Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:57:35 (15157): wrapper (7.7.26015): starting
04:57:35 (15157): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 04:57:35] Arguments: --nthreads 4
[2025-10-12 04:57:35] Threads: 4
[2025-10-12 04:57:35] Checking for CVMFS
[2025-10-12 04:57:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 04:57:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 04:57:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 04:57:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 04:57:35] 2.11.2.0 2433 38575 65952 151613 1 59 12634982 20275200 1 130560 0 18201668 99.988 1242684 54351 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 04:57:35] CVMFS is ok
[2025-10-12 04:57:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 04:57:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 04:57:35] Further information can be found at the LHC@home message board.
[2025-10-12 04:57:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 04:57:35] Checking for apptainer binary...
[2025-10-12 04:57:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 04:57:35] Running /usr/bin/apptainer --version
[2025-10-12 04:57:35] apptainer version 1.3.2-1.el7
[2025-10-12 04:57:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 04:57:35] c-205-33.aglt2.org
[2025-10-12 04:57:35] apptainer works
[2025-10-12 04:57:35] Set ATHENA_PROC_NUMBER=4
[2025-10-12 04:57:35] Set ATHENA_CORE_NUMBER=4
[2025-10-12 04:57:36] Starting ATLAS job with PandaID=6839591947
[2025-10-12 04:57:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:39:20]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:39:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839591947/log.46676269._073049.job.log.tgz.1
[2025-10-12 06:39:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/49/log.46676269._073049.job.log.tgz.1
[2025-10-12 06:39:20]  workdir=None
[2025-10-12 06:39:20] ]
[2025-10-12 06:39:20] 2025-10-12 10:38:44,590 | INFO     | transferring file log.46676269._073049.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839591947/log.46676269._073049.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 06:39:20] 2025-10-12 10:38:44,591 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839591947/log.46676269._073049.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._073049.job
[2025-10-12 06:39:20] 2025-10-12 10:38:44,601 | INFO     | adding to output.list: log.46676269._073049.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/49/log.46676269._073049.job.log.tg
[2025-10-12 06:39:20] 2025-10-12 10:38:44,601 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 06:39:20] 2025-10-12 10:38:44,602 | INFO     | summary of transferred files:
[2025-10-12 06:39:20] 2025-10-12 10:38:44,602 | INFO     |  -- lfn=log.46676269._073049.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:39:20] 2025-10-12 10:38:44,602 | INFO     | stage-out finished correctly
[2025-10-12 06:39:20] 2025-10-12 10:38:45,280 | INFO     | time since job start (6060s) is within the limit (172800.0s)
[2025-10-12 06:39:20] 2025-10-12 10:38:45,799 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:39:20] 2025-10-12 10:38:45,924 | INFO     | job 6839591947 has state=finished
[2025-10-12 06:39:20] 2025-10-12 10:38:45,924 | INFO     | preparing for final server update for job 6839591947 in state='finished'
[2025-10-12 06:39:20] 2025-10-12 10:38:45,925 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:39:20] 2025-10-12 10:38:45,925 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:39:20] 2025-10-12 10:38:45,926 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:39:20] 2025-10-12 10:38:45,926 | INFO     | job 6839591947 has finished - writing final server update
[2025-10-12 06:39:20] 2025-10-12 10:38:45,926 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:39:20] 2025-10-12 10:38:45,927 | INFO     | executing command: lscpu
[2025-10-12 06:39:20] 2025-10-12 10:38:45,957 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:39:20] 2025-10-12 10:38:47,285 | INFO     | time since job start (6062s) is within the limit (172800.0s)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,518 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 06:39:20] 2025-10-12 10:38:48,519 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3599.9092499999997
[2025-10-12 06:39:20] 2025-10-12 10:38:48,520 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839591947/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,520 | INFO     | extracted standard info from prmon json
[2025-10-12 06:39:20] 2025-10-12 10:38:48,520 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:39:20] 2025-10-12 10:38:48,520 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:39:20] 2025-10-12 10:38:48,520 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:39:20] 2025-10-12 10:38:48,520 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:39:20] 2025-10-12 10:38:48,521 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | sum of square deviations: 241429643.0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | sum of deviations: -7400801332.0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | mean x: 1760262565.5
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | mean y: 2386143.652173913
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | -- intersect: 53961599177.91135
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | intersect: 53961599177.91135
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | chi2: 0.08538492307021361
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | -- intersect: 53961599177.91135
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | current memory leak: -30.65 B/s (using 92 data points, chi2=0.09)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | could have reported an average CPU frequency of 2885 MHz (7 samples)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | ..............................
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | . Timing measurements:
[2025-10-12 06:39:20] 2025-10-12 10:38:48,522 | INFO     | . get job = 0 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | . initial setup = 2 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | . payload setup = 3 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | . stage-in = 0 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | . payload execution = 6038 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | . stage-out = 0 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | . log creation = 0 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,523 | INFO     | ..............................
[2025-10-12 06:39:20] 2025-10-12 10:38:48,641 | INFO     | 
[2025-10-12 06:39:20] 2025-10-12 10:38:48,641 | INFO     | job summary report
[2025-10-12 06:39:20] 2025-10-12 10:38:48,641 | INFO     | --------------------------------------------------
[2025-10-12 06:39:20] 2025-10-12 10:38:48,641 | INFO     | PanDA job id: 6839591947
[2025-10-12 06:39:20] 2025-10-12 10:38:48,642 | INFO     | task id: 46676269
[2025-10-12 06:39:20] 2025-10-12 10:38:48,642 | INFO     | errors: (none)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,642 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:39:20] 2025-10-12 10:38:48,642 | INFO     | pilot state: finished 
[2025-10-12 06:39:20] 2025-10-12 10:38:48,642 | INFO     | transexitcode: 0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,642 | INFO     | exeerrorcode: 0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,643 | INFO     | exeerrordiag: 
[2025-10-12 06:39:20] 2025-10-12 10:38:48,643 | INFO     | exitcode: 0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,643 | INFO     | exitmsg: OK
[2025-10-12 06:39:20] 2025-10-12 10:38:48,643 | INFO     | cpuconsumptiontime: 23378 s
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | nevents: 400
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | neventsw: 0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | pid: 25210
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | pgrp: 25210
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | corecount: 4
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | event service: False
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | sizes: {0: 2348856, 3: 2349118, 10: 2349146, 6045: 2376038, 6046: 2385036, 6047: 2385092, 6050: 2385414}
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | --------------------------------------------------
[2025-10-12 06:39:20] 2025-10-12 10:38:48,644 | INFO     | 
[2025-10-12 06:39:20] 2025-10-12 10:38:48,645 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,659 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,660 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,662 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,662 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,662 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:39:20] 2025-10-12 10:38:48,662 | INFO     | job 6839591947 has completed (purged errors)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,662 | INFO     | overall cleanup function is called
[2025-10-12 06:39:20] 2025-10-12 10:38:48,670 | WARNING  | process 25210 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 06:39:20] 2025-10-12 10:38:48,702 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,703 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,703 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 06:39:20] 2025-10-12 10:38:48,703 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 06:39:20] 2025-10-12 10:38:48,703 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-6839591947/payload.stdout) since it has not been created yet
[2025-10-12 06:39:20] 2025-10-12 10:38:48,703 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 06:39:20] 2025-10-12 10:38:48,713 | INFO     | sufficient remaining disk space (18582863872 B)
[2025-10-12 06:39:20] 2025-10-12 10:38:48,713 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-12 06:39:20] 2025-10-12 10:38:48,713 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6839591947/HITS.46676269._073049.pool.root.1 since it does not exist
[2025-10-12 06:39:20] 2025-10-12 10:38:48,744 | INFO     | number of running child processes to parent process 25210: 1
[2025-10-12 06:39:20] 2025-10-12 10:38:48,744 | INFO     | maximum number of monitored processes: 6
[2025-10-12 06:39:20] 2025-10-12 10:38:48,744 | INFO     | aborting job monitoring since job object (job id=6839591947) has expired
[2025-10-12 06:39:20] 2025-10-12 10:38:49,667 | INFO     | --- collectZombieJob: --- 10, [25210]
[2025-10-12 06:39:20] 2025-10-12 10:38:49,668 | INFO     | zombie collector waiting for pid 25210
[2025-10-12 06:39:20] 2025-10-12 10:38:49,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:39:20] 2025-10-12 10:38:49,668 | INFO     | collected zombie processes
[2025-10-12 06:39:20] 2025-10-12 10:38:49,668 | INFO     | will attempt to kill all subprocesses of pid=25210
[2025-10-12 06:39:20] 2025-10-12 10:38:49,701 | INFO     | process IDs to be killed: [25210] (in reverse order)
[2025-10-12 06:39:20] 2025-10-12 10:38:49,723 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:39:20] 2025-10-12 10:38:49,723 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:39:20] 2025-10-12 10:38:49,724 | INFO     | did not find any defunct processes belonging to 25210
[2025-10-12 06:39:20] 2025-10-12 10:38:49,725 | INFO     | did not find any defunct processes belonging to 25210
[2025-10-12 06:39:20] 2025-10-12 10:38:49,725 | INFO     | ready for new job
[2025-10-12 06:39:20] 2025-10-12 10:38:49,725 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:39:20] 2025-10-12 10:38:49,726 | INFO     | ***************************************
[2025-10-12 06:39:20] 2025-10-12 10:38:49,726 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:39:20] 2025-10-12 10:38:49,726 | INFO     | ***************************************
[2025-10-12 06:39:20] 2025-10-12 10:38:49,726 | INFO     | 
[2025-10-12 06:39:20] 2025-10-12 10:38:49,726 | INFO     | architecture information:
[2025-10-12 06:39:20] 2025-10-12 10:38:49,727 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:39:20] 2025-10-12 10:38:49,735 | INFO     | cat /etc/os-release:
[2025-10-12 06:39:20] NAME="CentOS Linux"
[2025-10-12 06:39:20] VERSION="7 (Core)"
[2025-10-12 06:39:20] ID="centos"
[2025-10-12 06:39:20] ID_LIKE="rhel fedora"
[2025-10-12 06:39:20] VERSION_ID="7"
[2025-10-12 06:39:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:39:20] ANSI_COLOR="0;31"
[2025-10-12 06:39:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:39:20] HOME_URL="https://www.centos.org/"
[2025-10-12 06:39:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:39:20] 
[2025-10-12 06:39:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:39:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:39:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:39:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:39:20] 
[2025-10-12 06:39:20] 2025-10-12 10:38:49,735 | INFO     | ***************************************
[2025-10-12 06:39:20] 2025-10-12 10:38:50,238 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 06:39:20] 2025-10-12 10:38:50,262 | INFO     | sufficient remaining disk space (18582863872 B)
[2025-10-12 06:39:20] 2025-10-12 10:38:50,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:39:20] 2025-10-12 10:38:50,264 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:39:20] 2025-10-12 10:38:50,264 | INFO     | update_server=False
[2025-10-12 06:39:20] 2025-10-12 10:38:50,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:39:20] 2025-10-12 10:38:50,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:39:20] 2025-10-12 10:38:50,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:39:20] 2025-10-12 10:38:50,265 | INFO     | aborting loop
[2025-10-12 06:39:20] 2025-10-12 10:38:50,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:39:20] 2025-10-12 10:38:50,669 | INFO     | all data control threads have been joined
[2025-10-12 06:39:20] 2025-10-12 10:38:50,863 | INFO     | all payload control threads have been joined
[2025-10-12 06:39:20] 2025-10-12 10:38:50,985 | INFO     | all job control threads have been joined
[2025-10-12 06:39:20] 2025-10-12 10:38:51,269 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,271 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,272 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,289 | INFO     | [job] validate thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,294 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,299 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,389 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,572 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,674 | INFO     | [data] control thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:39:20] 2025-10-12 10:38:51,867 | INFO     | [payload] control thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:51,991 | INFO     | [job] control thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:52,270 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:52,458 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:52,490 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:38:54,786 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:39:20] 2025-10-12 10:38:55,847 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:39:01,016 | INFO     | job.realtimelogging is not enabled
[2025-10-12 06:39:20] 2025-10-12 10:39:02,021 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:39:20] 2025-10-12 10:39:03,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284915865408)>', '<ExcThread(monitor, started 140284478342912)>']
[2025-10-12 06:39:20] 2025-10-12 10:39:08,724 | INFO     | all workflow threads have been joined
[2025-10-12 06:39:20] 2025-10-12 10:39:08,725 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:39:20] 2025-10-12 10:39:08,725 | INFO     | traces error code: 0
[2025-10-12 06:39:20] 2025-10-12 10:39:08,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:39:20] 2025-10-12 10:39:20,413 | INFO     | PID=18805 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 06:39:20] 2025-10-12 10:39:20,413 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:39:20] 2025-10-12 10:39:20,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:39:20] 2025-10-12 10:39:20,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:39:20] 2025-10-12 10:39:20,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:39:20] 2025-10-12 10:39:20,413 | INFO     | [monitor] control thread has ended
[2025-10-12 06:39:20] 2025-10-12 10:39:20,498 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:39:20] 2025-10-12 10:39:20,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:39:20] 2025-10-12 10:39:20,530 [wrapper] pilotpid: 18805
[2025-10-12 06:39:20] 2025-10-12 10:39:20,537 [wrapper] Pilot exit status: 0
[2025-10-12 06:39:20] 2025-10-12 10:39:20,558 [wrapper] pandaids: 6839591947
[2025-10-12 06:39:20] 2025-10-12 10:39:20,606 [wrapper] cleanup supervisor_pilot 24441 18806
[2025-10-12 06:39:20] 2025-10-12 10:39:20,609 [wrapper] Test setup, not cleaning
[2025-10-12 06:39:20] 2025-10-12 10:39:20,612 [wrapper] apfmon messages muted
[2025-10-12 06:39:20] 2025-10-12 10:39:20,615 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:39:20] 2025-10-12 10:39:20,618 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:39:20]  *** Error codes and diagnostics ***
[2025-10-12 06:39:20]     "exeErrorCode": 0,
[2025-10-12 06:39:20]     "exeErrorDiag": "",
[2025-10-12 06:39:20]     "pilotErrorCode": 0,
[2025-10-12 06:39:20]     "pilotErrorDiag": "",
[2025-10-12 06:39:20]  *** Listing of results directory ***
[2025-10-12 06:39:20] total 413612
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:14 pilot3.tar.gz
[2025-10-12 06:39:20] -rwx------ 1 boincer umatlas     36292 Oct 12 02:43 runpilot2-wrapper.sh
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 02:43 queuedata.json
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas       100 Oct 12 04:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:39:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 04:57 run_atlas
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas       105 Oct 12 04:57 job.xml
[2025-10-12 06:39:20] -rw-r--r-- 2 boincer umatlas 219311979 Oct 12 04:57 EVNT.46676267._004525.pool.root.1
[2025-10-12 06:39:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:57 start_atlas.sh
[2025-10-12 06:39:20] drwxrwx--x 2 boincer umatlas      4096 Oct 12 04:57 shared
[2025-10-12 06:39:20] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 04:57 input.tar.gz
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas         0 Oct 12 04:57 boinc_lockfile
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 04:57 pandaJob.out
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas    975520 Oct 12 04:57 agis_schedconf.cvmfs.json
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas   1560580 Oct 12 04:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:39:20] drwx------ 5 boincer umatlas      4096 Oct 12 04:57 pilot3
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas      6239 Oct 12 06:37 init_data.xml
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas 198032366 Oct 12 06:38 HITS.46676269._073049.pool.root.1
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas        95 Oct 12 06:38 pilot_heartbeat.json
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas       529 Oct 12 06:38 boinc_task_state.xml
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas      1044 Oct 12 06:38 memory_monitor_summary.json
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas    280303 Oct 12 06:38 log.46676269._073049.job.log.tgz.1
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas      7829 Oct 12 06:38 heartbeat.json
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 06:39 boinc_mmap_file
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas        27 Oct 12 06:39 wrapper_checkpoint.txt
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas       745 Oct 12 06:39 pilotlog.txt
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas    870060 Oct 12 06:39 log.46676269._073049.job.log.1
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas       357 Oct 12 06:39 output.list
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas       620 Oct 12 06:39 runtime_log
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas   1167360 Oct 12 06:39 result.tar.gz
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 06:39 runtime_log.err
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas       656 Oct 12 06:39 pWLKDmqy4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZOTMDmoh5ADo.diag
[2025-10-12 06:39:20] -rw-r--r-- 1 boincer umatlas     22368 Oct 12 06:39 stderr.txt
[2025-10-12 06:39:20] HITS file was successfully produced:
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas 198032366 Oct 12 06:38 shared/HITS.pool.root.1
[2025-10-12 06:39:20]  *** Contents of shared directory: ***
[2025-10-12 06:39:20] total 409284
[2025-10-12 06:39:20] -rw-r--r-- 2 boincer umatlas 219311979 Oct 12 04:57 ATLAS.root_0
[2025-10-12 06:39:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 04:57 start_atlas.sh
[2025-10-12 06:39:20] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 04:57 input.tar.gz
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas 198032366 Oct 12 06:38 HITS.pool.root.1
[2025-10-12 06:39:20] -rw------- 1 boincer umatlas   1167360 Oct 12 06:39 result.tar.gz
06:39:21 (15157): run_atlas exited; CPU time 23399.244848
06:39:21 (15157): called boinc_finish(0)

</stderr_txt>
]]>

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