Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:21:37 (2878291): wrapper (7.7.26015): starting
21:21:37 (2878291): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 21:21:37] Arguments: --nthreads 3
[2025-10-12 21:21:37] Threads: 3
[2025-10-12 21:21:37] Checking for CVMFS
[2025-10-12 21:21:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:21:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:21:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:21:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:21:37] 2.9.2.0 233307 4760 65776 151634 4 1 2956998 36864001 0 130560 0 3476920 99.990 161082 904 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:21:37] CVMFS is ok
[2025-10-12 21:21:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:21:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:21:37] Further information can be found at the LHC@home message board.
[2025-10-12 21:21:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:21:37] Checking for apptainer binary...
[2025-10-12 21:21:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:21:38] Running /usr/bin/apptainer --version
[2025-10-12 21:21:38] apptainer version 1.4.1-1.1
[2025-10-12 21:21:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:21:38] atlasA221b
[2025-10-12 21:21:38] apptainer works
[2025-10-12 21:21:38] Set ATHENA_PROC_NUMBER=3
[2025-10-12 21:21:38] Set ATHENA_CORE_NUMBER=3
[2025-10-12 21:21:38] Starting ATLAS job with PandaID=6839385125
[2025-10-12 21:21:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:59:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:59:01] 2025-10-12 20:58:27,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:59:01] 2025-10-12 20:58:27,720 | INFO     | job 6839385125 has completed (purged errors)
[2025-10-12 22:59:01] 2025-10-12 20:58:27,720 | INFO     | overall cleanup function is called
[2025-10-12 22:59:01] 2025-10-12 20:58:28,726 | INFO     | --- collectZombieJob: --- 10, [2888586]
[2025-10-12 22:59:01] 2025-10-12 20:58:28,726 | INFO     | zombie collector waiting for pid 2888586
[2025-10-12 22:59:01] 2025-10-12 20:58:28,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:59:01] 2025-10-12 20:58:28,726 | INFO     | collected zombie processes
[2025-10-12 22:59:01] 2025-10-12 20:58:28,726 | INFO     | will attempt to kill all subprocesses of pid=2888586
[2025-10-12 22:59:01] 2025-10-12 20:58:28,795 | INFO     | process IDs to be killed: [2888586] (in reverse order)
[2025-10-12 22:59:01] 2025-10-12 20:58:28,829 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:59:01] 2025-10-12 20:58:28,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:59:01] 2025-10-12 20:58:28,831 | INFO     | did not find any defunct processes belonging to 2888586
[2025-10-12 22:59:01] 2025-10-12 20:58:28,833 | INFO     | did not find any defunct processes belonging to 2888586
[2025-10-12 22:59:01] 2025-10-12 20:58:28,833 | INFO     | ready for new job
[2025-10-12 22:59:01] 2025-10-12 20:58:28,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:59:01] 2025-10-12 20:58:28,834 | INFO     | ***************************************
[2025-10-12 22:59:01] 2025-10-12 20:58:28,834 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:59:01] 2025-10-12 20:58:28,834 | INFO     | ***************************************
[2025-10-12 22:59:01] 2025-10-12 20:58:28,834 | INFO     | 
[2025-10-12 22:59:01] 2025-10-12 20:58:28,834 | INFO     | architecture information:
[2025-10-12 22:59:01] 2025-10-12 20:58:28,835 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:59:01] 2025-10-12 20:58:28,845 | INFO     | cat /etc/os-release:
[2025-10-12 22:59:01] NAME="CentOS Linux"
[2025-10-12 22:59:01] VERSION="7 (Core)"
[2025-10-12 22:59:01] ID="centos"
[2025-10-12 22:59:01] ID_LIKE="rhel fedora"
[2025-10-12 22:59:01] VERSION_ID="7"
[2025-10-12 22:59:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:59:01] ANSI_COLOR="0;31"
[2025-10-12 22:59:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:59:01] HOME_URL="https://www.centos.org/"
[2025-10-12 22:59:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:59:01] 
[2025-10-12 22:59:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:59:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:59:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:59:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:59:01] 
[2025-10-12 22:59:01] 2025-10-12 20:58:28,846 | INFO     | ***************************************
[2025-10-12 22:59:01] 2025-10-12 20:58:29,349 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:59:01] 2025-10-12 20:58:29,362 | INFO     | sufficient remaining disk space (357756305408 B)
[2025-10-12 22:59:01] 2025-10-12 20:58:29,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:59:01] 2025-10-12 20:58:29,362 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:59:01] 2025-10-12 20:58:29,362 | INFO     | update_server=False
[2025-10-12 22:59:01] 2025-10-12 20:58:29,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:59:01] 2025-10-12 20:58:29,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:59:01] 2025-10-12 20:58:29,565 | INFO     | all payload control threads have been joined
[2025-10-12 22:59:01] 2025-10-12 20:58:29,621 | INFO     | all job control threads have been joined
[2025-10-12 22:59:01] 2025-10-12 20:58:29,681 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:59:01] 2025-10-12 20:58:29,681 | INFO     | aborting loop
[2025-10-12 22:59:01] 2025-10-12 20:58:30,367 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,407 | INFO     | all data control threads have been joined
[2025-10-12 22:59:01] 2025-10-12 20:58:30,570 | INFO     | [payload] control thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,626 | INFO     | [job] control thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,682 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,764 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,764 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,769 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,769 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:30,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:59:01] 2025-10-12 20:58:30,919 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:31,412 | INFO     | [data] control thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:31,532 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:31,770 | INFO     | [job] validate thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:32,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:59:01] 2025-10-12 20:58:32,822 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:33,324 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:33,369 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:40,266 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:59:01] 2025-10-12 20:58:41,271 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:59:01] 2025-10-12 20:58:54,859 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:59:01] 2025-10-12 20:58:56,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140527878227776)>', '<ExcThread(monitor, started 140527529862912)>']
[2025-10-12 22:59:01] 2025-10-12 20:58:59,751 | INFO     | PID=2882051 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:59:01] 2025-10-12 20:58:59,752 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:59:01] 2025-10-12 20:58:59,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:59:01] 2025-10-12 20:58:59,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:59:01] 2025-10-12 20:58:59,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:59:01] 2025-10-12 20:58:59,752 | INFO     | [monitor] control thread has ended
[2025-10-12 22:59:01] 2025-10-12 20:59:01,849 | INFO     | all workflow threads have been joined
[2025-10-12 22:59:01] 2025-10-12 20:59:01,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:59:01] 2025-10-12 20:59:01,850 | INFO     | traces error code: 0
[2025-10-12 22:59:01] 2025-10-12 20:59:01,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:59:01] 2025-10-12 20:59:01,901 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:59:01] 2025-10-12 20:59:01,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:59:01] 2025-10-12 20:59:01,907 [wrapper] pilotpid: 2882051
[2025-10-12 22:59:01] 2025-10-12 20:59:01,909 [wrapper] Pilot exit status: 0
[2025-10-12 22:59:01] 2025-10-12 20:59:01,917 [wrapper] pandaids: 6839385125
[2025-10-12 22:59:01] 2025-10-12 20:59:01,937 [wrapper] cleanup supervisor_pilot 2926688 2882052
[2025-10-12 22:59:01] 2025-10-12 20:59:01,940 [wrapper] Test setup, not cleaning
[2025-10-12 22:59:01] 2025-10-12 20:59:01,943 [wrapper] apfmon messages muted
[2025-10-12 22:59:01] 2025-10-12 20:59:01,946 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:59:01] 2025-10-12 20:59:01,950 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:59:01]  *** Error codes and diagnostics ***
[2025-10-12 22:59:01]     "exeErrorCode": 0,
[2025-10-12 22:59:01]     "exeErrorDiag": "",
[2025-10-12 22:59:01]     "pilotErrorCode": 0,
[2025-10-12 22:59:01]     "pilotErrorDiag": "",
[2025-10-12 22:59:01]  *** Listing of results directory ***
[2025-10-12 22:59:01] total 413976
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc    557409 Oct 12 05:35 pilot3.tar.gz
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:03 queuedata.json
[2025-10-12 22:59:01] -rwx------ 1 boinc boinc     36292 Oct 12 06:03 runpilot2-wrapper.sh
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:59:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:21 run_atlas
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:21 job.xml
[2025-10-12 22:59:01] -rw-r--r-- 2 boinc boinc 222885020 Oct 12 21:21 EVNT.46676267._003227.pool.root.1
[2025-10-12 22:59:01] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:21 shared
[2025-10-12 22:59:01] -rw-r--r-- 2 boinc boinc    569683 Oct 12 21:21 input.tar.gz
[2025-10-12 22:59:01] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:21 start_atlas.sh
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:21 boinc_setup_complete
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc      6197 Oct 12 21:21 init_data.xml
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:21 boinc_lockfile
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:21 pandaJob.out
[2025-10-12 22:59:01] -rw------- 1 boinc boinc    975528 Oct 12 21:21 agis_schedconf.cvmfs.json
[2025-10-12 22:59:01] -rw------- 1 boinc boinc   1560580 Oct 12 21:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:59:01] drwx------ 5 boinc boinc      4096 Oct 12 21:21 pilot3
[2025-10-12 22:59:01] -rw------- 1 boinc boinc 194894890 Oct 12 22:57 HITS.46676269._070369.pool.root.1
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:58 boinc_task_state.xml
[2025-10-12 22:59:01] -rw------- 1 boinc boinc      1028 Oct 12 22:58 memory_monitor_summary.json
[2025-10-12 22:59:01] -rw------- 1 boinc boinc    273822 Oct 12 22:58 log.46676269._070369.job.log.tgz.1
[2025-10-12 22:59:01] -rw------- 1 boinc boinc        95 Oct 12 22:58 pilot_heartbeat.json
[2025-10-12 22:59:01] -rw------- 1 boinc boinc      7776 Oct 12 22:58 heartbeat.json
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:58 wrapper_checkpoint.txt
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:58 boinc_mmap_file
[2025-10-12 22:59:01] -rw------- 1 boinc boinc      4824 Oct 12 22:59 pilotlog.txt
[2025-10-12 22:59:01] -rw------- 1 boinc boinc    842107 Oct 12 22:59 log.46676269._070369.job.log.1
[2025-10-12 22:59:01] -rw------- 1 boinc boinc       357 Oct 12 22:59 output.list
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:59 runtime_log
[2025-10-12 22:59:01] -rw------- 1 boinc boinc   1136640 Oct 12 22:59 result.tar.gz
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc      8797 Oct 12 22:59 runtime_log.err
[2025-10-12 22:59:01] -rw------- 1 boinc boinc       663 Oct 12 22:59 VRVNDmEU2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDma8SMDmME6Knn.diag
[2025-10-12 22:59:01] -rw-r--r-- 1 boinc boinc     12833 Oct 12 22:59 stderr.txt
[2025-10-12 22:59:02] HITS file was successfully produced:
[2025-10-12 22:59:02] -rw------- 1 boinc boinc 194894890 Oct 12 22:57 shared/HITS.pool.root.1
[2025-10-12 22:59:02]  *** Contents of shared directory: ***
[2025-10-12 22:59:02] total 409688
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc 222885020 Oct 12 21:21 ATLAS.root_0
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc    569683 Oct 12 21:21 input.tar.gz
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:21 start_atlas.sh
[2025-10-12 22:59:02] -rw------- 1 boinc boinc 194894890 Oct 12 22:57 HITS.pool.root.1
[2025-10-12 22:59:02] -rw------- 1 boinc boinc   1136640 Oct 12 22:59 result.tar.gz
22:59:03 (2878291): run_atlas exited; CPU time 16737.685987
22:59:03 (2878291): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN