 05:14:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:14:45] Checking for apptainer binary...
[2025-10-12 05:14:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:14:45] Running /usr/bin/apptainer --version
[2025-10-12 05:14:45] apptainer version 1.3.2-1.el7
[2025-10-12 05:14:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:14:46] c-205-38.aglt2.org
[2025-10-12 05:14:46] apptainer works
[2025-10-12 05:14:46] Set ATHENA_PROC_NUMBER=8
[2025-10-12 05:14:46] Set ATHENA_CORE_NUMBER=8
[2025-10-12 05:14:46] Starting ATLAS job with PandaID=6839385107
[2025-10-12 05:14:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:09:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:09:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 06:09:19]  replicas=None
[2025-10-12 06:09:19]  scope=mc23_13p6TeV
[2025-10-12 06:09:19]  status=None
[2025-10-12 06:09:19]  status_code=0
[2025-10-12 06:09:19]  storage_token=
[2025-10-12 06:09:19]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6839385107/log.46676269._070351.job.log.tgz.1
[2025-10-12 06:09:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/3f/log.46676269._070351.job.log.tgz.1
[2025-10-12 06:09:19]  workdir=None
[2025-10-12 06:09:19] ]
[2025-10-12 06:09:19] 2025-10-12 10:08:40,343 | INFO     | transferring file log.46676269._070351.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6839385107/log.46676269._070351.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 06:09:19] 2025-10-12 10:08:40,343 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6839385107/log.46676269._070351.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._070351.job
[2025-10-12 06:09:19] 2025-10-12 10:08:40,361 | INFO     | adding to output.list: log.46676269._070351.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/3f/log.46676269._070351.job.log.tg
[2025-10-12 06:09:19] 2025-10-12 10:08:40,362 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 06:09:19] 2025-10-12 10:08:40,362 | INFO     | summary of transferred files:
[2025-10-12 06:09:19] 2025-10-12 10:08:40,362 | INFO     |  -- lfn=log.46676269._070351.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:09:19] 2025-10-12 10:08:40,362 | INFO     | stage-out finished correctly
[2025-10-12 06:09:19] 2025-10-12 10:08:41,872 | INFO     | time since job start (3227s) is within the limit (172800.0s)
[2025-10-12 06:09:19] 2025-10-12 10:08:42,271 | WARNING  | process 29220 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 06:09:19] 2025-10-12 10:08:42,271 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839385107/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:09:19] 2025-10-12 10:08:42,355 | INFO     | number of running child processes to parent process 29220: 1
[2025-10-12 06:09:19] 2025-10-12 10:08:42,355 | INFO     | maximum number of monitored processes: 6
[2025-10-12 06:09:19] 2025-10-12 10:08:43,877 | INFO     | time since job start (3229s) is within the limit (172800.0s)
[2025-10-12 06:09:19] 2025-10-12 10:08:43,893 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:09:19] 2025-10-12 10:08:44,556 | INFO     | job 6839385107 has state=finished
[2025-10-12 06:09:19] 2025-10-12 10:08:44,557 | INFO     | preparing for final server update for job 6839385107 in state='finished'
[2025-10-12 06:09:19] 2025-10-12 10:08:44,557 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:09:19] 2025-10-12 10:08:44,557 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:09:19] 2025-10-12 10:08:44,557 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:09:19] 2025-10-12 10:08:44,558 | INFO     | job 6839385107 has finished - writing final server update
[2025-10-12 06:09:19] 2025-10-12 10:08:44,558 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:09:19] 2025-10-12 10:08:44,558 | INFO     | executing command: lscpu
[2025-10-12 06:09:19] 2025-10-12 10:08:44,587 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:09:19] 2025-10-12 10:08:44,858 | INFO     | monitor loop #245: job 0:6839385107 is in state 'finished'
[2025-10-12 06:09:19] 2025-10-12 10:08:44,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:09:19] 2025-10-12 10:08:45,882 | INFO     | time since job start (3231s) is within the limit (172800.0s)
[2025-10-12 06:09:19] 2025-10-12 10:08:46,966 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 06:09:19] 2025-10-12 10:08:46,968 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2671.0566875
[2025-10-12 06:09:19] 2025-10-12 10:08:46,969 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839385107/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:09:19] 2025-10-12 10:08:46,969 | INFO     | extracted standard info from prmon json
[2025-10-12 06:09:19] 2025-10-12 10:08:46,970 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:09:19] 2025-10-12 10:08:46,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:09:19] 2025-10-12 10:08:46,970 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:09:19] 2025-10-12 10:08:46,970 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | sum of square deviations: 30168007.5
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | sum of deviations: 236099920.49999997
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | mean x: 1760262192.5
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | mean y: 2541408.847826087
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | -- intersect: -13773567726.248539
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | intersect: -13773567726.248539
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | chi2: 0.001254787674187321
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | -- intersect: -13773567726.248539
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | current memory leak: 7.83 B/s (using 46 data points, chi2=0.00)
[2025-10-12 06:09:19] 2025-10-12 10:08:46,971 | INFO     | could have reported an average CPU frequency of 2946 MHz (5 samples)
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | ..............................
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . Timing measurements:
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . get job = 0 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . initial setup = 2 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . payload setup = 3 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . stage-in = 0 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . payload execution = 3203 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . stage-out = 0 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | . log creation = 0 s
[2025-10-12 06:09:19] 2025-10-12 10:08:46,972 | INFO     | ..............................
[2025-10-12 06:09:19] 2025-10-12 10:08:47,015 | INFO     | 
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | job summary report
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | --------------------------------------------------
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | PanDA job id: 6839385107
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | task id: 46676269
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | errors: (none)
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:09:19] 2025-10-12 10:08:47,016 | INFO     | pilot state: finished 
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | transexitcode: 0
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | exeerrorcode: 0
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | exeerrordiag: 
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | exitcode: 0
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | exitmsg: OK
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | cpuconsumptiontime: 23644 s
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | nevents: 400
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | neventsw: 0
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | pid: 29220
[2025-10-12 06:09:19] 2025-10-12 10:08:47,017 | INFO     | pgrp: 29220
[2025-10-12 06:09:19] 2025-10-12 10:08:47,018 | INFO     | corecount: 8
[2025-10-12 06:09:19] 2025-10-12 10:08:47,018 | INFO     | event service: False
[2025-10-12 06:09:19] 2025-10-12 10:08:47,018 | INFO     | sizes: {0: 2348028, 1: 2348884, 4: 2349146, 12: 2349174, 3210: 2374720, 3212: 2383718, 3216: 2383902, 3219: 2384128}
[2025-10-12 06:09:19] 2025-10-12 10:08:47,018 | INFO     | --------------------------------------------------
[2025-10-12 06:09:19] 2025-10-12 10:08:47,018 | INFO     | 
[2025-10-12 06:09:19] 2025-10-12 10:08:47,018 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 06:09:19] 2025-10-12 10:08:47,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:09:19] 2025-10-12 10:08:47,040 | INFO     | job 6839385107 has completed (purged errors)
[2025-10-12 06:09:19] 2025-10-12 10:08:47,041 | INFO     | overall cleanup function is called
[2025-10-12 06:09:19] 2025-10-12 10:08:48,048 | INFO     | --- collectZombieJob: --- 10, [29220]
[2025-10-12 06:09:19] 2025-10-12 10:08:48,048 | INFO     | zombie collector waiting for pid 29220
[2025-10-12 06:09:19] 2025-10-12 10:08:48,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:09:19] 2025-10-12 10:08:48,049 | INFO     | collected zombie processes
[2025-10-12 06:09:19] 2025-10-12 10:08:48,049 | INFO     | will attempt to kill all subprocesses of pid=29220
[2025-10-12 06:09:19] 2025-10-12 10:08:48,160 | INFO     | process IDs to be killed: [29220] (in reverse order)
[2025-10-12 06:09:19] 2025-10-12 10:08:48,208 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:09:19] 2025-10-12 10:08:48,208 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:09:19] 2025-10-12 10:08:48,210 | INFO     | did not find any defunct processes belonging to 29220
[2025-10-12 06:09:19] 2025-10-12 10:08:48,212 | INFO     | did not find any defunct processes belonging to 29220
[2025-10-12 06:09:19] 2025-10-12 10:08:48,212 | INFO     | ready for new job
[2025-10-12 06:09:19] 2025-10-12 10:08:48,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:09:19] 2025-10-12 10:08:48,214 | INFO     | ***************************************
[2025-10-12 06:09:19] 2025-10-12 10:08:48,214 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:09:19] 2025-10-12 10:08:48,214 | INFO     | ***************************************
[2025-10-12 06:09:19] 2025-10-12 10:08:48,214 | INFO     | 
[2025-10-12 06:09:19] 2025-10-12 10:08:48,215 | INFO     | architecture information:
[2025-10-12 06:09:19] 2025-10-12 10:08:48,215 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:09:19] 2025-10-12 10:08:48,227 | INFO     | cat /etc/os-release:
[2025-10-12 06:09:19] NAME="CentOS Linux"
[2025-10-12 06:09:19] VERSION="7 (Core)"
[2025-10-12 06:09:19] ID="centos"
[2025-10-12 06:09:19] ID_LIKE="rhel fedora"
[2025-10-12 06:09:19] VERSION_ID="7"
[2025-10-12 06:09:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:09:19] ANSI_COLOR="0;31"
[2025-10-12 06:09:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:09:19] HOME_URL="https://www.centos.org/"
[2025-10-12 06:09:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:09:19] 
[2025-10-12 06:09:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:09:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:09:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:09:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:09:19] 
[2025-10-12 06:09:19] 2025-10-12 10:08:48,228 | INFO     | ***************************************
[2025-10-12 06:09:19] 2025-10-12 10:08:48,731 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 06:09:19] 2025-10-12 10:08:48,750 | INFO     | sufficient remaining disk space (32642170880 B)
[2025-10-12 06:09:19] 2025-10-12 10:08:48,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:09:19] 2025-10-12 10:08:48,750 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:09:19] 2025-10-12 10:08:48,750 | INFO     | update_server=False
[2025-10-12 06:09:19] 2025-10-12 10:08:48,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:09:19] 2025-10-12 10:08:48,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:09:19] 2025-10-12 10:08:48,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:09:19] 2025-10-12 10:08:48,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:09:19] 2025-10-12 10:08:48,752 | INFO     | aborting loop
[2025-10-12 06:09:19] 2025-10-12 10:08:48,791 | INFO     | all data control threads have been joined
[2025-10-12 06:09:19] 2025-10-12 10:08:49,756 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:49,757 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:49,757 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:49,769 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:49,770 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:49,796 | INFO     | [data] control thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:49,871 | INFO     | all payload control threads have been joined
[2025-10-12 06:09:19] 2025-10-12 10:08:49,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:09:19] 2025-10-12 10:08:49,996 | INFO     | all job control threads have been joined
[2025-10-12 06:09:19] 2025-10-12 10:08:50,099 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:50,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:50,525 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:50,757 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:50,877 | INFO     | [payload] control thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:51,001 | INFO     | [job] control thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:51,169 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:51,170 | INFO     | [job] validate thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:51,245 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:53,981 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:09:19] 2025-10-12 10:08:59,491 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:09:19] 2025-10-12 10:09:00,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323517069120)>', '<ExcThread(monitor, started 140322931721984)>']
[2025-10-12 06:09:19] 2025-10-12 10:09:05,389 | INFO     | all workflow threads have been joined
[2025-10-12 06:09:19] 2025-10-12 10:09:05,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:09:19] 2025-10-12 10:09:05,389 | INFO     | traces error code: 0
[2025-10-12 06:09:19] 2025-10-12 10:09:05,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:09:19] 2025-10-12 10:09:19,074 | INFO     | PID=22689 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 06:09:19] 2025-10-12 10:09:19,075 | INFO     | .. there are 2 such processes running
[2025-10-12 06:09:19] 2025-10-12 10:09:19,075 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:09:19] 2025-10-12 10:09:19,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:09:19] 2025-10-12 10:09:19,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:09:19] 2025-10-12 10:09:19,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:09:19] 2025-10-12 10:09:19,075 | INFO     | [monitor] control thread has ended
[2025-10-12 06:09:19] 2025-10-12 10:09:19,169 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:09:19] 2025-10-12 10:09:19,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:09:19] 2025-10-12 10:09:19,174 [wrapper] pilotpid: 22689
[2025-10-12 06:09:19] 2025-10-12 10:09:19,177 [wrapper] Pilot exit status: 0
[2025-10-12 06:09:19] 2025-10-12 10:09:19,186 [wrapper] pandaids: 6839385107
[2025-10-12 06:09:19] 2025-10-12 10:09:19,212 [wrapper] cleanup supervisor_pilot  3534 22690
[2025-10-12 06:09:19] 2025-10-12 10:09:19,214 [wrapper] Test setup, not cleaning
[2025-10-12 06:09:19] 2025-10-12 10:09:19,217 [wrapper] apfmon messages muted
[2025-10-12 06:09:19] 2025-10-12 10:09:19,220 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:09:19] 2025-10-12 10:09:19,223 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:09:19]  *** Error codes and diagnostics ***
[2025-10-12 06:09:19]     "exeErrorCode": 0,
[2025-10-12 06:09:19]     "exeErrorDiag": "",
[2025-10-12 06:09:19]     "pilotErrorCode": 0,
[2025-10-12 06:09:19]     "pilotErrorDiag": "",
[2025-10-12 06:09:19]  *** Listing of results directory ***
[2025-10-12 06:09:19] total 408280
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 23:35 pilot3.tar.gz
[2025-10-12 06:09:19] -rwx------ 1 boincer umatlas     36292 Oct 12 00:02 runpilot2-wrapper.sh
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:02 queuedata.json
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas       100 Oct 12 05:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:09:19] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 05:14 run_atlas
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas       105 Oct 12 05:14 job.xml
[2025-10-12 06:09:19] -rw-r--r-- 2 boincer umatlas 222359834 Oct 12 05:14 EVNT.46676267._003226.pool.root.1
[2025-10-12 06:09:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 05:14 start_atlas.sh
[2025-10-12 06:09:19] drwxrwx--x 2 boincer umatlas      4096 Oct 12 05:14 shared
[2025-10-12 06:09:19] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 05:14 input.tar.gz
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas         0 Oct 12 05:14 boinc_lockfile
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 05:14 pandaJob.out
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas    975520 Oct 12 05:14 agis_schedconf.cvmfs.json
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas   1560580 Oct 12 05:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:09:19] drwx------ 5 boincer umatlas      4096 Oct 12 05:14 pilot3
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas      6136 Oct 12 06:04 init_data.xml
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas 190180475 Oct 12 06:08 HITS.46676269._070351.pool.root.1
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas       529 Oct 12 06:08 boinc_task_state.xml
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas        95 Oct 12 06:08 pilot_heartbeat.json
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas      1047 Oct 12 06:08 memory_monitor_summary.json
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas    323534 Oct 12 06:08 log.46676269._070351.job.log.tgz.1
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas      7836 Oct 12 06:08 heartbeat.json
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 06:08 boinc_mmap_file
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas        27 Oct 12 06:08 wrapper_checkpoint.txt
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas       820 Oct 12 06:09 pilotlog.txt
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas    497648 Oct 12 06:09 log.46676269._070351.job.log.1
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas       357 Oct 12 06:09 output.list
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas       620 Oct 12 06:09 runtime_log
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas    839680 Oct 12 06:09 result.tar.gz
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 06:09 runtime_log.err
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas       656 Oct 12 06:09 JXOLDmUT2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmI8SMDmNFzaDo.diag
[2025-10-12 06:09:19] -rw-r--r-- 1 boincer umatlas     21863 Oct 12 06:09 stderr.txt
[2025-10-12 06:09:19] HITS file was successfully produced:
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas 190180475 Oct 12 06:08 shared/HITS.pool.root.1
[2025-10-12 06:09:19]  *** Contents of shared directory: ***
[2025-10-12 06:09:19] total 404276
[2025-10-12 06:09:19] -rw-r--r-- 2 boincer umatlas 222359834 Oct 12 05:14 ATLAS.root_0
[2025-10-12 06:09:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 05:14 start_atlas.sh
[2025-10-12 06:09:19] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 05:14 input.tar.gz
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas 190180475 Oct 12 06:08 HITS.pool.root.1
[2025-10-12 06:09:19] -rw------- 1 boincer umatlas    839680 Oct 12 06:09 result.tar.gz
06:09:20 (19007): run_atlas exited; CPU time 23618.594899
06:09:20 (19007): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN