Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:12:11 (996742): wrapper (7.7.26015): starting
05:12:11 (996742): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 05:12:11] Arguments: --nthreads 11
[2025-10-12 05:12:11] Threads: 11
[2025-10-12 05:12:11] Checking for CVMFS
[2025-10-12 05:12:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 05:12:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 05:12:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 05:12:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 05:12:14] 2.13.2.0 7534 77141 140960 151613 0 988 33715859 40960001 32220 16776704 0 463205434 99.774 264532662 44658 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 05:12:14] CVMFS is ok
[2025-10-12 05:12:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 05:12:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 05:12:14] Further information can be found at the LHC@home message board.
[2025-10-12 05:12:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 05:12:14] Checking for apptainer binary...
[2025-10-12 05:12:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 05:12:14] Running /usr/bin/apptainer --version
[2025-10-12 05:12:14] apptainer version 1.4.3-1.el9
[2025-10-12 05:12:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 05:12:15] c-208-39.aglt2.org
[2025-10-12 05:12:15] apptainer works
[2025-10-12 05:12:15] Set ATHENA_PROC_NUMBER=11
[2025-10-12 05:12:15] Set ATHENA_CORE_NUMBER=11
[2025-10-12 05:12:15] Starting ATLAS job with PandaID=6839386633
[2025-10-12 05:12:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:25:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:25:19] 2025-10-12 10:24:26,441 | INFO     | summary of transferred files:
[2025-10-12 06:25:19] 2025-10-12 10:24:26,441 | INFO     |  -- lfn=log.46676269._070929.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 06:25:19] 2025-10-12 10:24:26,441 | INFO     | stage-out finished correctly
[2025-10-12 06:25:19] 2025-10-12 10:24:26,593 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 06:25:19] 2025-10-12 10:24:26,760 | INFO     | time since job start (4281s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:28,156 | INFO     | monitor loop #301: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:28,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:28,600 | INFO     | job 6839386633 has state=finished
[2025-10-12 06:25:19] 2025-10-12 10:24:28,600 | INFO     | preparing for final server update for job 6839386633 in state='finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:28,600 | INFO     | this job has now completed (state=finished)
[2025-10-12 06:25:19] 2025-10-12 10:24:28,600 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 06:25:19] 2025-10-12 10:24:28,600 | INFO     | log transfer has been attempted: DONE
[2025-10-12 06:25:19] 2025-10-12 10:24:28,600 | INFO     | job 6839386633 has finished - writing final server update
[2025-10-12 06:25:19] 2025-10-12 10:24:28,601 | INFO     | total number of processed events: 400 (read)
[2025-10-12 06:25:19] 2025-10-12 10:24:28,612 | INFO     | executing command: lscpu
[2025-10-12 06:25:19] 2025-10-12 10:24:28,773 | INFO     | time since job start (4283s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:28,864 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 06:25:19] 2025-10-12 10:24:30,661 | INFO     | monitor loop #302: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:30,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:30,788 | INFO     | time since job start (4285s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:32,794 | INFO     | time since job start (4287s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:33,166 | INFO     | monitor loop #303: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:33,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:34,804 | INFO     | time since job start (4289s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:35,671 | INFO     | monitor loop #304: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:35,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:36,810 | INFO     | time since job start (4291s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:38,176 | INFO     | monitor loop #305: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:38,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:38,817 | INFO     | time since job start (4293s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:40,683 | INFO     | monitor loop #306: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:40,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:40,824 | INFO     | time since job start (4295s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:42,831 | INFO     | time since job start (4297s) is within the limit (172800.0s)
[2025-10-12 06:25:19] 2025-10-12 10:24:43,187 | INFO     | monitor loop #307: job 0:6839386633 is in state 'finished'
[2025-10-12 06:25:19] 2025-10-12 10:24:43,189 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,606 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 06:25:19] 2025-10-12 10:24:44,615 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3757.1543515624994
[2025-10-12 06:25:19] 2025-10-12 10:24:44,638 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839386633/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,641 | INFO     | extracted standard info from prmon json
[2025-10-12 06:25:19] 2025-10-12 10:24:44,641 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:25:19] 2025-10-12 10:24:44,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:25:19] 2025-10-12 10:24:44,641 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:25:19] 2025-10-12 10:24:44,641 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:25:19] 2025-10-12 10:24:44,642 | INFO     | fitting pss+swap vs Time
[2025-10-12 06:25:19] 2025-10-12 10:24:44,642 | INFO     | sum of square deviations: 73883601.09677407
[2025-10-12 06:25:19] 2025-10-12 10:24:44,642 | INFO     | sum of deviations: 6413020565.870966
[2025-10-12 06:25:19] 2025-10-12 10:24:44,642 | INFO     | mean x: 1760262666.580645
[2025-10-12 06:25:19] 2025-10-12 10:24:44,642 | INFO     | mean y: 2597060.7258064514
[2025-10-12 06:25:19] 2025-10-12 10:24:44,642 | INFO     | -- intersect: -152786391490.74628
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | intersect: -152786391490.74628
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | chi2: 0.26640379211612863
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | -- intersect: -152786391490.74628
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | current memory leak: 86.80 B/s (using 62 data points, chi2=0.27)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | could have reported an average CPU frequency of 3724 MHz (6 samples)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | ..............................
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . Timing measurements:
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . get job = 0 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . initial setup = 4 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . payload setup = 44 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . stage-in = 0 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . payload execution = 4189 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . stage-out = 0 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | . log creation = 0 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,643 | INFO     | ..............................
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | 
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | job summary report
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | --------------------------------------------------
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | PanDA job id: 6839386633
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | task id: 46676269
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | errors: (none)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | pilot state: finished 
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | transexitcode: 0
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | exeerrorcode: 0
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | exeerrordiag: 
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | exitcode: 0
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | exitmsg: OK
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | cpuconsumptiontime: 23927 s
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | nevents: 400
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | neventsw: 0
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | pid: 1012225
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | pgrp: 1012225
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | corecount: 11
[2025-10-12 06:25:19] 2025-10-12 10:24:44,768 | INFO     | event service: False
[2025-10-12 06:25:19] 2025-10-12 10:24:44,769 | INFO     | sizes: {0: 2348855, 11: 2348855, 19: 2349145, 22: 2349173, 4238: 2375309, 4239: 2384491, 4257: 2384629}
[2025-10-12 06:25:19] 2025-10-12 10:24:44,769 | INFO     | --------------------------------------------------
[2025-10-12 06:25:19] 2025-10-12 10:24:44,769 | INFO     | 
[2025-10-12 06:25:19] 2025-10-12 10:24:44,769 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | job 6839386633 has completed (purged errors)
[2025-10-12 06:25:19] 2025-10-12 10:24:44,804 | INFO     | overall cleanup function is called
[2025-10-12 06:25:19] 2025-10-12 10:24:45,813 | INFO     | --- collectZombieJob: --- 10, [1012225]
[2025-10-12 06:25:19] 2025-10-12 10:24:45,813 | INFO     | zombie collector waiting for pid 1012225
[2025-10-12 06:25:19] 2025-10-12 10:24:45,813 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:25:19] 2025-10-12 10:24:45,813 | INFO     | collected zombie processes
[2025-10-12 06:25:19] 2025-10-12 10:24:45,813 | INFO     | will attempt to kill all subprocesses of pid=1012225
[2025-10-12 06:25:19] 2025-10-12 10:24:46,333 | INFO     | process IDs to be killed: [1012225] (in reverse order)
[2025-10-12 06:25:19] 2025-10-12 10:24:46,496 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:25:19] 2025-10-12 10:24:46,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:25:19] 2025-10-12 10:24:46,582 | INFO     | did not find any defunct processes belonging to 1012225
[2025-10-12 06:25:19] 2025-10-12 10:24:46,686 | INFO     | did not find any defunct processes belonging to 1012225
[2025-10-12 06:25:19] 2025-10-12 10:24:46,687 | INFO     | ready for new job
[2025-10-12 06:25:19] 2025-10-12 10:24:46,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:25:19] 2025-10-12 10:24:46,688 | INFO     | ***************************************
[2025-10-12 06:25:19] 2025-10-12 10:24:46,688 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:25:19] 2025-10-12 10:24:46,688 | INFO     | ***************************************
[2025-10-12 06:25:19] 2025-10-12 10:24:46,688 | INFO     | 
[2025-10-12 06:25:19] 2025-10-12 10:24:46,697 | INFO     | architecture information:
[2025-10-12 06:25:19] 2025-10-12 10:24:46,701 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:25:19] 2025-10-12 10:24:46,758 | INFO     | cat /etc/os-release:
[2025-10-12 06:25:19] NAME="CentOS Linux"
[2025-10-12 06:25:19] VERSION="7 (Core)"
[2025-10-12 06:25:19] ID="centos"
[2025-10-12 06:25:19] ID_LIKE="rhel fedora"
[2025-10-12 06:25:19] VERSION_ID="7"
[2025-10-12 06:25:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:25:19] ANSI_COLOR="0;31"
[2025-10-12 06:25:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:25:19] HOME_URL="https://www.centos.org/"
[2025-10-12 06:25:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:25:19] 
[2025-10-12 06:25:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:25:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:25:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:25:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:25:19] 
[2025-10-12 06:25:19] 2025-10-12 10:24:46,758 | INFO     | ***************************************
[2025-10-12 06:25:19] 2025-10-12 10:24:47,262 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 06:25:19] 2025-10-12 10:24:47,280 | INFO     | sufficient remaining disk space (170105241600 B)
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | INFO     | update_server=False
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | INFO     | aborting loop
[2025-10-12 06:25:19] 2025-10-12 10:24:47,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:25:19] 2025-10-12 10:24:47,696 | INFO     | all payload control threads have been joined
[2025-10-12 06:25:19] 2025-10-12 10:24:48,143 | INFO     | all data control threads have been joined
[2025-10-12 06:25:19] 2025-10-12 10:24:48,286 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:48,287 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:48,555 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:48,671 | INFO     | all job control threads have been joined
[2025-10-12 06:25:19] 2025-10-12 10:24:48,681 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:48,702 | INFO     | [payload] control thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:48,706 | INFO     | [job] validate thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,050 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,119 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,148 | INFO     | [data] control thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,288 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,498 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,677 | INFO     | [job] control thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,705 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:49,752 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:25:19] 2025-10-12 10:24:50,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:25:19] 2025-10-12 10:24:50,770 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:24:54,734 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:25:19] 2025-10-12 10:25:12,076 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:25:19] 2025-10-12 10:25:13,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819499657024)>', '<ExcThread(monitor, started 139819153872640)>']
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | INFO     | PID=1003493 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | INFO     | .. there are 30 such processes running
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:25:19] 2025-10-12 10:25:16,398 | INFO     | [monitor] control thread has ended
[2025-10-12 06:25:19] 2025-10-12 10:25:18,110 | INFO     | all workflow threads have been joined
[2025-10-12 06:25:19] 2025-10-12 10:25:18,111 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:25:19] 2025-10-12 10:25:18,111 | INFO     | traces error code: 0
[2025-10-12 06:25:19] 2025-10-12 10:25:18,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:25:19] 2025-10-12 10:25:18,492 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:25:19] 2025-10-12 10:25:18,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:25:19] 2025-10-12 10:25:18,547 [wrapper] pilotpid: 1003493
[2025-10-12 06:25:19] 2025-10-12 10:25:18,565 [wrapper] Pilot exit status: 0
[2025-10-12 06:25:19] 2025-10-12 10:25:18,704 [wrapper] pandaids: 6839386633
[2025-10-12 06:25:19] 2025-10-12 10:25:18,895 [wrapper] cleanup supervisor_pilot 1172685 1003494
[2025-10-12 06:25:19] 2025-10-12 10:25:18,908 [wrapper] Test setup, not cleaning
[2025-10-12 06:25:19] 2025-10-12 10:25:18,926 [wrapper] apfmon messages muted
[2025-10-12 06:25:19] 2025-10-12 10:25:18,960 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:25:19] 2025-10-12 10:25:18,984 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:25:19]  *** Error codes and diagnostics ***
[2025-10-12 06:25:19]     "exeErrorCode": 0,
[2025-10-12 06:25:19]     "exeErrorDiag": "",
[2025-10-12 06:25:19]     "pilotErrorCode": 0,
[2025-10-12 06:25:19]     "pilotErrorDiag": "",
[2025-10-12 06:25:19]  *** Listing of results directory ***
[2025-10-12 06:25:19] total 409304
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 00:11 pilot3.tar.gz
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 00:14 queuedata.json
[2025-10-12 06:25:19] -rwx------. 1 boincer umatlas     36292 Oct 12 00:15 runpilot2-wrapper.sh
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas       100 Oct 12 05:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:25:19] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 05:12 run_atlas
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas       105 Oct 12 05:12 job.xml
[2025-10-12 06:25:19] -rw-r--r--. 2 boincer umatlas 219943072 Oct 12 05:12 EVNT.46676267._003278.pool.root.1
[2025-10-12 06:25:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:12 start_atlas.sh
[2025-10-12 06:25:19] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 05:12 shared
[2025-10-12 06:25:19] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 05:12 input.tar.gz
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas         0 Oct 12 05:12 boinc_lockfile
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 05:12 pandaJob.out
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas    975520 Oct 12 05:13 agis_schedconf.cvmfs.json
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas   1560580 Oct 12 05:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:25:19] drwx------. 5 boincer umatlas      4096 Oct 12 05:13 pilot3
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 06:21 init_data.xml
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas 193347793 Oct 12 06:23 HITS.46676269._070929.pool.root.1
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas       530 Oct 12 06:23 boinc_task_state.xml
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas      1047 Oct 12 06:24 memory_monitor_summary.json
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas        95 Oct 12 06:24 pilot_heartbeat.json
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas    354469 Oct 12 06:24 log.46676269._070929.job.log.tgz.1
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas      7806 Oct 12 06:24 heartbeat.json
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas      4825 Oct 12 06:25 pilotlog.txt
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 06:25 boinc_mmap_file
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas    609612 Oct 12 06:25 log.46676269._070929.job.log.1
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas        27 Oct 12 06:25 wrapper_checkpoint.txt
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas       357 Oct 12 06:25 output.list
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas       620 Oct 12 06:25 runtime_log
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas    983040 Oct 12 06:25 result.tar.gz
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 06:25 runtime_log.err
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas       658 Oct 12 06:25 IUWNDmIf2R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDCTMDmKl2brn.diag
[2025-10-12 06:25:19] -rw-r--r--. 1 boincer umatlas     22158 Oct 12 06:25 stderr.txt
[2025-10-12 06:25:19] HITS file was successfully produced:
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas 193347793 Oct 12 06:23 shared/HITS.pool.root.1
[2025-10-12 06:25:19]  *** Contents of shared directory: ***
[2025-10-12 06:25:19] total 405156
[2025-10-12 06:25:19] -rw-r--r--. 2 boincer umatlas 219943072 Oct 12 05:12 ATLAS.root_0
[2025-10-12 06:25:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 05:12 start_atlas.sh
[2025-10-12 06:25:19] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 05:12 input.tar.gz
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas 193347793 Oct 12 06:23 HITS.pool.root.1
[2025-10-12 06:25:19] -rw-------. 1 boincer umatlas    983040 Oct 12 06:25 result.tar.gz
06:25:21 (996742): run_atlas exited; CPU time 24035.661664
06:25:21 (996742): called boinc_finish(0)

</stderr_txt>
]]>

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