Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:47:42 (332911): wrapper (7.7.26015): starting
21:47:42 (332911): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 21:47:42] Arguments: --nthreads 4
[2025-10-12 21:47:42] Threads: 4
[2025-10-12 21:47:42] Checking for CVMFS
[2025-10-12 21:47:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:47:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:47:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:47:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:47:42] 2.9.2.0 4261 929 82460 151635 1 57 32995851 36864000 0 130560 0 851032 99.993 34476 628 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 21:47:42] CVMFS is ok
[2025-10-12 21:47:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:47:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:47:42] Further information can be found at the LHC@home message board.
[2025-10-12 21:47:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:47:42] Checking for apptainer binary...
[2025-10-12 21:47:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:47:42] Running /usr/bin/apptainer --version
[2025-10-12 21:47:42] apptainer version 1.4.1-1.1
[2025-10-12 21:47:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:47:42] atlasA237
[2025-10-12 21:47:42] apptainer works
[2025-10-12 21:47:42] Set ATHENA_PROC_NUMBER=4
[2025-10-12 21:47:42] Set ATHENA_CORE_NUMBER=4
[2025-10-12 21:47:42] Starting ATLAS job with PandaID=6839591902
[2025-10-12 21:47:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:59:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:59:02] 2025-10-12 20:58:37,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:59:02] 2025-10-12 20:58:37,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:59:02] 2025-10-12 20:58:37,357 | INFO     | job 6839591902 has completed (purged errors)
[2025-10-12 22:59:02] 2025-10-12 20:58:37,357 | INFO     | overall cleanup function is called
[2025-10-12 22:59:02] 2025-10-12 20:58:38,364 | INFO     | --- collectZombieJob: --- 10, [343253]
[2025-10-12 22:59:02] 2025-10-12 20:58:38,364 | INFO     | zombie collector waiting for pid 343253
[2025-10-12 22:59:02] 2025-10-12 20:58:38,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:59:02] 2025-10-12 20:58:38,364 | INFO     | collected zombie processes
[2025-10-12 22:59:02] 2025-10-12 20:58:38,364 | INFO     | will attempt to kill all subprocesses of pid=343253
[2025-10-12 22:59:02] 2025-10-12 20:58:38,410 | INFO     | process IDs to be killed: [343253] (in reverse order)
[2025-10-12 22:59:02] 2025-10-12 20:58:38,441 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:59:02] 2025-10-12 20:58:38,441 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:59:02] 2025-10-12 20:58:38,443 | INFO     | did not find any defunct processes belonging to 343253
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | did not find any defunct processes belonging to 343253
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | ready for new job
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | ***************************************
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | ***************************************
[2025-10-12 22:59:02] 2025-10-12 20:58:38,445 | INFO     | 
[2025-10-12 22:59:02] 2025-10-12 20:58:38,446 | INFO     | architecture information:
[2025-10-12 22:59:02] 2025-10-12 20:58:38,446 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:59:02] 2025-10-12 20:58:38,458 | INFO     | cat /etc/os-release:
[2025-10-12 22:59:02] NAME="CentOS Linux"
[2025-10-12 22:59:02] VERSION="7 (Core)"
[2025-10-12 22:59:02] ID="centos"
[2025-10-12 22:59:02] ID_LIKE="rhel fedora"
[2025-10-12 22:59:02] VERSION_ID="7"
[2025-10-12 22:59:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:59:02] ANSI_COLOR="0;31"
[2025-10-12 22:59:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:59:02] HOME_URL="https://www.centos.org/"
[2025-10-12 22:59:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:59:02] 
[2025-10-12 22:59:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:59:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:59:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:59:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:59:02] 
[2025-10-12 22:59:02] 2025-10-12 20:58:38,458 | INFO     | ***************************************
[2025-10-12 22:59:02] 2025-10-12 20:58:38,961 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 22:59:02] 2025-10-12 20:58:38,976 | INFO     | sufficient remaining disk space (326302171136 B)
[2025-10-12 22:59:02] 2025-10-12 20:58:38,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | INFO     | update_server=False
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | INFO     | aborting loop
[2025-10-12 22:59:02] 2025-10-12 20:58:38,977 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:59:02] 2025-10-12 20:58:38,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:59:02] 2025-10-12 20:58:38,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:59:02] 2025-10-12 20:58:39,188 | INFO     | all job control threads have been joined
[2025-10-12 22:59:02] 2025-10-12 20:58:39,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:59:02] 2025-10-12 20:58:39,336 | INFO     | all data control threads have been joined
[2025-10-12 22:59:02] 2025-10-12 20:58:39,858 | INFO     | all payload control threads have been joined
[2025-10-12 22:59:02] 2025-10-12 20:58:39,982 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:39,983 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:39,983 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:59:02] 2025-10-12 20:58:40,194 | INFO     | [job] control thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,342 | INFO     | [data] control thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,578 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,766 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,843 | INFO     | [job] validate thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,859 | INFO     | [payload] control thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:40,954 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:41,026 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:41,280 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:41,320 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:41,440 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:44,058 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:49,882 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:59:02] 2025-10-12 20:58:50,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:59:02] 2025-10-12 20:58:55,022 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:59:02] 2025-10-12 20:58:57,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045532882752)>', '<ExcThread(monitor, started 140044446721792)>']
[2025-10-12 22:59:02] 2025-10-12 20:58:58,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:59:02] 2025-10-12 20:58:58,076 | INFO     | [monitor] control thread has ended
[2025-10-12 22:59:02] 2025-10-12 20:59:02,147 | INFO     | all workflow threads have been joined
[2025-10-12 22:59:02] 2025-10-12 20:59:02,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:59:02] 2025-10-12 20:59:02,149 | INFO     | traces error code: 0
[2025-10-12 22:59:02] 2025-10-12 20:59:02,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:59:02] 2025-10-12 20:59:02,217 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:59:02] 2025-10-12 20:59:02,221 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:59:02] 2025-10-12 20:59:02,224 [wrapper] pilotpid: 336688
[2025-10-12 22:59:02] 2025-10-12 20:59:02,228 [wrapper] Pilot exit status: 0
[2025-10-12 22:59:02] 2025-10-12 20:59:02,238 [wrapper] pandaids: 6839591902
[2025-10-12 22:59:02] 2025-10-12 20:59:02,259 [wrapper] cleanup supervisor_pilot  352970 336689
[2025-10-12 22:59:02] 2025-10-12 20:59:02,263 [wrapper] Test setup, not cleaning
[2025-10-12 22:59:02] 2025-10-12 20:59:02,266 [wrapper] apfmon messages muted
[2025-10-12 22:59:02] 2025-10-12 20:59:02,270 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:59:02] 2025-10-12 20:59:02,273 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:59:02]  *** Error codes and diagnostics ***
[2025-10-12 22:59:02]     "exeErrorCode": 0,
[2025-10-12 22:59:02]     "exeErrorDiag": "",
[2025-10-12 22:59:02]     "pilotErrorCode": 0,
[2025-10-12 22:59:02]     "pilotErrorDiag": "",
[2025-10-12 22:59:02]  *** Listing of results directory ***
[2025-10-12 22:59:02] total 409272
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:44 pilot3.tar.gz
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:45 queuedata.json
[2025-10-12 22:59:02] -rwx------ 1 boinc boinc     36292 Oct 12 08:45 runpilot2-wrapper.sh
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:59:02] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:47 run_atlas
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:47 job.xml
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc 220873095 Oct 12 21:47 EVNT.46676267._004523.pool.root.1
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc    569675 Oct 12 21:47 input.tar.gz
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:47 start_atlas.sh
[2025-10-12 22:59:02] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:47 shared
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:47 boinc_setup_complete
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc      6370 Oct 12 21:47 init_data.xml
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:47 boinc_lockfile
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:47 pandaJob.out
[2025-10-12 22:59:02] -rw------- 1 boinc boinc    975536 Oct 12 21:47 agis_schedconf.cvmfs.json
[2025-10-12 22:59:02] -rw------- 1 boinc boinc   1560580 Oct 12 21:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:59:02] drwx------ 5 boinc boinc      4096 Oct 12 21:47 pilot3
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc       530 Oct 12 22:58 boinc_task_state.xml
[2025-10-12 22:59:02] -rw------- 1 boinc boinc 192560807 Oct 12 22:58 HITS.46676269._073004.pool.root.1
[2025-10-12 22:59:02] -rw------- 1 boinc boinc        95 Oct 12 22:58 pilot_heartbeat.json
[2025-10-12 22:59:02] -rw------- 1 boinc boinc      1022 Oct 12 22:58 memory_monitor_summary.json
[2025-10-12 22:59:02] -rw------- 1 boinc boinc    256066 Oct 12 22:58 log.46676269._073004.job.log.tgz.1
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:58 boinc_mmap_file
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:58 wrapper_checkpoint.txt
[2025-10-12 22:59:02] -rw------- 1 boinc boinc      7772 Oct 12 22:58 heartbeat.json
[2025-10-12 22:59:02] -rw------- 1 boinc boinc      4628 Oct 12 22:59 pilotlog.txt
[2025-10-12 22:59:02] -rw------- 1 boinc boinc    630246 Oct 12 22:59 log.46676269._073004.job.log.1
[2025-10-12 22:59:02] -rw------- 1 boinc boinc       357 Oct 12 22:59 output.list
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:59 runtime_log
[2025-10-12 22:59:02] -rw------- 1 boinc boinc    901120 Oct 12 22:59 result.tar.gz
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc      8792 Oct 12 22:59 runtime_log.err
[2025-10-12 22:59:02] -rw------- 1 boinc boinc       661 Oct 12 22:59 SVINDmI14R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwviNDmrMfeun.diag
[2025-10-12 22:59:02] -rw-r--r-- 1 boinc boinc     11018 Oct 12 22:59 stderr.txt
[2025-10-12 22:59:02] HITS file was successfully produced:
[2025-10-12 22:59:02] -rw------- 1 boinc boinc 192560807 Oct 12 22:58 shared/HITS.pool.root.1
[2025-10-12 22:59:02]  *** Contents of shared directory: ***
[2025-10-12 22:59:02] total 405212
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc 220873095 Oct 12 21:47 ATLAS.root_0
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc    569675 Oct 12 21:47 input.tar.gz
[2025-10-12 22:59:02] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:47 start_atlas.sh
[2025-10-12 22:59:02] -rw------- 1 boinc boinc 192560807 Oct 12 22:58 HITS.pool.root.1
[2025-10-12 22:59:02] -rw------- 1 boinc boinc    901120 Oct 12 22:59 result.tar.gz
22:59:04 (332911): run_atlas exited; CPU time 15949.482547
22:59:04 (332911): called boinc_finish(0)

</stderr_txt>
]]>

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