Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:57:28 (3608910): wrapper (7.7.26015): starting
19:57:28 (3608910): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 19:57:28] Arguments: --nthreads 6
[2025-10-12 19:57:28] Threads: 6
[2025-10-12 19:57:28] Checking for CVMFS
[2025-10-12 19:57:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:57:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:57:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:57:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:57:29] 2.11.5.0 3651556 4208 72632 151617 1 188 38694534 52428800 1858 130560 0 13111789 99.998 142064 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 19:57:29] CVMFS is ok
[2025-10-12 19:57:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:57:29] Checking for apptainer binary...
[2025-10-12 19:57:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:57:29] Running /usr/bin/apptainer --version
[2025-10-12 19:57:29] apptainer version 1.3.5-1.el9
[2025-10-12 19:57:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:57:29] testio008
[2025-10-12 19:57:29] apptainer works
[2025-10-12 19:57:29] Set ATHENA_PROC_NUMBER=6
[2025-10-12 19:57:29] Set ATHENA_CORE_NUMBER=6
[2025-10-12 19:57:29] Starting ATLAS job with PandaID=6839591640
[2025-10-12 19:57:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:11:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:11:01]  protocol_id=None
[2025-10-12 21:11:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 21:11:01]  replicas=None
[2025-10-12 21:11:01]  scope=mc23_13p6TeV
[2025-10-12 21:11:01]  status=None
[2025-10-12 21:11:01]  status_code=0
[2025-10-12 21:11:01]  storage_token=
[2025-10-12 21:11:01]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6839591640/log.46676269._072904.job.log.tgz.1
[2025-10-12 21:11:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/a6/log.46676269._072904.job.log.tgz.1
[2025-10-12 21:11:01]  workdir=None
[2025-10-12 21:11:01] ]
[2025-10-12 21:11:01] 2025-10-12 12:10:26,150 | INFO     | transferring file log.46676269._072904.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6839591640/log.46676269._072904.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 21:11:01] 2025-10-12 12:10:26,150 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6839591640/log.46676269._072904.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._072904.job
[2025-10-12 21:11:01] 2025-10-12 12:10:26,158 | INFO     | adding to output.list: log.46676269._072904.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/a6/log.46676269._072904.job.log.tg
[2025-10-12 21:11:01] 2025-10-12 12:10:26,158 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:11:01] 2025-10-12 12:10:26,158 | INFO     | summary of transferred files:
[2025-10-12 21:11:01] 2025-10-12 12:10:26,158 | INFO     |  -- lfn=log.46676269._072904.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:11:01] 2025-10-12 12:10:26,159 | INFO     | stage-out finished correctly
[2025-10-12 21:11:01] 2025-10-12 12:10:26,202 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:11:01] 2025-10-12 12:10:26,235 | INFO     | time since job start (4369s) is within the limit (172800.0s)
[2025-10-12 21:11:01] 2025-10-12 12:10:26,889 | INFO     | monitor loop #325: job 0:6839591640 is in state 'finished'
[2025-10-12 21:11:01] 2025-10-12 12:10:26,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:11:01] 2025-10-12 12:10:27,809 | INFO     | job 6839591640 has state=finished
[2025-10-12 21:11:01] 2025-10-12 12:10:27,809 | INFO     | preparing for final server update for job 6839591640 in state='finished'
[2025-10-12 21:11:01] 2025-10-12 12:10:27,810 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:11:01] 2025-10-12 12:10:27,810 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:11:01] 2025-10-12 12:10:27,810 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:11:01] 2025-10-12 12:10:27,810 | INFO     | job 6839591640 has finished - writing final server update
[2025-10-12 21:11:01] 2025-10-12 12:10:27,810 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:11:01] 2025-10-12 12:10:27,810 | INFO     | executing command: lscpu
[2025-10-12 21:11:01] 2025-10-12 12:10:27,821 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:11:01] 2025-10-12 12:10:28,248 | INFO     | time since job start (4371s) is within the limit (172800.0s)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,301 | INFO     | PID=3612692 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:11:01] 2025-10-12 12:10:29,301 | INFO     | .. there are 3 such processes running
[2025-10-12 21:11:01] 2025-10-12 12:10:29,391 | INFO     | monitor loop #326: job 0:6839591640 is in state 'finished'
[2025-10-12 21:11:01] 2025-10-12 12:10:29,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,471 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:11:01] 2025-10-12 12:10:29,473 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4095.7100999999993
[2025-10-12 21:11:01] 2025-10-12 12:10:29,474 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6839591640/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,475 | INFO     | extracted standard info from prmon json
[2025-10-12 21:11:01] 2025-10-12 12:10:29,475 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:11:01] 2025-10-12 12:10:29,475 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:11:01] 2025-10-12 12:10:29,475 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:11:01] 2025-10-12 12:10:29,475 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | sum of deviations: 910058999.9999998
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | mean x: 1760268932.0
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | mean y: 2430553.5076923077
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | -- intersect: -18813811132.629528
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | intersect: -18813811132.629528
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | chi2: 0.027818882709917978
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | -- intersect: -18813811132.629528
[2025-10-12 21:11:01] 2025-10-12 12:10:29,476 | INFO     | current memory leak: 10.69 B/s (using 65 data points, chi2=0.03)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | could have reported an average CPU frequency of 3365 MHz (6 samples)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | ..............................
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . Timing measurements:
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . get job = 0 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . initial setup = 4 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . payload setup = 2 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . stage-in = 0 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . payload execution = 4348 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . stage-out = 0 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | . log creation = 0 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,477 | INFO     | ..............................
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | 
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | job summary report
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | --------------------------------------------------
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | PanDA job id: 6839591640
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | task id: 46676269
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | errors: (none)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | pilot state: finished 
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | transexitcode: 0
[2025-10-12 21:11:01] 2025-10-12 12:10:29,747 | INFO     | exeerrorcode: 0
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | exeerrordiag: 
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | exitcode: 0
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | exitmsg: OK
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | cpuconsumptiontime: 22732 s
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | nevents: 400
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | neventsw: 0
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | pid: 3619404
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | pgrp: 3619404
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | corecount: 6
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | event service: False
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | sizes: {0: 2348806, 3: 2349068, 11: 2349096, 4354: 2375204, 4356: 2384258, 4359: 2384396}
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | --------------------------------------------------
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | 
[2025-10-12 21:11:01] 2025-10-12 12:10:29,748 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | job 6839591640 has completed (purged errors)
[2025-10-12 21:11:01] 2025-10-12 12:10:29,757 | INFO     | overall cleanup function is called
[2025-10-12 21:11:01] 2025-10-12 12:10:30,763 | INFO     | --- collectZombieJob: --- 10, [3619404]
[2025-10-12 21:11:01] 2025-10-12 12:10:30,763 | INFO     | zombie collector waiting for pid 3619404
[2025-10-12 21:11:01] 2025-10-12 12:10:30,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:11:01] 2025-10-12 12:10:30,763 | INFO     | collected zombie processes
[2025-10-12 21:11:01] 2025-10-12 12:10:30,763 | INFO     | will attempt to kill all subprocesses of pid=3619404
[2025-10-12 21:11:01] 2025-10-12 12:10:30,798 | INFO     | process IDs to be killed: [3619404] (in reverse order)
[2025-10-12 21:11:01] 2025-10-12 12:10:30,819 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:11:01] 2025-10-12 12:10:30,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:11:01] 2025-10-12 12:10:30,821 | INFO     | did not find any defunct processes belonging to 3619404
[2025-10-12 21:11:01] 2025-10-12 12:10:30,822 | INFO     | did not find any defunct processes belonging to 3619404
[2025-10-12 21:11:01] 2025-10-12 12:10:30,822 | INFO     | ready for new job
[2025-10-12 21:11:01] 2025-10-12 12:10:30,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:11:01] 2025-10-12 12:10:30,823 | INFO     | ***************************************
[2025-10-12 21:11:01] 2025-10-12 12:10:30,823 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:11:01] 2025-10-12 12:10:30,823 | INFO     | ***************************************
[2025-10-12 21:11:01] 2025-10-12 12:10:30,823 | INFO     | 
[2025-10-12 21:11:01] 2025-10-12 12:10:30,824 | INFO     | architecture information:
[2025-10-12 21:11:01] 2025-10-12 12:10:30,824 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:11:01] 2025-10-12 12:10:30,830 | INFO     | cat /etc/os-release:
[2025-10-12 21:11:01] NAME="CentOS Linux"
[2025-10-12 21:11:01] VERSION="7 (Core)"
[2025-10-12 21:11:01] ID="centos"
[2025-10-12 21:11:01] ID_LIKE="rhel fedora"
[2025-10-12 21:11:01] VERSION_ID="7"
[2025-10-12 21:11:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:11:01] ANSI_COLOR="0;31"
[2025-10-12 21:11:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:11:01] HOME_URL="https://www.centos.org/"
[2025-10-12 21:11:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:11:01] 
[2025-10-12 21:11:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:11:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:11:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:11:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:11:01] 
[2025-10-12 21:11:01] 2025-10-12 12:10:30,830 | INFO     | ***************************************
[2025-10-12 21:11:01] 2025-10-12 12:10:31,333 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | INFO     | sufficient remaining disk space (280083038208 B)
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | INFO     | update_server=False
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:11:01] 2025-10-12 12:10:31,340 | INFO     | aborting loop
[2025-10-12 21:11:01] 2025-10-12 12:10:31,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:11:01] 2025-10-12 12:10:31,763 | INFO     | all data control threads have been joined
[2025-10-12 21:11:01] 2025-10-12 12:10:31,965 | INFO     | all payload control threads have been joined
[2025-10-12 21:11:01] 2025-10-12 12:10:32,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:11:01] 2025-10-12 12:10:32,344 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:32,345 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:32,345 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:32,471 | INFO     | all job control threads have been joined
[2025-10-12 21:11:01] 2025-10-12 12:10:32,533 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:32,546 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:32,769 | INFO     | [data] control thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:32,971 | INFO     | [payload] control thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,133 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,468 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,476 | INFO     | [job] control thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,666 | INFO     | [job] validate thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,712 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,736 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,784 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:33,831 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:36,253 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:11:01] 2025-10-12 12:10:44,089 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:11:01] 2025-10-12 12:10:45,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532182705984)>', '<ExcThread(monitor, started 140531690612480)>']
[2025-10-12 21:11:01] 2025-10-12 12:10:50,259 | INFO     | all workflow threads have been joined
[2025-10-12 21:11:01] 2025-10-12 12:10:50,259 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:11:01] 2025-10-12 12:10:50,259 | INFO     | traces error code: 0
[2025-10-12 21:11:01] 2025-10-12 12:10:50,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:11:01] 2025-10-12 12:11:01,386 | INFO     | PID=3612692 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:11:01] 2025-10-12 12:11:01,386 | INFO     | .. there are 3 such processes running
[2025-10-12 21:11:01] 2025-10-12 12:11:01,387 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:11:01] 2025-10-12 12:11:01,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:11:01] 2025-10-12 12:11:01,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:11:01] 2025-10-12 12:11:01,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:11:01] 2025-10-12 12:11:01,387 | INFO     | [monitor] control thread has ended
[2025-10-12 21:11:01] 2025-10-12 12:11:01,442 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:11:01] 2025-10-12 12:11:01,443 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:11:01] 2025-10-12 12:11:01,444 [wrapper] pilotpid: 3612692
[2025-10-12 21:11:01] 2025-10-12 12:11:01,445 [wrapper] Pilot exit status: 0
[2025-10-12 21:11:01] 2025-10-12 12:11:01,449 [wrapper] pandaids: 6839591640
[2025-10-12 21:11:01] 2025-10-12 12:11:01,460 [wrapper] cleanup supervisor_pilot 3677121 3612693
[2025-10-12 21:11:01] 2025-10-12 12:11:01,461 [wrapper] Test setup, not cleaning
[2025-10-12 21:11:01] 2025-10-12 12:11:01,462 [wrapper] apfmon messages muted
[2025-10-12 21:11:01] 2025-10-12 12:11:01,463 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:11:01] 2025-10-12 12:11:01,464 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:11:01]  *** Error codes and diagnostics ***
[2025-10-12 21:11:01]     "exeErrorCode": 0,
[2025-10-12 21:11:01]     "exeErrorDiag": "",
[2025-10-12 21:11:01]     "pilotErrorCode": 0,
[2025-10-12 21:11:01]     "pilotErrorDiag": "",
[2025-10-12 21:11:01]  *** Listing of results directory ***
[2025-10-12 21:11:01] total 418076
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc    557409 Oct 12 15:14 pilot3.tar.gz
[2025-10-12 21:11:01] -rwx------. 1 boinc boinc     36292 Oct 12 15:41 runpilot2-wrapper.sh
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc      5112 Oct 12 15:41 queuedata.json
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc       100 Oct 12 19:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:11:01] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 19:57 run_atlas
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc       105 Oct 12 19:57 job.xml
[2025-10-12 21:11:01] -rw-r--r--. 2 boinc boinc 220931728 Oct 12 19:57 EVNT.46676267._004519.pool.root.1
[2025-10-12 21:11:01] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:57 start_atlas.sh
[2025-10-12 21:11:01] drwxrwx--x. 2 boinc boinc        68 Oct 12 19:57 shared
[2025-10-12 21:11:01] -rw-r--r--. 2 boinc boinc    569675 Oct 12 19:57 input.tar.gz
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc         0 Oct 12 19:57 boinc_lockfile
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc      2549 Oct 12 19:57 pandaJob.out
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc    975520 Oct 12 19:57 agis_schedconf.cvmfs.json
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc   1560580 Oct 12 19:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:11:01] drwx------. 5 boinc boinc      4096 Oct 12 19:57 pilot3
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc      9516 Oct 12 20:45 init_data.xml
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc 201400581 Oct 12 21:10 HITS.46676269._072904.pool.root.1
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc        95 Oct 12 21:10 pilot_heartbeat.json
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc       529 Oct 12 21:10 boinc_task_state.xml
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc      1021 Oct 12 21:10 memory_monitor_summary.json
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc    288353 Oct 12 21:10 log.46676269._072904.job.log.tgz.1
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc      7763 Oct 12 21:10 heartbeat.json
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc        27 Oct 12 21:10 wrapper_checkpoint.txt
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc      8192 Oct 12 21:10 boinc_mmap_file
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc       822 Oct 12 21:11 pilotlog.txt
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc    651861 Oct 12 21:11 log.46676269._072904.job.log.1
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc       357 Oct 12 21:11 output.list
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc       620 Oct 12 21:11 runtime_log
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc    962560 Oct 12 21:11 result.tar.gz
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc      8661 Oct 12 21:11 runtime_log.err
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc       642 Oct 12 21:11 HFvNDmsw4R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmAOTMDmt1LlUn.diag
[2025-10-12 21:11:01] -rw-r--r--. 1 boinc boinc     21536 Oct 12 21:11 stderr.txt
[2025-10-12 21:11:01] HITS file was successfully produced:
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc 201400581 Oct 12 21:10 shared/HITS.pool.root.1
[2025-10-12 21:11:01]  *** Contents of shared directory: ***
[2025-10-12 21:11:01] total 413956
[2025-10-12 21:11:01] -rw-r--r--. 2 boinc boinc 220931728 Oct 12 19:57 ATLAS.root_0
[2025-10-12 21:11:01] -rw-r--r--. 2 boinc boinc     15120 Oct 12 19:57 start_atlas.sh
[2025-10-12 21:11:01] -rw-r--r--. 2 boinc boinc    569675 Oct 12 19:57 input.tar.gz
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc 201400581 Oct 12 21:10 HITS.pool.root.1
[2025-10-12 21:11:01] -rw-------. 1 boinc boinc    962560 Oct 12 21:11 result.tar.gz
21:11:03 (3608910): run_atlas exited; CPU time 22759.132329
21:11:03 (3608910): called boinc_finish(0)

</stderr_txt>
]]>

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